CmoCh04G014500 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G014500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Thioredoxin-like 8 family protein
Location	Cmo_Chr04 : 7423046 .. 7424951 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAAAATCAAATGGCGTTTCTTTCAGGTTTTCCGGTTTAGGAGATCCATCGGAACAATCTCTGAACTACTCTGAATCTCCTGGTGGGATCCACCGAAACCCTCTCTAAGCCGCCGCCGCCGCCGCCGTCGCCATCTCCACCCCGATTTAACCCACCAGCCGTTGTCCTCTGAATTTTTCTCTCCTTTTTCCGTTTTCCATCTGAAATGGTGAAAGCTTTGCCTCTTCACCTCGGAAGCGTGAAAATTTTCCCCAAATTCGACAGTTCTTATGATCTTCCTTCGCTTCCCCTGCTCCCGCCCGCGAGGCTCCCCGCCTATGGTTTCAACAAGCTTTCTCTGTCTCGAAAATTTCCGCCGCTTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCTCTGCTCGGAGCTAGGACGCAAGAGAGTTCCCTGCAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGTATGCATACGTTTCTTTTGGGCTTTTCTAGGGTTTTACTGAAACAGAATAACAACCTCTGTTGTACATTAATTCTGATAATTTTCAACAGCTTTCCTTCAAGCCTTTCAAGAACATTTCTCTTTGTTTTACCTTGTTTCGATGATGTGAGTTTATGTGGATATGTAGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGGTTAGCTCTTAGCCCATTTCTTTTGACCAACCAAATGGCTAAGTCCTTATTGAAGTTGTGCTTGTTCTTGATGAATTTTAGATTGCAGTTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGTCGGATTAGCTGTAAGTTCCTTCCAAAGCTTGCAAATTATAGTGATCTTCTTTAGGTAGGATTTTACTTGAGTTCTGTTTACCATGGAAATTAGAACTTGTGTTTCATTACCTTTAGGAACGTTTCCAATTTGCAGTTTGAACATAGGAGTCCGCGGACATGTTGAGCTTGTGTTACTTTGATGGATGAGTTGATTGAATAAACTGCTTGATCTGTTTTATCTTTCATTTATTGTTTGCGAACATGAAATCTTTATGTGAGATCCCACATCGATTGGAGAGGGGAACGAAACATTTCTTATTAGAGCATGAAAACCTCTCCTTAGTAGACGCATTTTAAAACTTTGAGGGGAAGCCCGAGAGGGAAAGTCCAAAGAGGACAATATCTGTTAACGGTAGACTTAGGCTTAGGCTGTTACACTTTCTATACTTGGTTGAATGATACATGTCCTGATCATTTTGATTTCTTGCATTTTCTCGTGTATCTCAACCGTTCGTCTTTGAATCTTCCAGAAGATGCCAGCTATTCAGGTGATTTTCTTCACAATCAGATATGTTAACGTTGGAAACCTTCATCTCTTCTAATATCAAGATCTTGATTATGTTTATTGCAGCTATGGAAGGATGGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAGTGACTTACGATTCATTTTTACCCTCATCCTCTTACCCACTTAGTGGTATTTGAATTGATTGATAGCATCTCATAGAAATTCCCTTCTGCTTACATTCATCAACATAAAGAACACGGCCTGGCTGGCCTTCTGAAGCCTTCTGAAAATATTAGATGGTTGCTTCAGTATGATAGCCGCTCGAAATATTAATTGTTCTCGGTTATAATAATTGTTCAAAATTGATGGTTGTCTTAATAGATGGGCTGATAGTTGTCTCAAAA

mRNA sequence

CAACAAAATCAAATGGCGTTTCTTTCAGGTTTTCCGGTTTAGGAGATCCATCGGAACAATCTCTGAACTACTCTGAATCTCCTGGTGGGATCCACCGAAACCCTCTCTAAGCCGCCGCCGCCGCCGCCGTCGCCATCTCCACCCCGATTTAACCCACCAGCCGTTGTCCTCTGAATTTTTCTCTCCTTTTTCCGTTTTCCATCTGAAATGGTGAAAGCTTTGCCTCTTCACCTCGGAAGCGTGAAAATTTTCCCCAAATTCGACAGTTCTTATGATCTTCCTTCGCTTCCCCTGCTCCCGCCCGCGAGGCTCCCCGCCTATGGTTTCAACAAGCTTTCTCTGTCTCGAAAATTTCCGCCGCTTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCTCTGCTCGGAGCTAGGACGCAAGAGAGTTCCCTGCAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAGTTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGTCGGATTAGCTCTATGGAAGGATGGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAGTGACTTACGATTCATTTTTACCCTCATCCTCTTACCCACTTAGTGGTATTTGAATTGATTGATAGCATCTCATAGAAATTCCCTTCTGCTTACATTCATCAACATAAAGAACACGGCCTGGCTGGCCTTCTGAAGCCTTCTGAAAATATTAGATGGTTGCTTCAGTATGATAGCCGCTCGAAATATTAATTGTTCTCGGTTATAATAATTGTTCAAAATTGATGGTTGTCTTAATAGATGGGCTGATAGTTGTCTCAAAA

Coding sequence (CDS)

ATGGTGAAAGCTTTGCCTCTTCACCTCGGAAGCGTGAAAATTTTCCCCAAATTCGACAGTTCTTATGATCTTCCTTCGCTTCCCCTGCTCCCGCCCGCGAGGCTCCCCGCCTATGGTTTCAACAAGCTTTCTCTGTCTCGAAAATTTCCGCCGCTTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCTCTGCTCGGAGCTAGGACGCAAGAGAGTTCCCTGCAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAGTTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGTCGGATTAGCTCTATGGAAGGATGGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAGTGA

Homology

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BLAST of CmoCh04G014500 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-35
Identity = 77/171 (45.03%), Postives = 115/171 (67.25%), Query Frame = 1


Query: 28  PLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTDEKVSLLGARTQESSLQFRDESPVSMEL 87
           PL+PP R  +  F++   + K+   + K+ +  E++  +  + Q+  LQ  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  QSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYCIDV 147
             I  E  FDQ + DA++    V++VWMA WCR  IYL P+LE+LAA++YPRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRVG------LALWKDGKKQDEVIGLYKAYLVVNDVQKMIERE 193
           N VP++LV R G      + LW+DG+KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 140 NAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

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BLAST of CmoCh04G014500 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-19
Identity = 46/116 (39.66%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 82  PVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQ 141
           P ++E++ I++  E D  ++ A + +  +I+ WMA+WCR  IYL P+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRVGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY +DVN VP  LV R  ++      LWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of CmoCh04G014500 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 46/113 (40.71%), Postives = 76/113 (67.26%), Query Frame = 1


Query: 85  MELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYC 144
           +E++ I S  + D A+  + E+   +I+ WMA+WCR  IYL P+LE++A + +P ++FY 
Sbjct: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGE-FPGVRFYF 139

Query: 145 IDVNMVPHKLVVRVGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           +DVN VP  +V R  +       LWKDG+   EVIG +KA+LV+++V++MI++
Sbjct: 140 VDVNKVPQTVVKRGNITKMPTIQLWKDGEWAAEVIGGHKAWLVMDEVREMIQK 191

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BLAST of CmoCh04G014500 vs. TrEMBL
Match: A0A0A0KUX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.2e-81
Identity = 161/202 (79.70%), Postives = 171/202 (84.65%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60
           MVKALPLH G VK FPKF SS+DLP  P L  ARL   GFN+L LSRKFPPL QKV  T 
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SL GA TQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCIDVNMVPHKLVVRVGLA------LWKDGKKQDEVIG 180
           NYIYL PQLERLAADYYPRLQFYCIDVN+VPHKLVVR GLA      LWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

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BLAST of CmoCh04G014500 vs. TrEMBL
Match: A0A0D2QRD9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G311900 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.8e-38
Identity = 86/185 (46.49%), Postives = 122/185 (65.95%), Query Frame = 1


Query: 11  SVKIFPKFDSSYD-LPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTDEKVSLLGAR 70
           S+K     +SS D LP   +    ++P   F    L RK     +K+        +  A 
Sbjct: 13  SLKTLINSNSSGDCLPCFSVSFSKKIPCSSFG-FCLKRKILGFDEKINGFGGNFGIFSAW 72

Query: 71  TQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQL 130
            +E  L+  D++P+++ELQ I SE +FD+ IA+A++    +I++WMA+WCR  IYL P+L
Sbjct: 73  REEGQLEELDDAPLTVELQQICSESQFDRVIAEAQQLEESLIILWMASWCRKCIYLKPKL 132

Query: 131 ERLAADYYPRLQFYCIDVNMVPHKLVVRVGLALWKDGKKQDEVIGLYKAYLVVNDVQKMI 190
           E+LAAD++PRL+FYC+DVN VPH LV R G+ LW+DGKKQ EVIG +KAYLVVN+V++MI
Sbjct: 133 EKLAADFHPRLRFYCVDVNTVPHNLVARAGVTLWRDGKKQAEVIGGHKAYLVVNEVRQMI 192

Query: 191 ERELT 195
           E E T
Sbjct: 193 ENECT 196

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BLAST of CmoCh04G014500 vs. TrEMBL
Match: A0A0B0PKK5_GOSAR (Thioredoxin-like 3-2, chloroplastic OS=Gossypium arboreum GN=F383_05200 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-37
Identity = 80/158 (50.63%), Postives = 112/158 (70.89%), Query Frame = 1


Query: 37  AYGFNKLSLSRKFPPLSQKVYVTDEKVSLLGARTQESSLQFRDESPVSMELQSISSELEF 96
           ++GF    L RK    ++K+        +  A  +E  L+  D++P+++ELQ I SE +F
Sbjct: 42  SFGF---CLKRKILGFNEKINGFGGNFGIFSAWREEGQLEELDDAPLTVELQQICSESQF 101

Query: 97  DQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYCIDVNMVPHKLVV 156
           D+ IA+A++    +I++WMA+WCR  IYL P+LE+LAADYYPRL+FYC+DVN VPH LV 
Sbjct: 102 DRVIAEAQQLEESLIILWMASWCRKCIYLKPKLEKLAADYYPRLRFYCVDVNTVPHNLVA 161

Query: 157 RVGLALWKDGKKQDEVIGLYKAYLVVNDVQKMIERELT 195
           R G+ LW+D KKQ EVIG +KAYLVVN+V++MIE E T
Sbjct: 162 RAGVTLWRDSKKQAEVIGGHKAYLVVNEVRQMIENECT 196

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BLAST of CmoCh04G014500 vs. TrEMBL
Match: D7TM63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.6e-37
Identity = 90/178 (50.56%), Postives = 116/178 (65.17%), Query Frame = 1


Query: 24  LPSLPLLPPARLPAYGFNKLSLS---RKFPPLSQKVYVTDEKVSLLGARTQESSLQFRDE 83
           LP+ P      L  +    LS+S   RK     QK+ V+  KV  L A  QE  LQ  D+
Sbjct: 15  LPTTPRGSSRILQQFSIPGLSISDFPRKSLNFPQKIGVSGGKVWALAAWNQEGPLQDLDD 74

Query: 84  SPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRL 143
           SPVS+EL+ ISS+ +FD+ + +A++    V +VWMA WCR  IYL P+LE+LAA+YYPRL
Sbjct: 75  SPVSVELKPISSDTQFDRILGEAQQLEESVAIVWMATWCRKCIYLKPKLEKLAAEYYPRL 134

Query: 144 QFYCIDVNMVPHKLVVRVG------LALWKDGKKQDEVIGLYKAYLVVNDVQKMIERE 193
           +FYC+DVN VPHKLV R        + LWKD KKQ EVIG +KAY VVN+V++MIE E
Sbjct: 135 RFYCVDVNTVPHKLVARAAVTKMPTIQLWKDSKKQAEVIGGHKAYFVVNEVREMIENE 192

[Close]

BLAST of CmoCh04G014500 vs. TrEMBL
Match: A0A0D2UWR5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G311900 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.3e-36
Identity = 86/191 (45.03%), Postives = 122/191 (63.87%), Query Frame = 1


Query: 11  SVKIFPKFDSSYD-LPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTDEKVSLLGAR 70
           S+K     +SS D LP   +    ++P   F    L RK     +K+        +  A 
Sbjct: 13  SLKTLINSNSSGDCLPCFSVSFSKKIPCSSFG-FCLKRKILGFDEKINGFGGNFGIFSAW 72

Query: 71  TQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQL 130
            +E  L+  D++P+++ELQ I SE +FD+ IA+A++    +I++WMA+WCR  IYL P+L
Sbjct: 73  REEGQLEELDDAPLTVELQQICSESQFDRVIAEAQQLEESLIILWMASWCRKCIYLKPKL 132

Query: 131 ERLAADYYPRLQFYCIDVNMVPHKLVVRVG------LALWKDGKKQDEVIGLYKAYLVVN 190
           E+LAAD++PRL+FYC+DVN VPH LV R G      + LW+DGKKQ EVIG +KAYLVVN
Sbjct: 133 EKLAADFHPRLRFYCVDVNTVPHNLVARAGVTKMPTIQLWRDGKKQAEVIGGHKAYLVVN 192

Query: 191 DVQKMIERELT 195
           +V++MIE E T
Sbjct: 193 EVRQMIENECT 202

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BLAST of CmoCh04G014500 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-36
Identity = 77/171 (45.03%), Postives = 115/171 (67.25%), Query Frame = 1


Query: 28  PLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTDEKVSLLGARTQESSLQFRDESPVSMEL 87
           PL+PP R  +  F++   + K+   + K+ +  E++  +  + Q+  LQ  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  QSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYCIDV 147
             I  E  FDQ + DA++    V++VWMA WCR  IYL P+LE+LAA++YPRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRVG------LALWKDGKKQDEVIGLYKAYLVVNDVQKMIERE 193
           N VP++LV R G      + LW+DG+KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 140 NAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of CmoCh04G014500 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-14
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 82  PVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQ 141
           P ++E++ I++  E D  ++ A + +  +I+ WMA+WCR  IYL P+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRVGLAL 163
           FY +DVN VP  LV R  +++
Sbjct: 153 FYYVDVNKVPQTLVKRGNISV 173

[Close]

BLAST of CmoCh04G014500 vs. NCBI nr
Match: gi|659092012|ref|XP_008446853.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 7.2e-85
Identity = 165/201 (82.09%), Postives = 175/201 (87.06%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFDSS+DLP  P L  ARLP  GFN+L LSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGA TQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCIDVNMVPHKLVVRVGLA-----LWKDGKKQDEVIGL 180
           NYIYL PQLERLAADYYPRLQFYCIDVNMVPHKLVVR GLA     LWKDGKKQDEV+GL
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAMPAIQLWKDGKKQDEVVGL 180

Query: 181 YKAYLVVNDVQKMIERELTGE 197
           YKAYLVVNDV+KMIERELT E
Sbjct: 181 YKAYLVVNDVRKMIERELTDE 201

[Close]

BLAST of CmoCh04G014500 vs. NCBI nr
Match: gi|659092010|ref|XP_008446852.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo])

HSP 1 Score: 321.6 bits (823), Expect = 9.4e-85
Identity = 165/202 (81.68%), Postives = 175/202 (86.63%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFDSS+DLP  P L  ARLP  GFN+L LSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGA TQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCIDVNMVPHKLVVRVGLA------LWKDGKKQDEVIG 180
           NYIYL PQLERLAADYYPRLQFYCIDVNMVPHKLVVR GLA      LWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CmoCh04G014500 vs. NCBI nr
Match: gi|659092008|ref|XP_008446851.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.7e-84
Identity = 165/206 (80.10%), Postives = 175/206 (84.95%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFDSS+DLP  P L  ARLP  GFN+L LSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGA TQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCIDVNMVPHKLVVRVGLA----------LWKDGKKQD 180
           NYIYL PQLERLAADYYPRLQFYCIDVNMVPHKLVVR GLA          LWKDGKKQD
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVGLEKMPAIQLWKDGKKQD 180

Query: 181 EVIGLYKAYLVVNDVQKMIERELTGE 197
           EV+GLYKAYLVVNDV+KMIERELT E
Sbjct: 181 EVVGLYKAYLVVNDVRKMIERELTDE 206

[Close]

BLAST of CmoCh04G014500 vs. NCBI nr
Match: gi|659092006|ref|XP_008446850.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X6 [Cucumis melo])

HSP 1 Score: 315.1 bits (806), Expect = 8.8e-83
Identity = 165/208 (79.33%), Postives = 175/208 (84.13%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFDSS+DLP  P L  ARLP  GFN+L LSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGA TQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYP-------RLQFYCIDVNMVPHKLVVRVGLA-----LWKDGKK 180
           NYIYL PQLERLAADYYP       RLQFYCIDVNMVPHKLVVR GLA     LWKDGKK
Sbjct: 121 NYIYLKPQLERLAADYYPSMCLMNCRLQFYCIDVNMVPHKLVVRAGLAMPAIQLWKDGKK 180

Query: 181 QDEVIGLYKAYLVVNDVQKMIERELTGE 197
           QDEV+GLYKAYLVVNDV+KMIERELT E
Sbjct: 181 QDEVVGLYKAYLVVNDVRKMIERELTDE 208

[Close]

BLAST of CmoCh04G014500 vs. NCBI nr
Match: gi|659092004|ref|XP_008446849.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X5 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.1e-82
Identity = 165/209 (78.95%), Postives = 175/209 (83.73%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFDSS+DLP  P L  ARLP  GFN+L LSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGA TQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYP-------RLQFYCIDVNMVPHKLVVRVGLA------LWKDGK 180
           NYIYL PQLERLAADYYP       RLQFYCIDVNMVPHKLVVR GLA      LWKDGK
Sbjct: 121 NYIYLKPQLERLAADYYPSMCLMNCRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGK 180

Query: 181 KQDEVIGLYKAYLVVNDVQKMIERELTGE 197
           KQDEV+GLYKAYLVVNDV+KMIERELT E
Sbjct: 181 KQDEVVGLYKAYLVVNDVRKMIERELTDE 209

The following BLAST results are available for this feature:

BLAST of CmoCh04G014500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL32_ARATH	2.3e-35	45.03	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1	[more]
TRL31_ARATH	1.4e-19	39.66	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3	[more]
TRL31_ORYSJ	2.2e-17	40.71	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774...	[more]

BLAST of CmoCh04G014500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUX7_CUCSA	1.2e-81	79.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1	[more]
A0A0D2QRD9_GOSRA	7.8e-38	46.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G311900 PE=4 SV=1	[more]
A0A0B0PKK5_GOSAR	1.3e-37	50.63	Thioredoxin-like 3-2, chloroplastic OS=Gossypium arboreum GN=F383_05200 PE=4 SV=...	[more]
D7TM63_VITVI	6.6e-37	50.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=...	[more]
A0A0D2UWR5_GOSRA	7.3e-36	45.03	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G311900 PE=4 SV=1	[more]

BLAST of CmoCh04G014500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04260.1	1.3e-36	45.03	WCRKC thioredoxin 2	[more]
AT5G06690.2	4.1e-14	41.98	WCRKC thioredoxin 1	[more]

BLAST of CmoCh04G014500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092012\|ref\|XP_008446853.1\|	7.2e-85	82.09	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo]	[more]
gi\|659092010\|ref\|XP_008446852.1\|	9.4e-85	81.68	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo]	[more]
gi\|659092008\|ref\|XP_008446851.1\|	2.7e-84	80.10	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo]	[more]
gi\|659092006\|ref\|XP_008446850.1\|	8.8e-83	79.33	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X6 [Cucumis melo]	[more]
gi\|659092004\|ref\|XP_008446849.1\|	1.1e-82	78.95	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X5 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014500.1	CmoCh04G014500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 24..192 score: 1.8
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 79..191 score: 5.
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 80..190 score: 3.12
None	No IPR available	PANTHER	PTHR10438:SF297	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 24..192 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G014500	CmaCh04G013780	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G014500	CmaCh18G009040	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G014500	Cla020547	Watermelon (97103) v1	cmowmB693
CmoCh04G014500	ClCG05G021170	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G014500	Lsi04G000830	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G014500	Cp4.1LG01g14670	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G014500	Cla97C05G102830	Watermelon (97103) v2	cmowmbB729
CmoCh04G014500	Carg20706	Silver-seed gourd	carcmoB0655
CmoCh04G014500	Carg01948	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G014500	CmoCh18G009080	Cucurbita moschata (Rifu)	cmocmoB336

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G014500	Watermelon (97103) v2	cmowmbB761
CmoCh04G014500	Wax gourd	cmowgoB0869
CmoCh04G014500	Wax gourd	cmowgoB0904
CmoCh04G014500	Cucurbita moschata (Rifu)	cmocmoB257
CmoCh04G014500	Cucurbita moschata (Rifu)	cmocmoB468
CmoCh04G014500	Cucumber (Gy14) v1	cgycmoB0382
CmoCh04G014500	Cucumber (Gy14) v1	cgycmoB0848
CmoCh04G014500	Cucurbita maxima (Rimu)	cmacmoB305
CmoCh04G014500	Cucurbita maxima (Rimu)	cmacmoB739
CmoCh04G014500	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G014500	Wild cucumber (PI 183967)	cmocpiB767
CmoCh04G014500	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G014500	Cucumber (Chinese Long) v2	cmocuB758
CmoCh04G014500	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G014500	Melon (DHL92) v3.5.1	cmomeB674
CmoCh04G014500	Watermelon (Charleston Gray)	cmowcgB681
CmoCh04G014500	Watermelon (97103) v1	cmowmB662
CmoCh04G014500	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G014500	Cucurbita pepo (Zucchini)	cmocpeB665
CmoCh04G014500	Cucurbita pepo (Zucchini)	cmocpeB687
CmoCh04G014500	Bottle gourd (USVL1VR-Ls)	cmolsiB700
CmoCh04G014500	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G014500	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G014500	Melon (DHL92) v3.6.1	cmomedB763
CmoCh04G014500	Silver-seed gourd	carcmoB0366
CmoCh04G014500	Silver-seed gourd	carcmoB0939
CmoCh04G014500	Cucumber (Chinese Long) v3	cmocucB0874