CSPI05G26960 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G26960
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Thioredoxin
Location	Chr5 : 25666815 .. 25668336 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAATTCAAGGATTGCATGCGGCAGTCAGCAACGACTTCCGGGATGCTTCCCTTTGTATTTCTTTTTGTTTAATTTCATTATTCTATTTTGTTTCTTAATTCTCTCTTTTTTATTTATTATTTTGTTTTACGAAACCAAATGGCGTTTCGTTAAGGTTTCACAGTTTGTGAAATCCATCGGAAACAATATCTGAATTCACTCTGATTCTCCCGGTGGGACTTCACCGGAACCATCTCTGACGCCGCCGCTGCCGCTGTTCCCATCTAGTCCACCACTCTCTCTCTCTCCCCTACTTTGAATTTTTCTTTTTGTTTCCCAATTCTTCTCCCCTTCCGAAATGGTCAAAGCTCTGCCCCTTCACCACGGAATTGTGAAATCTTTTCCCAAATTCGGCAGTTCTTTTGATCTTCCTCCGTCTCCTCAACTTCTGTCCGCGAGGCTCGCCGGCTCTGGTTTCAATAGGCTTCCTTTGTCTCGGAAATTTCCGCCGCTTTTTCAGAAAGTTCCTGCGACTGGTGAGAAGACTTCGCTTTTTGGAGCTTGGACCCAAGATAGTGCCTTGCAATTTCGAGATGAATCGCCTGTTTCGATTGAGCTTAAGTCAATTTCGAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGGAGGAACGCAACGAGCTCGTGATTCTTGTTTGGTATGTTTAAGTTTCTTGTGGGATTTTTCTGGGAAATGTTGAGTTAATTACGGAACTTTCTAACAAAGCGTTTTTCGGCTTAAGTTTTAGAGAGACGATGTGAAAGTATTTGAGTTTGACTGAATCTTGTTTGATTAGAAGTTTATTTGTTTATTAGGAAAGATTGTTCTCAACTGCTATATTGATTAACCTTCGTTGTACATTGATTTTGATCATTTGGAAGTGAATGGCGTGATTGATATTCTTCTTCAATTTTCCTTACAAGCCTTTCAAATGCATTTCTCATGATTTTATCATCTTTAGTTGAAAAGTGAATTTATGTGGATCTGTAGGATGGCTAACTGGTGCAGAAATTATATCTATTTAAAGCCTCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGGTTAGCTCCTAACCCATTTCTTCTAATCAACCAAATGGCTAAAATTGTACTATATTTTCATTCTCCATGTGCTGGATACTTCTTAAAAGATCAGTTTTTCAGTCCTTATTGAAGTTTTGTATGTGCTTGATGAATTGTAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGAGCCGGACTAGCTGTAAGTTCCTTTCAAAGCCTTTTGATGTTTGTTCCATTTTTTTTGTGTTGCCTTAAACCTTTATATTGATCTTCTTTAGGTAGGACTTGAGGTTATGATAACTTCTACTTCTCTGAGAGAGTGATTTTCTTTGGATACTGTACTAGAGCTTCTGTCTACAATGGAAATTAGGGCTTGTGTTTCATTGCCTTCAGGAACATTCCCAACTTGCAGTTTGAACATAGGAG

mRNA sequence

ATGGTCAAAGCTCTGCCCCTTCACCACGGAATTGTGAAATCTTTTCCCAAATTCGGCAGTTCTTTTGATCTTCCTCCGTCTCCTCAACTTCTGTCCGCGAGGCTCGCCGGCTCTGGTTTCAATAGGCTTCCTTTGTCTCGGAAATTTCCGCCGCTTTTTCAGAAAGTTCCTGCGACTGGTGAGAAGACTTCGCTTTTTGGAGCTTGGACCCAAGATAGTGCCTTGCAATTTCGAGATGAATCGCCTGTTTCGATTGAGCTTAAGTCAATTTCGAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGGAGGAACGCAACGAGCTCGTGATTCTTGTTTGGATGGCTAACTGGTGCAGAAATTATATCTATTTAAAGCCTCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGAGCCGGACTAGCTGTAAGTTCCTTTCAAAGCCTTTTGATGTTTGTTCCATTTTTTTTGTGTTGCCTTAAACCTTTATATTGA

Coding sequence (CDS)

ATGGTCAAAGCTCTGCCCCTTCACCACGGAATTGTGAAATCTTTTCCCAAATTCGGCAGTTCTTTTGATCTTCCTCCGTCTCCTCAACTTCTGTCCGCGAGGCTCGCCGGCTCTGGTTTCAATAGGCTTCCTTTGTCTCGGAAATTTCCGCCGCTTTTTCAGAAAGTTCCTGCGACTGGTGAGAAGACTTCGCTTTTTGGAGCTTGGACCCAAGATAGTGCCTTGCAATTTCGAGATGAATCGCCTGTTTCGATTGAGCTTAAGTCAATTTCGAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGGAGGAACGCAACGAGCTCGTGATTCTTGTTTGGATGGCTAACTGGTGCAGAAATTATATCTATTTAAAGCCTCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGAGCCGGACTAGCTGTAAGTTCCTTTCAAAGCCTTTTGATGTTTGTTCCATTTTTTTTGTGTTGCCTTAAACCTTTATATTGA

Homology

[Close]

BLAST of CSPI05G26960 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.3e-27
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 27  SPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATGEKTSLFGAWTQDSALQFRDESPVSIE 86
           SP +   R   S F+R P + K+     K+    E+        QD  LQ  D+SPVS+E
Sbjct: 19  SPLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVE 78

Query: 87  LKSISSELEFDKAIADAEERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCID 146
           L  I  E  FD+ + DA++  E V++VWMA WCR  IYLKP+LE+LAA++YPRL+FY +D
Sbjct: 79  LGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVD 138

Query: 147 VNMVPHKLVVRAGL 161
           VN VP++LV RAG+
Sbjct: 139 VNAVPYRLVSRAGV 151

[Close]

BLAST of CSPI05G26960 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 82  PVSIELKSISSELEFDKAIADAEERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I++  E D  ++ A + ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLA 162
           FY +DVN VP  LV R  ++
Sbjct: 153 FYYVDVNKVPQTLVKRGNIS 172

[Close]

BLAST of CSPI05G26960 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-11
Identity = 31/76 (40.79%), Postives = 51/76 (67.11%), Query Frame = 1


Query: 85  IELKSISSELEFDKAIADAEERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYC 144
           +E++ I S  + D A+  + E  + +I+ WMA+WCR  IYLKP+LE++A + +P ++FY 
Sbjct: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGE-FPGVRFYF 139

Query: 145 IDVNMVPHKLVVRAGL 161
           +DVN VP  +V R  +
Sbjct: 140 VDVNKVPQTVVKRGNI 154

[Close]

BLAST of CSPI05G26960 vs. TrEMBL
Match: A0A0A0KUX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 9.4e-86
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 1


Query: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATG 60
           MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKV ATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120
           EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA 162
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLA
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLA 161

[Close]

BLAST of CSPI05G26960 vs. TrEMBL
Match: D7TM63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.6e-30
Identity = 70/140 (50.00%), Postives = 92/140 (65.71%), Query Frame = 1


Query: 24  LPPSPQLLSARLAGSGFNRLPLS---RKFPPLFQKVPATGEKTSLFGAWTQDSALQFRDE 83
           LP +P+  S  L       L +S   RK     QK+  +G K     AW Q+  LQ  D+
Sbjct: 15  LPTTPRGSSRILQQFSIPGLSISDFPRKSLNFPQKIGVSGGKVWALAAWNQEGPLQDLDD 74

Query: 84  SPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCRNYIYLKPQLERLAADYYPRL 143
           SPVS+ELK ISS+ +FD+ + +A++  E V +VWMA WCR  IYLKP+LE+LAA+YYPRL
Sbjct: 75  SPVSVELKPISSDTQFDRILGEAQQLEESVAIVWMATWCRKCIYLKPKLEKLAAEYYPRL 134

Query: 144 QFYCIDVNMVPHKLVVRAGL 161
           +FYC+DVN VPHKLV RA +
Sbjct: 135 RFYCVDVNTVPHKLVARAAV 154

[Close]

BLAST of CSPI05G26960 vs. TrEMBL
Match: W9SA32_9ROSA (Thioredoxin-like 3-2 OS=Morus notabilis GN=L484_013033 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-29
Identity = 63/101 (62.38%), Postives = 80/101 (79.21%), Query Frame = 1


Query: 68  AWTQD--SALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCRNYIYL 127
           AW Q   S+LQ  DESP S+EL  +SSE +FD+ IADA + +E +I +WMA+WCR  IYL
Sbjct: 72  AWNQQEGSSLQELDESPASVELTPVSSETQFDRLIADAHQLDESLIFLWMASWCRKCIYL 131

Query: 128 KPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVSSFQ 167
           KP+LE+LAADYYPRL+FYC+DVNMVPHKLV RAG+  S+ +
Sbjct: 132 KPKLEKLAADYYPRLRFYCVDVNMVPHKLVARAGVTESALE 172

[Close]

BLAST of CSPI05G26960 vs. TrEMBL
Match: A0A0B0PKK5_GOSAR (Thioredoxin-like 3-2, chloroplastic OS=Gossypium arboreum GN=F383_05200 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-29
Identity = 59/118 (50.00%), Postives = 86/118 (72.88%), Query Frame = 1


Query: 45  LSRKFPPLFQKVPATGEKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAE 104
           L RK     +K+   G    +F AW ++  L+  D++P+++EL+ I SE +FD+ IA+A+
Sbjct: 47  LKRKILGFNEKINGFGGNFGIFSAWREEGQLEELDDAPLTVELQQICSESQFDRVIAEAQ 106

Query: 105 ERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAV 163
           +  E +I++WMA+WCR  IYLKP+LE+LAADYYPRL+FYC+DVN VPH LV RAG+ +
Sbjct: 107 QLEESLIILWMASWCRKCIYLKPKLEKLAADYYPRLRFYCVDVNTVPHNLVARAGVTL 164

[Close]

BLAST of CSPI05G26960 vs. TrEMBL
Match: A0A061FN59_THECC (WCRKC thioredoxin 2 OS=Theobroma cacao GN=TCM_043218 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.1e-29
Identity = 61/123 (49.59%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 38  SGFNRLPLSRKFPPLFQKVPATGEKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFD 97
           S F+ L L RK     +++   G K  +F AW +D  L+  D++P+++EL+ I SE +FD
Sbjct: 40  SSFDGLSLKRKTLSFSERINRFGGKFGIFNAWKKDGYLEELDDAPLAVELQQICSESQFD 99

Query: 98  KAIADAEERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVR 157
           + IA+A++  E +I++WMA+WCR  IYLKP+LE+LAA+YYPRL+FY +DVN VPH LV R
Sbjct: 100 RVIAEAQQLEESLIILWMASWCRKCIYLKPKLEKLAAEYYPRLRFYRVDVNTVPHNLVAR 159

Query: 158 AGL 161
           AG+
Sbjct: 160 AGV 162

[Close]

BLAST of CSPI05G26960 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-28
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 27  SPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATGEKTSLFGAWTQDSALQFRDESPVSIE 86
           SP +   R   S F+R P + K+     K+    E+        QD  LQ  D+SPVS+E
Sbjct: 19  SPLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVE 78

Query: 87  LKSISSELEFDKAIADAEERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCID 146
           L  I  E  FD+ + DA++  E V++VWMA WCR  IYLKP+LE+LAA++YPRL+FY +D
Sbjct: 79  LGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVD 138

Query: 147 VNMVPHKLVVRAGL 161
           VN VP++LV RAG+
Sbjct: 139 VNAVPYRLVSRAGV 151

[Close]

BLAST of CSPI05G26960 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-17
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 82  PVSIELKSISSELEFDKAIADAEERNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I++  E D  ++ A + ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLAVSSFQSLLMFVPFFLC 178
           FY +DVN VP  LV R  ++V     +L F    +C
Sbjct: 153 FYYVDVNKVPQTLVKRGNISVKCLNIILSFFSDVVC 188

[Close]

BLAST of CSPI05G26960 vs. NCBI nr
Match: gi|778706571|ref|XP_011655874.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 327.0 bits (837), Expect = 2.1e-86
Identity = 160/166 (96.39%), Postives = 163/166 (98.19%), Query Frame = 1


Query: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATG 60
           MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKV ATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120
           EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVSSFQ 167
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLA+ + Q
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAMPAIQ 166

[Close]

BLAST of CSPI05G26960 vs. NCBI nr
Match: gi|778706563|ref|XP_011655873.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 4.7e-86
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 1


Query: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATG 60
           MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKV ATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120
           EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAV 163
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLAV
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAV 162

[Close]

BLAST of CSPI05G26960 vs. NCBI nr
Match: gi|778706568|ref|XP_004142496.2| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 1.4e-85
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 1


Query: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATG 60
           MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKV ATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120
           EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA 162
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLA
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLA 161

[Close]

BLAST of CSPI05G26960 vs. NCBI nr
Match: gi|659092012|ref|XP_008446853.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 2.8e-83
Identity = 156/166 (93.98%), Postives = 159/166 (95.78%), Query Frame = 1


Query: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATG 60
           MVKALPLH GIVKSFPKF SSFDLPPSPQLLSARL GSGFNRLPLSRKFPP+FQKV ATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120
           EKTSL GAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVSSFQ 167
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA+ + Q
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAMPAIQ 166

[Close]

BLAST of CSPI05G26960 vs. NCBI nr
Match: gi|659092008|ref|XP_008446851.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo])

HSP 1 Score: 315.5 bits (807), Expect = 6.3e-83
Identity = 156/162 (96.30%), Postives = 157/162 (96.91%), Query Frame = 1


Query: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVPATG 60
           MVKALPLH GIVKSFPKF SSFDLPPSPQLLSARL GSGFNRLPLSRKFPP+FQKV ATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120
           EKTSL GAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAV 163
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAV
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAV 162

The following BLAST results are available for this feature:

BLAST of CSPI05G26960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL32_ARATH	8.3e-27	46.27	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1	[more]
TRL31_ARATH	1.3e-14	43.75	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3	[more]
TRL31_ORYSJ	4.9e-11	40.79	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774...	[more]

BLAST of CSPI05G26960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUX7_CUCSA	9.4e-86	98.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1	[more]
D7TM63_VITVI	9.6e-30	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=...	[more]
W9SA32_9ROSA	4.8e-29	62.38	Thioredoxin-like 3-2 OS=Morus notabilis GN=L484_013033 PE=4 SV=1	[more]
A0A0B0PKK5_GOSAR	4.8e-29	50.00	Thioredoxin-like 3-2, chloroplastic OS=Gossypium arboreum GN=F383_05200 PE=4 SV=...	[more]
A0A061FN59_THECC	8.1e-29	49.59	WCRKC thioredoxin 2 OS=Theobroma cacao GN=TCM_043218 PE=4 SV=1	[more]

BLAST of CSPI05G26960 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04260.1	4.7e-28	46.27	WCRKC thioredoxin 2	[more]
AT5G06690.2	2.2e-17	40.63	WCRKC thioredoxin 1	[more]

BLAST of CSPI05G26960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706571\|ref\|XP_011655874.1\|	2.1e-86	96.39	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X3 [Cucumis sativus]	[more]
gi\|778706563\|ref\|XP_011655873.1\|	4.7e-86	98.77	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|778706568\|ref\|XP_004142496.2\|	1.4e-85	98.76	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659092012\|ref\|XP_008446853.1\|	2.8e-83	93.98	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo]	[more]
gi\|659092008\|ref\|XP_008446851.1\|	6.3e-83	96.30	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G26960.1	CSPI05G26960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 24..159 score: 1.1
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 83..151 score: 6.
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 87..149 score: 2.
None	No IPR available	PANTHER	PTHR10438:SF297	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 24..159 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G26960	Cla020547	Watermelon (97103) v1	cpiwmB410
CSPI05G26960	Csa5G622670	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G26960	MELO3C012410	Melon (DHL92) v3.5.1	cpimeB369
CSPI05G26960	ClCG05G021170	Watermelon (Charleston Gray)	cpiwcgB412
CSPI05G26960	Lsi04G000830	Bottle gourd (USVL1VR-Ls)	cpilsiB372
CSPI05G26960	MELO3C012410.2	Melon (DHL92) v3.6.1	cpimedB363
CSPI05G26960	CsaV3_5G036090	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G26960	Cla97C05G102830	Watermelon (97103) v2	cpiwmbB402
CSPI05G26960	Bhi07G000720	Wax gourd	cpiwgoB506
CSPI05G26960	Cucsa.308540	Cucumber (Gy14) v1	cgycpiB464
CSPI05G26960	CmaCh18G009040	Cucurbita maxima (Rimu)	cmacpiB423
CSPI05G26960	CmoCh18G009080	Cucurbita moschata (Rifu)	cmocpiB411
CSPI05G26960	Cp4.1LG09g04000	Cucurbita pepo (Zucchini)	cpecpiB036
CSPI05G26960	CsGy5G026410	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G26960	Carg20706	Silver-seed gourd	carcpiB0522

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G26960	Silver-seed gourd	carcpiB0299
CSPI05G26960	Silver-seed gourd	carcpiB0723
CSPI05G26960	Silver-seed gourd	carcpiB0877
CSPI05G26960	Watermelon (97103) v2	cpiwmbB425
CSPI05G26960	Wax gourd	cpiwgoB492
CSPI05G26960	Wild cucumber (PI 183967)	cpicpiB122
CSPI05G26960	Wild cucumber (PI 183967)	cpicpiB185
CSPI05G26960	Cucumber (Gy14) v1	cgycpiB199
CSPI05G26960	Cucumber (Gy14) v1	cgycpiB569
CSPI05G26960	Cucurbita maxima (Rimu)	cmacpiB309
CSPI05G26960	Cucurbita maxima (Rimu)	cmacpiB743
CSPI05G26960	Cucurbita maxima (Rimu)	cmacpiB755
CSPI05G26960	Cucurbita moschata (Rifu)	cmocpiB302
CSPI05G26960	Cucurbita moschata (Rifu)	cmocpiB736
CSPI05G26960	Cucurbita moschata (Rifu)	cmocpiB745
CSPI05G26960	Cucumber (Chinese Long) v2	cpicuB259
CSPI05G26960	Melon (DHL92) v3.5.1	cpimeB390
CSPI05G26960	Melon (DHL92) v3.5.1	cpimeB396
CSPI05G26960	Watermelon (Charleston Gray)	cpiwcgB366
CSPI05G26960	Watermelon (Charleston Gray)	cpiwcgB432
CSPI05G26960	Watermelon (97103) v1	cpiwmB380
CSPI05G26960	Watermelon (97103) v1	cpiwmB387
CSPI05G26960	Watermelon (97103) v1	cpiwmB443
CSPI05G26960	Cucurbita pepo (Zucchini)	cpecpiB184
CSPI05G26960	Cucurbita pepo (Zucchini)	cpecpiB425
CSPI05G26960	Cucurbita pepo (Zucchini)	cpecpiB439
CSPI05G26960	Bottle gourd (USVL1VR-Ls)	cpilsiB393
CSPI05G26960	Melon (DHL92) v3.6.1	cpimedB384
CSPI05G26960	Cucumber (Gy14) v2	cgybcpiB286