Cucsa.236610 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCAAAACCACCTTCTCCACCACTAATCTCATGATCCTCTCTGAATCTAAAACCGTTCCCTCCACACTCTTTCTCCAAATCTCCATCTTCTTCTTCCTGCAATTCCCAATTCCTTCGAACCCATTTCAACAATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTTAGCTCCCCACTCGCCTTGAAGCCAAAACCCTCCTCATCTATTCTCTGCTCCGCCTCCCAAAATCAAAACCAAAACACCTCTTCCTCTCTTCAAGCCTTCTCCGCTGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCCGCCGTCGCCGACATCTCCGGTCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTGAGTCTTCTTTGAAGAACTACGCCCCGGATAGCGCCCCGGCGCTTGCCATCAAAGCCACGATCGAAAAGACAAAGAGGCGATTTGCCTTCTATGGGAAACAAGGGCTTCTTTGTGGTGCTGATGGCTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATTACTCCTGGATTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGAAAAGAAACCTACCCAAAAGGAGATTATCATTGATGTTCCTTTGGCCACTAGTTTGGTGTTTAGAGGCTTCAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAAGATGTCTAATTCTTCTACTTCAGGTACTGCTCTTCTTTTTGTTGCAGTTAAGTTGAGTGATTCAATGGAGTATTTGAATTGGTTGTTATGTCTCTGAATTGCTTTATGCTAATTTTCAAGCTCATAAGTGAATATACCATAAAAATGGATTTAGCTATGTTTCTTTAGGAGTGGTGTTTCCATGGCCAATCTGCTCCTTTGATTATTGGGTATTCCAAGTGTGGTTCATAAAGTGTTAGAGCACATAATTCTATGTCTTATTCATCATAACATCACTTACTTCTTAATTGATACTGATATTGATATTTGTTTGTTGGTATCGGTGATTTTCTAGTTAGAAGTGCAGTGAAGGTCTTACAATGTAATCGATGTACTTCAACTTCTTATAATGTAATGGATGTGATTATGTTTTTAGCTTTAATGGTGATTTAACACGAAGAACAAAAAGATGGTCTTTATTTATTATTGGTTGTCTTTTTTTTTCTTTTTTATGAATTCTCTCTTTATGTATGTTTTACCAACGGCCAATCTTCTCATTTGTTTCATATTGTTTTGTTGTGGTATTGACAGAGATAGGGAAAGTGGAAGTGGAATTGAGTTTTGGAGGATATGGAGGGGAATGGCATGGAGTTTGTGAAATATTTGTGTATTTAATTTGGAAACTTGAGATGAGTATATGTAATGGTTGGTTTGTGTTGGATACAAGGGCAATCTATTCTTTTCACTTCCCCTTTCTTTTGTACTCAAAATTCTCTTAACATGATTGACCCATCAATCTTTTCTTAAGTAATTAATTAGAAATTTTCATTCAAATTCTTAA TCCAAAACCACCTTCTCCACCACTAATCTCATGATCCTCTCTGAATCTAAAACCGTTCCCTCCACACTCTTTCTCCAAATCTCCATCTTCTTCTTCCTGCAATTCCCAATTCCTTCGAACCCATTTCAACAATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTTAGCTCCCCACTCGCCTTGAAGCCAAAACCCTCCTCATCTATTCTCTGCTCCGCCTCCCAAAATCAAAACCAAAACACCTCTTCCTCTCTTCAAGCCTTCTCCGCTGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCCGCCGTCGCCGACATCTCCGGTCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTGAGTCTTCTTTGAAGAACTACGCCCCGGATAGCGCCCCGGCGCTTGCCATCAAAGCCACGATCGAAAAGACAAAGAGGCGATTTGCCTTCTATGGGAAACAAGGGCTTCTTTGTGGTGCTGATGGCTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATTACTCCTGGATTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGAAAAGAAACCTACCCAAAAGGAGATTATCATTGATGTTCCTTTGGCCACTAGTTTGGTGTTTAGAGGCTTCAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAAGATGTCTAATTCTTCTACTTCAGAGATAGGGAAAGTGGAAGTGGAATTGAGTTTTGGAGGATATGGAGGGGAATGGCATGGAGTTTGTGAAATATTTGTGTATTTAATTTGGAAACTTGAGATGAGTATATGTAATGGTTGGTTTGTGTTGGATACAAGGGCAATCTATTCTTTTCACTTCCCCTTTCTTTTGTACTCAAAATTCTCTTAACATGATTGACCCATCAATCTTTTCTTAAGTAATTAATTAGAAATTTTCATTCAAATTCTTAA ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTTAGCTCCCCACTCGCCTTGAAGCCAAAACCCTCCTCATCTATTCTCTGCTCCGCCTCCCAAAATCAAAACCAAAACACCTCTTCCTCTCTTCAAGCCTTCTCCGCTGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCTCCTCTCCCCGCCGTCGCCGACATCTCCGGTCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTGAGTCTTCTTTGAAGAACTACGCCCCGGATAGCGCCCCGGCGCTTGCCATCAAAGCCACGATCGAAAAGACAAAGAGGCGATTTGCCTTCTATGGGAAACAAGGGCTTCTTTGTGGTGCTGATGGCTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATTACTCCTGGATTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGAAAAGAAACCTACCCAAAAGGAGATTATCATTGATGTTCCTTTGGCCACTAGTTTGGTGTTTAGAGGCTTCAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAAGATGTCTAA MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQNQNTSSSLQAFSAALALSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATSLVFRGFSWPVAAYRELVNGELIAKDV*
BLAST of Cucsa.236610 vs. Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1) HSP 1 Score: 329.3 bits (843), Expect = 3.2e-89 Identity = 175/228 (76.75%), Postives = 194/228 (85.09%), Query Frame = 1
BLAST of Cucsa.236610 vs. Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1) HSP 1 Score: 326.6 bits (836), Expect = 2.1e-88 Identity = 167/225 (74.22%), Postives = 190/225 (84.44%), Query Frame = 1
BLAST of Cucsa.236610 vs. Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 2.2e-85 Identity = 168/229 (73.36%), Postives = 186/229 (81.22%), Query Frame = 1
BLAST of Cucsa.236610 vs. Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2) HSP 1 Score: 295.8 bits (756), Expect = 3.9e-79 Identity = 149/215 (69.30%), Postives = 170/215 (79.07%), Query Frame = 1
BLAST of Cucsa.236610 vs. Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 1.4e-52 Identity = 111/211 (52.61%), Postives = 144/211 (68.25%), Query Frame = 1
BLAST of Cucsa.236610 vs. TrEMBL
Match: A0A0A0M3X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714680 PE=4 SV=1) HSP 1 Score: 443.4 bits (1139), Expect = 1.7e-121 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1
BLAST of Cucsa.236610 vs. TrEMBL
Match: M5WHJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010953mg PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 3.0e-102 Identity = 197/230 (85.65%), Postives = 209/230 (90.87%), Query Frame = 1
BLAST of Cucsa.236610 vs. TrEMBL
Match: A0A067KCM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07458 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 1.1e-99 Identity = 190/228 (83.33%), Postives = 200/228 (87.72%), Query Frame = 1
BLAST of Cucsa.236610 vs. TrEMBL
Match: B9RRQ0_RICCO (Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus communis GN=RCOM_1426230 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 2.6e-98 Identity = 188/228 (82.46%), Postives = 200/228 (87.72%), Query Frame = 1
BLAST of Cucsa.236610 vs. TrEMBL
Match: Q9XQB4_VIGRR (Photosystem I reaction center subunit III OS=Vigna radiata var. radiata GN=CipPsaF PE=2 SV=2) HSP 1 Score: 361.7 bits (927), Expect = 6.5e-97 Identity = 189/229 (82.53%), Postives = 200/229 (87.34%), Query Frame = 1
BLAST of Cucsa.236610 vs. TAIR10
Match: AT1G31330.1 (AT1G31330.1 photosystem I subunit F) HSP 1 Score: 326.6 bits (836), Expect = 1.2e-89 Identity = 167/225 (74.22%), Postives = 190/225 (84.44%), Query Frame = 1
BLAST of Cucsa.236610 vs. NCBI nr
Match: gi|449465832|ref|XP_004150631.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis sativus]) HSP 1 Score: 443.4 bits (1139), Expect = 2.4e-121 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1
BLAST of Cucsa.236610 vs. NCBI nr
Match: gi|659118354|ref|XP_008459076.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis melo]) HSP 1 Score: 427.6 bits (1098), Expect = 1.4e-116 Identity = 218/226 (96.46%), Postives = 222/226 (98.23%), Query Frame = 1
BLAST of Cucsa.236610 vs. NCBI nr
Match: gi|595867592|ref|XP_007211985.1| (hypothetical protein PRUPE_ppa010953mg [Prunus persica]) HSP 1 Score: 379.4 bits (973), Expect = 4.3e-102 Identity = 197/230 (85.65%), Postives = 209/230 (90.87%), Query Frame = 1
BLAST of Cucsa.236610 vs. NCBI nr
Match: gi|645238531|ref|XP_008225720.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Prunus mume]) HSP 1 Score: 378.6 bits (971), Expect = 7.4e-102 Identity = 197/230 (85.65%), Postives = 208/230 (90.43%), Query Frame = 1
BLAST of Cucsa.236610 vs. NCBI nr
Match: gi|694392906|ref|XP_009371913.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic-like [Pyrus x bretschneideri]) HSP 1 Score: 376.7 bits (966), Expect = 2.8e-101 Identity = 193/230 (83.91%), Postives = 209/230 (90.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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