Carg25403 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25403
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem I reaction center subunit III
Location	Cucurbita_argyrosperma_scaffold_232 : 327593 .. 329024 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCACCCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTTCCCGCTGTCGCCGACATCGCCGGGCTCACCCCCTGCAAGGATTCCAAGCAATTCGCCAAGAGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGGTGAGTTTATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGAAGCTATTTGATTGCTATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTTCCTTTGGCTACTAGCTTGGTGTTCAGAGGCTTTAGCTGGCCTATTGCTGCTTACAGAGAGCTTGTCAATGGCGACCTCATTGCCAAGGATGTCTAATTCTCCTCCGACAGGTATTGCTTCTTTGGCTCAAAGTCTTTTGTGTTATGAGCTCTGTTGTTTATGTTCTTTGCCAATGTTCTTATTTGGTTCATGTTGCTTTGTTGTGGTTGTGACAGAGATAGGGAAAGTGGAAGAGAGATTGACTTCTGGGATGGGGGTTGGTGAAATATGTGTATTTCAATTGGGAACTTGAGATGAGTTTATGCAATGGTTGGTTGTATTTTGTTCACTACTTCCCCATTCTTTGCATTATGTGTACCCTAAATTTGTAAAGATCGTGACTTGGTGCGACTCGAACATTATGTGTTTATAGTTGCAACGTTTCTCTTATTAGACGTCTTATTGATAAGTAGATGAGTAGTTTCTGCTTAAAGGATAGCGTTCTACTCTATAAACGTTTATAAATGAATCTTAATCGAGTGGTTCATTAGAGAATTATTGGTACTGGAGATATGAAATGTAATTATAGGGACAAAACAAACTTTTAAATGAATTGTAATTACGAACAACTCATAAAGAATCAACTTGCATGAAATGATTATTTCCATGGATATAACTTGCGGGACAAAATTAGGGAGGTCGAGGAGGCCACAGAGGCACGTAGTAGCCCACATCGGGCAGGTAAGTCTGACATTGTTTGGTCATCTGGCAATCAATTTATTTTACTTTGAATTCGCACATTCCATCACAGAGGGATTTGTTGAGCAAACTCAGTTAGAGTTAGAGCTTCTTGAGTATATACTTA

mRNA sequence

ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCACCCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTTCCCGCTGTCGCCGACATCGCCGGGCTCACCCCCTGCAAGGATTCCAAGCAATTCGCCAAGAGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGAGATAGGGAAAGTGGAAGAGAGATTGACTTCTGGGATGGGGGTTGGTGAAATATGTGTATTTCAATTGGGAACTTGAGATGAGTTTATGCAATGGTTGGTTGTATTTTGTTCACTACTTCCCCATTCTTTGCATTATGTGTACCCTAAATTTGTAAAGATCGTGACTTGGTGCGACTCGAACATTATGTGTTTATAGTTGCAACGTTTCTCTTATTAGACGTCTTATTGATAAGTAGATGAGTAGTTTCTGCTTAAAGGATAGCGTTCTACTCTATAAACGTTTATAAATGAATCTTAATCGAGTGGTTCATTAGAGAATTATTGGTACTGGAGATATGAAATGTAATTATAGGGACAAAACAAACTTTTAAATGAATTGTAATTACGAACAACTCATAAAGAATCAACTTGCATGAAATGATTATTTCCATGGATATAACTTGCGGGACAAAATTAGGGAGGTCGAGGAGGCCACAGAGGCACGTAGTAGCCCACATCGGGCAGGTAAGTCTGACATTGTTTGGTCATCTGGCAATCAATTTATTTTACTTTGAATTCGCACATTCCATCACAGAGGGATTTGTTGAGCAAACTCAGTTAGAGTTAGAGCTTCTTGAGTATATACTTA

Coding sequence (CDS)

ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCACCCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTTCCCGCTGTCGCCGACATCGCCGGGCTCACCCCCTGCAAGGATTCCAAGCAATTCGCCAAGAGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCCCCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGCGACCAGAGGCATTGGGAGATAGGGAAAGTGGAAGAGAGATTGACTTCTGGGATGGGGGTTGGTGAAATATGTGTATTTCAATTGGGAACTTGA

Protein sequence

MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWEIGKVEERLTSGMGVGEICVFQLGT

Homology

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BLAST of Carg25403 vs. NCBI nr
Match: XP_022955103.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita moschata])

HSP 1 Score: 286.2 bits (731), Expect = 7.7e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 153

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BLAST of Carg25403 vs. NCBI nr
Match: XP_023542340.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 7.7e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 153

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BLAST of Carg25403 vs. NCBI nr
Match: XP_022994929.1 (photosystem I reaction center subunit III, chloroplastic [Cucurbita maxima])

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 149/153 (97.39%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN   E ASSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN---ETASSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE
Sbjct: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 150

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BLAST of Carg25403 vs. NCBI nr
Match: XP_008459076.1 (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQS-QNPSSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 152

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BLAST of Carg25403 vs. NCBI nr
Match: XP_007211985.1 (photosystem I reaction center subunit III, chloroplastic [Prunus persica] >ONI11413.1 hypothetical protein PRUPE_4G105600 [Prunus persica])

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 126/156 (80.77%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENAS--SSLQAFSAAL 60
           MSLTIPTNLSKP+LKPKFSS LA+K  P + + CSA+Q  N +PE  S  S +QAFSAAL
Sbjct: 1   MSLTIPTNLSKPMLKPKFSSPLATK-LPRTVVFCSASQTPNPTPEKISTASPMQAFSAAL 60

Query: 61  ALSSILL-SAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQA 120
           ALSSILL SAP+PAVADIAGLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI A
Sbjct: 61  ALSSILLGSAPMPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAINA 120

Query: 121 SVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           ++EKT+RRFA YGKQGLLCG+DGLPHLIVSGDQRHW
Sbjct: 121 TIEKTQRRFANYGKQGLLCGSDGLPHLIVSGDQRHW 155

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BLAST of Carg25403 vs. TAIR10
Match: AT1G31330.1 (photosystem I subunit F)

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-48
Identity = 105/154 (68.18%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALA 60
           MSLTIP NL   +L P+ + SL  S  + S+  +CS  ++ + +P+    S++AFSAA+A
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQ----SMKAFSAAVA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAP+SAPALA+ A +
Sbjct: 61  LSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQI 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           EKTKRRF  YGK GLLCG+DGLPHLIV+GDQRHW
Sbjct: 121 EKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHW 147

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BLAST of Carg25403 vs. Swiss-Prot
Match: sp|Q9SHE8|PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAF PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.2e-47
Identity = 105/154 (68.18%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALA 60
           MSLTIP NL   +L P+ + SL  S  + S+  +CS  ++ + +P+    S++AFSAA+A
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQ----SMKAFSAAVA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAP+SAPALA+ A +
Sbjct: 61  LSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQI 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           EKTKRRF  YGK GLLCG+DGLPHLIV+GDQRHW
Sbjct: 121 EKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHW 147

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BLAST of Carg25403 vs. Swiss-Prot
Match: sp|P46486|PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia OX=4227 GN=PSAF PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.7e-44
Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 1   MSLTIPTNLSKPL-LKPKFSSSLASKSR-PSSSILCSATQNQNGSPENASSSLQAFSAAL 60
           MS TI T+  +PL +    SS + SKS+  S+SI+CS + ++  +  +  SSL+A SAAL
Sbjct: 1   MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAAL 60

Query: 61  ALSSILLSA---PLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAI 120
           ALSSIL+S+    LPA ADI+GLTPCK+SKQFAKREKQ +KKLESSLK YAPDSAPALAI
Sbjct: 61  ALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120

Query: 121 QASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           +A++EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHW
Sbjct: 121 KATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHW 158

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BLAST of Carg25403 vs. Swiss-Prot
Match: sp|P12355|PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAF PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.0e-40
Identity = 102/159 (64.15%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 1   MSLTIPTNLSKPL-LKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQA-FSAAL 60
           MS TIPTNL KPL  KPK  SS  S   P S I+C    +Q    +   + + A  +AAL
Sbjct: 1   MSFTIPTNLYKPLATKPKHLSS--SSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAAL 60

Query: 61  ALSSILLS----APLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALA 120
           ALSS+LLS    AP  A+ADIAGLTPCK+SKQFAKREKQ +KKL++SLK YA DSAPALA
Sbjct: 61  ALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALA 120

Query: 121 IQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           I+A++EKTK+RF  YGK GLLCG+DGLPHLIVSGDQRHW
Sbjct: 121 IKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHW 157

[Close]

BLAST of Carg25403 vs. Swiss-Prot
Match: sp|P13192|PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAF PE=1 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-33
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 74  DIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQG 133
           DIAGLTPCK+SK FAKREKQ +KKL SSLK YAPDSAPALAIQA+++KTKRRF  YGK G
Sbjct: 78  DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFG 137

Query: 134 LLCGADGLPHLIVSGDQRHW 154
           LLCG+DGLPHLIVSGDQRHW
Sbjct: 138 LLCGSDGLPHLIVSGDQRHW 157

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BLAST of Carg25403 vs. Swiss-Prot
Match: sp|P12356|PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=PSAF PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-22
Identity = 64/129 (49.61%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 17  KFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIA 76
           K SS +A  SR +  + C A +N     E AS    A +A+          P  A+ADIA
Sbjct: 11  KASSRVAPSSRRALRVACQAQKN-----ETASKVGTALAASAXXXXXXXXXPSAAMADIA 70

Query: 77  GLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLC 136
           GLTPC +SK +AK EK+++K LE  LK Y  DSAPA+A++A++E+TK RFA Y K GLLC
Sbjct: 71  GLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLC 130

Query: 137 GADGLPHLI 146
           G DGLPHLI
Sbjct: 131 GNDGLPHLI 134

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BLAST of Carg25403 vs. TrEMBL
Match: tr|A0A1S3C8V6|A0A1S3C8V6_CUCME (photosystem I reaction center subunit III, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498296 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.8e-63
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALAL 60
           MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALAL
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQS-QNPSSSLQAFSAALAL 60

Query: 61  SSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASVE 120
           SSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES+LKNYAPDSAPALAI+A++E
Sbjct: 61  SSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIE 120

Query: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Sbjct: 121 KTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 152

[Close]

BLAST of Carg25403 vs. TrEMBL
Match: tr|M5WHJ3|M5WHJ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G105600 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.2e-56
Identity = 126/156 (80.77%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENAS--SSLQAFSAAL 60
           MSLTIPTNLSKP+LKPKFSS LA+K  P + + CSA+Q  N +PE  S  S +QAFSAAL
Sbjct: 1   MSLTIPTNLSKPMLKPKFSSPLATK-LPRTVVFCSASQTPNPTPEKISTASPMQAFSAAL 60

Query: 61  ALSSILL-SAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQA 120
           ALSSILL SAP+PAVADIAGLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI A
Sbjct: 61  ALSSILLGSAPMPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAINA 120

Query: 121 SVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           ++EKT+RRFA YGKQGLLCG+DGLPHLIVSGDQRHW
Sbjct: 121 TIEKTQRRFANYGKQGLLCGSDGLPHLIVSGDQRHW 155

[Close]

BLAST of Carg25403 vs. TrEMBL
Match: tr|A0A067KCM0|A0A067KCM0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07458 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.4e-55
Identity = 123/154 (79.87%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSS-LQAFSAALA 60
           MSLTIPTNLSKP+LKPK  SSL       S I+CSA+QN +   +++S S LQAFSAALA
Sbjct: 1   MSLTIPTNLSKPMLKPKLGSSLNPAKSSRSLIVCSASQNSSTQEKDSSKSPLQAFSAALA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLESSLK YAPDSAPALAIQA++
Sbjct: 61  LSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPALAIQATI 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHW
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHW 154

[Close]

BLAST of Carg25403 vs. TrEMBL
Match: tr|B9RRQ0|B9RRQ0_RICCO (Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus communis OX=3988 GN=RCOM_1426230 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 123/154 (79.87%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSS-LQAFSAALA 60
           MSLTIP+NLSKP+LKPK  SSL  +   SS I+CSA+Q  +   +++S S LQAFSAALA
Sbjct: 1   MSLTIPSNLSKPMLKPKLGSSLTPR---SSMIVCSASQTPSTQEKDSSKSPLQAFSAALA 60

Query: 61  LSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQASV 120
           LSSILLSAPLPAVADI+GLTPCKDSKQFAKREKQQIKKLESSLK YAPDSAPALAI+A+V
Sbjct: 61  LSSILLSAPLPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAIKATV 120

Query: 121 EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHW
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHW 151

[Close]

BLAST of Carg25403 vs. TrEMBL
Match: tr|A0A2I4G4X8|A0A2I4G4X8_9ROSI (photosystem I reaction center subunit III, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109004736 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-53
Identity = 124/157 (78.98%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPE---NASSSLQAFSAA 60
           MSLTIPTNLSKP+LKPK  S L S+SR  S ILCS+  +QN +PE   +AS+SLQAFSAA
Sbjct: 1   MSLTIPTNLSKPMLKPKLGSPLTSRSR--SMILCSSA-SQNSNPEKTSSASTSLQAFSAA 60

Query: 61  LALSSILLSAPLP-AVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQ 120
           LALSSI+LSAP+P A+ADIAGLTPCK+SKQFAKREKQQIKKLESSLK YAPDSAPALAI+
Sbjct: 61  LALSSIILSAPVPAAMADIAGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPALAIK 120

Query: 121 ASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW 154
           A++EKTKRRF  YGK GLLCG+DGLPHLIVSGDQRHW
Sbjct: 121 ATIEKTKRRFDNYGKAGLLCGSDGLPHLIVSGDQRHW 154

The following BLAST results are available for this feature:

BLAST of Carg25403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955103.1	7.7e-74	100.00	photosystem I reaction center subunit III, chloroplastic [Cucurbita moschata]	[more]
XP_023542340.1	7.7e-74	100.00	photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. ...	[more]
XP_022994929.1	1.1e-69	97.39	photosystem I reaction center subunit III, chloroplastic [Cucurbita maxima]	[more]
XP_008459076.1	2.7e-63	88.89	PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis mel...	[more]
XP_007211985.1	1.2e-55	80.77	photosystem I reaction center subunit III, chloroplastic [Prunus persica] >ONI11...	[more]

BLAST of Carg25403 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31330.1	2.3e-48	68.18	photosystem I subunit F	[more]

BLAST of Carg25403 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHE8\|PSAF_ARATH	4.2e-47	68.18	Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|P46486\|PSAF_FLATR	5.7e-44	66.46	Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia O...	[more]
sp\|P12355\|PSAF_SPIOL	5.0e-40	64.15	Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea OX...	[more]
sp\|P13192\|PSAF_HORVU	3.4e-33	83.75	Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare OX=4...	[more]
sp\|P12356\|PSAF_CHLRE	1.6e-22	49.61	Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinha...	[more]

BLAST of Carg25403 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8V6\|A0A1S3C8V6_CUCME	1.8e-63	88.89	photosystem I reaction center subunit III, chloroplastic OS=Cucumis melo OX=3656...	[more]
tr\|M5WHJ3\|M5WHJ3_PRUPE	8.2e-56	80.77	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G105600 PE=4 SV=1	[more]
tr\|A0A067KCM0\|A0A067KCM0_JATCU	2.4e-55	79.87	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07458 PE=4 SV=1	[more]
tr\|B9RRQ0\|B9RRQ0_RICCO	3.4e-54	79.87	Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus comm...	[more]
tr\|A0A2I4G4X8\|A0A2I4G4X8_9ROSI	1.7e-53	78.98	photosystem I reaction center subunit III, chloroplastic-like OS=Juglans regia O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009538	photosystem I reaction center
GO:0009522	photosystem I

Vocabulary: **INTERPRO**
Term	Definition
IPR003666	PSI_PsaF
IPR036577	PSI_PsaF_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25403-RA	Carg25403-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	GENE3D	G3DSA:1.10.8.110		coord: 74..157 e-value: 1.2E-29 score: 105.0
IPR036577	Photosystem I PsaF, reaction centre subunit III superfamily	SUPERFAMILY	SSF81536	Subunit III of photosystem I reaction centre, PsaF	coord: 74..153
IPR003666	Photosystem I PsaF, reaction centre subunit III	PFAM	PF02507	PSI_PsaF	coord: 61..153 e-value: 5.3E-39 score: 133.7
IPR003666	Photosystem I PsaF, reaction centre subunit III	PANTHER	PTHR34939	FAMILY NOT NAMED	coord: 1..153
None	No IPR available	PANTHER	PTHR34939:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT III, CHLOROPLASTIC	coord: 1..153

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25403	Cla009181	Watermelon (97103) v1	carwmB0447
Carg25403	Csa1G714680	Cucumber (Chinese Long) v2	carcuB0482
Carg25403	MELO3C021788	Melon (DHL92) v3.5.1	carmeB0453
Carg25403	ClCG01G009000	Watermelon (Charleston Gray)	carwcgB0439
Carg25403	CSPI01G34820	Wild cucumber (PI 183967)	carcpiB0487
Carg25403	Cucsa.236610	Cucumber (Gy14) v1	carcgyB0518
Carg25403	CmaCh18G005380	Cucurbita maxima (Rimu)	carcmaB0623
Carg25403	CmoCh18G005160	Cucurbita moschata (Rifu)	carcmoB0606
Carg25403	Lsi02G010140	Bottle gourd (USVL1VR-Ls)	carlsiB408
Carg25403	Cp4.1LG09g07060	Cucurbita pepo (Zucchini)	carcpeB0629
Carg25403	CsGy1G033300	Cucumber (Gy14) v2	carcgybB0459
Carg25403	MELO3C021788.2	Melon (DHL92) v3.6.1	carmedB0456
Carg25403	CsaV3_1G046680	Cucumber (Chinese Long) v3	carcucB0484
Carg25403	Cla97C01G009260	Watermelon (97103) v2	carwmbB0470
Carg25403	Bhi08G000781	Wax gourd	carwgoB0541

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25403	Silver-seed gourd	carcarB420
Carg25403	Cucurbita maxima (Rimu)	carcmaB0622
Carg25403	Cucurbita moschata (Rifu)	carcmoB0605
Carg25403	Cucurbita pepo (Zucchini)	carcpeB0630
Carg25403	Melon (DHL92) v3.5.1	carmeB0454
Carg25403	Melon (DHL92) v3.6.1	carmedB0457