CmaCh18G005380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G005380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem I reaction center subunit III
LocationCma_Chr18 : 3423393 .. 3424067 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCACAATCCCCACAAACCTCTCTAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGCTCCGCCACCCAAAATCAAAATGAAACCGCTTCCTCCTCCCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCTGCTGTCGCAGACATCGCCGGTCTCACCCCCTGCAAGGATTCCAAGCAATTTGCCAAGCGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGGTTCGCTTTCTATGGAAAGCAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGGTGAGTTTATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGAAGCTATTTGATTGCTATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTTCCTTTGGCTACTAGCTTGGTGTTCAGAGGCTTTAGCTGGCCTATTGCTGCTTACAGAGAGCTTGTCAATGGCGAACTCATTGCCAAGGATGTCTAA

mRNA sequence

ATGTCTCTCACAATCCCCACAAACCTCTCTAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGCTCCGCCACCCAAAATCAAAATGAAACCGCTTCCTCCTCCCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCTGCTGTCGCAGACATCGCCGGTCTCACCCCCTGCAAGGATTCCAAGCAATTTGCCAAGCGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGGTTCGCTTTCTATGGAAAGCAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGGTGAGTTTATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGAAGCTATTTGATTGCTATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTTCCTTTGGCTACTAGCTTGGTGTTCAGAGGCTTTAGCTGGCCTATTGCTGCTTACAGAGAGCTTGTCAATGGCGAACTCATTGCCAAGGATGTCTAA

Coding sequence (CDS)

ATGTCTCTCACAATCCCCACAAACCTCTCTAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGCTCCGCCACCCAAAATCAAAATGAAACCGCTTCCTCCTCCCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCTGCTGTCGCAGACATCGCCGGTCTCACCCCCTGCAAGGATTCCAAGCAATTTGCCAAGCGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGGTTCGCTTTCTATGGAAAGCAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGGTGAGTTTATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGAAGCTATTTGATTGCTATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTTCCTTTGGCTACTAGCTTGGTGTTCAGAGGCTTTAGCTGGCCTATTGCTGCTTACAGAGAGCTTGTCAATGGCGAACTCATTGCCAAGGATGTCTAA

Protein sequence

MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV
Homology
[Close]
BLAST of CmaCh18G005380 vs. Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.7e-85
Identity = 161/224 (71.88%), Postives = 185/224 (82.59%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSI 60
           MSLTIP NL   +L P+ + SL      SS+    +    + +   S++AFSAA+ALSSI
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQSMKAFSAAVALSSI 60

Query: 61  LLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTK 120
           LLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAP+SAPALA+ A +EKTK
Sbjct: 61  LLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTK 120

Query: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRF  YGK GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIAI  
Sbjct: 121 RRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISG 180

Query: 181 DKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           +KKP  KEIIIDVPLA+ ++FRGF WP+AAYRE +NG+LIAKDV
Sbjct: 181 EKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

[Close]
BLAST of CmaCh18G005380 vs. Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.1e-84
Identity = 168/228 (73.68%), Postives = 194/228 (85.09%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPL-LKPKFSSSLASKSR-PSSSILCSATQNQ---NETASSSLQAFSAAL 60
           MS TI T+  +PL +    SS + SKS+  S+SI+CS + ++   N    SSL+A SAAL
Sbjct: 1   MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAAL 60

Query: 61  ALSSILLSAPLPAV---ADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAI 120
           ALSSIL+S+ +PA+   ADI+GLTPCK+SKQFAKREKQ +KKLESSLK YAPDSAPALAI
Sbjct: 61  ALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120

Query: 121 QASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGR 180
           +A++EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGR
Sbjct: 121 KATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGR 180

Query: 181 SYLIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELI 221
           SYLIAIRD+KKPTQKEIIIDVPLAT L+FRGFSWP+AAYRE +NGELI
Sbjct: 181 SYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228

[Close]
BLAST of CmaCh18G005380 vs. Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.4e-81
Identity = 165/229 (72.05%), Postives = 186/229 (81.22%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLL-KPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAF----SAAL 60
           MS TIPTNL KPL  KPK  SS  S   P S I+C    +Q +     L       +AAL
Sbjct: 1   MSFTIPTNLYKPLATKPKHLSS--SSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAAL 60

Query: 61  ALSSILLS----APLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALA 120
           ALSS+LLS    AP  A+ADIAGLTPCK+SKQFAKREKQ +KKL++SLK YA DSAPALA
Sbjct: 61  ALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALA 120

Query: 121 IQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVG 180
           I+A++EKTK+RF  YGK GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVG
Sbjct: 121 IKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVG 180

Query: 181 RSYLIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELI 221
           RSYLIAIRD+KKPTQKEIIIDVPLA+SL+FRGFSWP+AAYREL+NGEL+
Sbjct: 181 RSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227

[Close]
BLAST of CmaCh18G005380 vs. Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-75
Identity = 152/220 (69.09%), Postives = 176/220 (80.00%), Query Frame = 1 

Query: 19  SSSLASK---SRPSS--SILCSATQ--NQNETASSSLQA----FSAALALSSILLSA--- 78
           S++ A+K   SRP +  S+ CSA+   N N TA+ SL A    FSAALALSS+LLS+   
Sbjct: 11  STAFAAKPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAAT 70

Query: 79  -PLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRF 138
            P PA ADIAGLTPCK+SK FAKREKQ +KKL SSLK YAPDSAPALAIQA+++KTKRRF
Sbjct: 71  SPPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 130

Query: 139 AFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKK 198
             YGK GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLIA+  +KK
Sbjct: 131 ENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKK 190

Query: 199 PTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKD 224
           P  +EIIIDV LA  ++ RGF WP+AAYREL+NG+L+  D
Sbjct: 191 PAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230

[Close]
BLAST of CmaCh18G005380 vs. Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.4e-52
Identity = 112/211 (53.08%), Postives = 147/211 (69.67%), Query Frame = 1 

Query: 17  KFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSILLSAPLPAVADIAGLT 76
           K SS +A  SR +  + C A   +NETAS    A +A+   +++ LSAP  A+ADIAGLT
Sbjct: 11  KASSRVAPSSRRALRVACQA--QKNETASKVGTALAASALAAAVSLSAPSAAMADIAGLT 70

Query: 77  PCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGAD 136
           PC +SK +AK EK+++K LE  LK Y  DSAPA+A++A++E+TK RFA Y K GLLCG D
Sbjct: 71  PCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGND 130

Query: 137 GLPHLI----VSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIID 196
           GLPHLI    ++    H GE   P F FLY+AG+IG+VGR YLIA++ + KPT KEIIID
Sbjct: 131 GLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIID 190

Query: 197 VPLATSLVFRGFSWPIAAYRELVNGELIAKD 224
           VPLAT L ++G  WP+AA +EL  G L+ K+
Sbjct: 191 VPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219

[Close]
BLAST of CmaCh18G005380 vs. TrEMBL
Match: A0A0A0M3X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714680 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 7.1e-112
Identity = 209/224 (93.30%), Postives = 219/224 (97.77%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPKFSS LA K +PSSSILCSA+QNQN+  SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQNQNTSSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTK 120
           LLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLESSLKNYAPDSAPALAI+A++EKTK
Sbjct: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEKTK 120

Query: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           +KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 EKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

[Close]
BLAST of CmaCh18G005380 vs. TrEMBL
Match: M5WHJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010953mg PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 4.1e-99
Identity = 195/230 (84.78%), Postives = 208/230 (90.43%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNET-----ASSSLQAFSAAL 60
           MSLTIPTNLSKP+LKPKFSS LA+K  P + + CSA+Q  N T      +S +QAFSAAL
Sbjct: 1   MSLTIPTNLSKPMLKPKFSSPLATKL-PRTVVFCSASQTPNPTPEKISTASPMQAFSAAL 60

Query: 61  ALSSILL-SAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQA 120
           ALSSILL SAP+PAVADIAGLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI A
Sbjct: 61  ALSSILLGSAPMPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAINA 120

Query: 121 SVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           ++EKT+RRFA YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTQRRFANYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           LIAIRDDKKPTQKEIIIDVPLATSLVFRGF WP+AAYRELVNGELIAKDV
Sbjct: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFIWPVAAYRELVNGELIAKDV 229

[Close]
BLAST of CmaCh18G005380 vs. TrEMBL
Match: A0A067KCM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07458 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.4e-96
Identity = 185/228 (81.14%), Postives = 202/228 (88.60%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQN----QNETASSSLQAFSAALA 60
           MSLTIPTNLSKP+LKPK  SSL       S I+CSA+QN    + +++ S LQAFSAALA
Sbjct: 1   MSLTIPTNLSKPMLKPKLGSSLNPAKSSRSLIVCSASQNSSTQEKDSSKSPLQAFSAALA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLESSLK YAPDSAPALAIQA++
Sbjct: 61  LSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPALAIQATI 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLI 180
           EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 181 AIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           AI D+KKP  KEIIIDVPLAT L+FRGFSWP+AAYREL+NGEL+ KDV
Sbjct: 181 AISDEKKPAMKEIIIDVPLATRLIFRGFSWPVAAYRELLNGELVVKDV 228

[Close]
BLAST of CmaCh18G005380 vs. TrEMBL
Match: B9RRQ0_RICCO (Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus communis GN=RCOM_1426230 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.1e-95
Identity = 185/228 (81.14%), Postives = 202/228 (88.60%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQN----QNETASSSLQAFSAALA 60
           MSLTIP+NLSKP+LKPK  SSL  +S   S I+CSA+Q     + +++ S LQAFSAALA
Sbjct: 1   MSLTIPSNLSKPMLKPKLGSSLTPRS---SMIVCSASQTPSTQEKDSSKSPLQAFSAALA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAPLPAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI+A+V
Sbjct: 61  LSSILLSAPLPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAIKATV 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLI 180
           EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 181 AIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           AIR +KKP  KEIIIDVPLAT L+FRGFSWP+AAYRE VNGEL+ KDV
Sbjct: 181 AIRGEKKPAMKEIIIDVPLATGLIFRGFSWPVAAYREFVNGELVVKDV 225

[Close]
BLAST of CmaCh18G005380 vs. TrEMBL
Match: Q9XQB4_VIGRR (Photosystem I reaction center subunit III OS=Vigna radiata var. radiata GN=CipPsaF PE=2 SV=2)

HSP 1 Score: 352.8 bits (904), Expect = 3.0e-94
Identity = 189/229 (82.53%), Postives = 202/229 (88.21%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPL-LKPKFSSSLASKSRPSSSILCSATQNQNE----TASSSLQAFSAAL 60
           MSLTIPTNLSKP  L+PK    L SK RP+  I+CSAT N N       SS L+AFSAAL
Sbjct: 1   MSLTIPTNLSKPAALRPK----LGSKLRPT--IVCSATPNNNSDNNNNISSDLKAFSAAL 60

Query: 61  ALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQAS 120
           ALSSILLSAPLPAVADI+GLTPCK+SKQFAKREKQ IKKLESSLK YAPDSAPALAI+AS
Sbjct: 61  ALSSILLSAPLPAVADISGLTPCKESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKAS 120

Query: 121 VEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYL 180
           VEKTKRRF  Y KQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYL
Sbjct: 121 VEKTKRRFDNYAKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYL 180

Query: 181 IAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           IAIRD+KKPT KEIIIDVPLA+ L+FRGFSWP+AAYREL+NG+LIAKDV
Sbjct: 181 IAIRDEKKPTMKEIIIDVPLASRLLFRGFSWPVAAYRELINGDLIAKDV 223

[Close]
BLAST of CmaCh18G005380 vs. TAIR10
Match: AT1G31330.1 (AT1G31330.1 photosystem I subunit F)

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-86
Identity = 161/224 (71.88%), Postives = 185/224 (82.59%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSI 60
           MSLTIP NL   +L P+ + SL      SS+    +    + +   S++AFSAA+ALSSI
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQSMKAFSAAVALSSI 60

Query: 61  LLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTK 120
           LLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAP+SAPALA+ A +EKTK
Sbjct: 61  LLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTK 120

Query: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRF  YGK GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIAI  
Sbjct: 121 RRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISG 180

Query: 181 DKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           +KKP  KEIIIDVPLA+ ++FRGF WP+AAYRE +NG+LIAKDV
Sbjct: 181 EKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221

[Close]
BLAST of CmaCh18G005380 vs. NCBI nr
Match: gi|449465832|ref|XP_004150631.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 1.0e-111
Identity = 209/224 (93.30%), Postives = 219/224 (97.77%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNETASSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPKFSS LA K +PSSSILCSA+QNQN+  SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQNQNTSSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTK 120
           LLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLESSLKNYAPDSAPALAI+A++EKTK
Sbjct: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEKTK 120

Query: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           +KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 EKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 224

[Close]
BLAST of CmaCh18G005380 vs. NCBI nr
Match: gi|659118354|ref|XP_008459076.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis melo])

HSP 1 Score: 398.3 bits (1022), Expect = 9.0e-108
Identity = 205/226 (90.71%), Postives = 217/226 (96.02%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSA--TQNQNETASSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA   QNQ++  SSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEK 120
           SILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++EK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           R++KKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGELIAKDV
Sbjct: 181 RNEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV 226

[Close]
BLAST of CmaCh18G005380 vs. NCBI nr
Match: gi|595867592|ref|XP_007211985.1| (hypothetical protein PRUPE_ppa010953mg [Prunus persica])

HSP 1 Score: 369.0 bits (946), Expect = 5.8e-99
Identity = 195/230 (84.78%), Postives = 208/230 (90.43%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNET-----ASSSLQAFSAAL 60
           MSLTIPTNLSKP+LKPKFSS LA+K  P + + CSA+Q  N T      +S +QAFSAAL
Sbjct: 1   MSLTIPTNLSKPMLKPKFSSPLATKL-PRTVVFCSASQTPNPTPEKISTASPMQAFSAAL 60

Query: 61  ALSSILL-SAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQA 120
           ALSSILL SAP+PAVADIAGLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI A
Sbjct: 61  ALSSILLGSAPMPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAINA 120

Query: 121 SVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           ++EKT+RRFA YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTQRRFANYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           LIAIRDDKKPTQKEIIIDVPLATSLVFRGF WP+AAYRELVNGELIAKDV
Sbjct: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFIWPVAAYRELVNGELIAKDV 229

[Close]
BLAST of CmaCh18G005380 vs. NCBI nr
Match: gi|645238531|ref|XP_008225720.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Prunus mume])

HSP 1 Score: 365.9 bits (938), Expect = 4.9e-98
Identity = 193/230 (83.91%), Postives = 207/230 (90.00%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNET-----ASSSLQAFSAAL 60
           MSLTIPTNLSKP+LKPK SS LA+K  P + + CSA+Q  N T      +S +QAFSAAL
Sbjct: 1   MSLTIPTNLSKPMLKPKLSSPLATKL-PRTMVFCSASQTPNPTPEKISTASPMQAFSAAL 60

Query: 61  ALSSILL-SAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQA 120
           ALSSILL SAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI A
Sbjct: 61  ALSSILLGSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAINA 120

Query: 121 SVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           ++EKT+RRFA YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTQRRFANYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           LIAIRDDKKPTQKEIIIDVPLATSLVFRGF WP+AAYRELVNGELIAKDV
Sbjct: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFIWPVAAYRELVNGELIAKDV 229

[Close]
BLAST of CmaCh18G005380 vs. NCBI nr
Match: gi|694392906|ref|XP_009371913.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 362.5 bits (929), Expect = 5.5e-97
Identity = 188/230 (81.74%), Postives = 208/230 (90.43%), Query Frame = 1 

Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNET-----ASSSLQAFSAAL 60
           MSLTIPTNLSKP+ +PK SS +A+K  P + + CSA+QN N T      +S +QAFS AL
Sbjct: 1   MSLTIPTNLSKPMFQPKLSSPVATKL-PRTVVFCSASQNPNPTPEKISTASPMQAFSTAL 60

Query: 61  ALSSILL-SAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQA 120
           ALSSIL+ SAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI+A
Sbjct: 61  ALSSILIGSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAIKA 120

Query: 121 SVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           ++EKT+RRF+ YGKQGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTQRRFSNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPIAAYRELVNGELIAKDV 225
           LIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWP+AAYRELVNGEL+AKDV
Sbjct: 181 LIAIRDDKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELVAKDV 229

The following BLAST results are available for this feature:
BLAST of CmaCh18G005380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSAF_ARATH3.7e-8571.88Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana... [more]
PSAF_FLATR4.1e-8473.68Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia G... [more]
PSAF_SPIOL1.4e-8172.05Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN... [more]
PSAF_HORVU1.2e-7569.09Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=P... [more]
PSAF_CHLRE5.4e-5253.08Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinha... [more]
BLAST of CmaCh18G005380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M3X2_CUCSA7.1e-11293.30Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714680 PE=4 SV=1[more]
M5WHJ3_PRUPE4.1e-9984.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010953mg PE=4 SV=1[more]
A0A067KCM0_JATCU1.4e-9681.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07458 PE=4 SV=1[more]
B9RRQ0_RICCO2.1e-9581.14Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus comm... [more]
Q9XQB4_VIGRR3.0e-9482.53Photosystem I reaction center subunit III OS=Vigna radiata var. radiata GN=CipPs... [more]
BLAST of CmaCh18G005380 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31330.12.1e-8671.88 photosystem I subunit F[more]
BLAST of CmaCh18G005380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465832|ref|XP_004150631.1|1.0e-11193.30PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis sat... [more]
gi|659118354|ref|XP_008459076.1|9.0e-10890.71PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis mel... [more]
gi|595867592|ref|XP_007211985.1|5.8e-9984.78hypothetical protein PRUPE_ppa010953mg [Prunus persica][more]
gi|645238531|ref|XP_008225720.1|4.9e-9883.91PREDICTED: photosystem I reaction center subunit III, chloroplastic [Prunus mume... [more]
gi|694392906|ref|XP_009371913.1|5.5e-9781.74PREDICTED: photosystem I reaction center subunit III, chloroplastic-like [Pyrus ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003666PSI_PsaF
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
GO:0009538photosystem I reaction center
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015979 photosynthesis
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G005380.1CmaCh18G005380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003666Photosystem I PsaF, reaction centre subunit IIIGENE3DG3DSA:1.10.8.110coord: 71..223
score: 1.3
IPR003666Photosystem I PsaF, reaction centre subunit IIIPFAMPF02507PSI_PsaFcoord: 58..223
score: 1.2
IPR003666Photosystem I PsaF, reaction centre subunit IIIunknownSSF81536Subunit III of photosystem I reaction centre, PsaFcoord: 71..223
score: 1.01
NoneNo IPR availablePANTHERPTHR34939FAMILY NOT NAMEDcoord: 3..223
score: 2.8E
NoneNo IPR availablePANTHERPTHR34939:SF1PHOTOSYSTEM I REACTION CENTER SUBUNIT III, CHLOROPLASTICcoord: 3..223
score: 2.8E