ClCG01G009000 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G009000
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Photosystem I reaction center subunit III
Location	CG_Chr01 : 11161191 .. 11162653 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGTTCCCCATTCCCCTTAAAACCAAAACCCTCTTCATCAATCCTCTGCTCCGCCACTCATAATCAAGATCAAAACCCTTCATCTTCTCTTCAGGCCTTCTCCGCCGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGTTGCCGACATCTCCGGCCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTCAGTCTTCTTTGAAGAATTACGCCCCCGACAGCGCTCCGGCGCTTGCTCTGAAAGCCACGGTTGAGAAGACGAAGAGACGATTCGCATTTTATGGGAATCAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTGCCTTTGGCTACCGGTTTGGTCTTCAGAGGCTTCAGCTGGCCTGTTGCTGCTTACAGAGAGCTTGTCAATGGTGAACTCATTGCCAAGGATGTCTAATTCTCCTCCTTCAGGTACTACTCCTATATATATATATATATGTATGTATAATATATGTACTGTAACTTTTAGGTCAATAGAGTATTAGGATAAACGGTTATGTGTTTGGATTGCTAGATTGTCATTTATGTTAGATTTGTTAGATGATATAATATTAAATTTGACTTTAGTCATCAGTTTGAGCTTTTAGATTGTGATTTAACAACATTGCTTTATGCTAATTTTCAAATTCATAAGTGAATGAGAGTTTTTTGAATATGAATAGACTTTGCTATGTTTCTTTAGGAGCTCTCTGTTGTTTCTCTGGCCAATCTTCTCAAGTTTGTTTAGTTTAGTGATTCACATAGTATTAGAGCATATGGTTTTGTGTTTTAATTGTCGTAACATCATTTCCTTCTTAATTGATATTGATATTTGTTTGTTGGTATTAGTGATTTTCGAGTCTTTAATGTAATCTATGTGCTTAAGCTTTGTGATTTAACATGGAAAACACAAAATGGTCTTACGTGTTTATTTATGAGATCTCTCTCTATGTTTTTCCAATGGACAATCTTCTGATTTGGTTCATGTTGTTTTGTTTTGGTTTTGACAGAGATAGGGAAAGTGGAAGAGGGATTGACTTTTGGAGGATATTGAGGAATGGGATGGGGTTTGTGAAATATTTGTGTATTTAATTTGGAAACTTGACATGAGTATATGTAATGGTTGGTTGTGCTGGATACAAGGGCAATCTATTCTTTTCACTTTCCCATTCTTTGTATTCAAAATTTTCTAACATTATTGACCCA

mRNA sequence

ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGTTCCCCATTCCCCTTAAAACCAAAACCCTCTTCATCAATCCTCTGCTCCGCCACTCATAATCAAGATCAAAACCCTTCATCTTCTCTTCAGGCCTTCTCCGCCGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGTTGCCGACATCTCCGGCCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTCAGTCTTCTTTGAAGAATTACGCCCCCGACAGCGCTCCGGCGCTTGCTCTGAAAGCCACGGTTGAGAAGACGAAGAGACGATTCGCATTTTATGGGAATCAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTGCCTTTGGCTACCGAGATAGGGAAAGTGGAAGAGGGATTGACTTTTGGAGGATATTGAGGAATGGGATGGGGTTTGTGAAATATTTGTGTATTTAATTTGGAAACTTGACATGAGTATATGTAATGGTTGGTTGTGCTGGATACAAGGGCAATCTATTCTTTTCACTTTCCCATTCTTTGTATTCAAAATTTTCTAACATTATTGACCCA

Coding sequence (CDS)

ATGTCTCTCACAATCCCCACTAACCTCTCAAAACCCCTCTTGAAGCCCAAATTGAGTTCCCCATTCCCCTTAAAACCAAAACCCTCTTCATCAATCCTCTGCTCCGCCACTCATAATCAAGATCAAAACCCTTCATCTTCTCTTCAGGCCTTCTCCGCCGCCTTGGCTCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGTTGCCGACATCTCCGGCCTCACCCCCTGCAAGGAATCCAAGCAATTCGCCAAGAGGGAGAAGCAGCAGATCAAGAAACTTCAGTCTTCTTTGAAGAATTACGCCCCCGACAGCGCTCCGGCGCTTGCTCTGAAAGCCACGGTTGAGAAGACGAAGAGACGATTCGCATTTTATGGGAATCAAGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAGTGGTGACCAGAGGCATTGGGGTGAGTTCATAACTCCTGGGTTCTTGTTCCTTTACATTGCTGGGTGGATTGGATGGGTTGGAAGGAGCTACTTAATCGCCATTAGAGATGATAAGAAGCCTACCCAGAAGGAGATTATCATTGATGTGCCTTTGGCTACCGAGATAGGGAAAGTGGAAGAGGGATTGACTTTTGGAGGATATTGA

Protein sequence

MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIIDVPLATEIGKVEEGLTFGGY

Homology

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BLAST of ClCG01G009000 vs. Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.2e-75
Identity = 152/207 (73.43%), Postives = 171/207 (82.61%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKL-SSPFPLKPK-PSSSILCSATHNQDQNPS---SSLQAFSAAL 60
           MS TI T+  +PL    L SSP   K K  S+SI+CS + ++  N +   SSL+A SAAL
Sbjct: 1   MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAAL 60

Query: 61  ALSSILLSAPLPAV---ADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALAL 120
           ALSSIL+S+ +PA+   ADISGLTPCKESKQFAKREKQ +KKL+SSLK YAPDSAPALA+
Sbjct: 61  ALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120

Query: 121 KATVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGR 180
           KAT+EKTKRRF  YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGR
Sbjct: 121 KATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGR 180

Query: 181 SYLIAIRDDKKPTQKEIIIDVPLATEI 200
           SYLIAIRD+KKPTQKEIIIDVPLAT++
Sbjct: 181 SYLIAIRDEKKPTQKEIIIDVPLATKL 207

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BLAST of ClCG01G009000 vs. Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-73
Identity = 144/200 (72.00%), Postives = 160/200 (80.00%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLK-PKPSSSILCSATHNQDQNPSSSLQAFSAALALSS 60
           MSLTIP NL   +L P+ +       PK S+  +CS   +    P S ++AFSAA+ALSS
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-MKAFSAAVALSS 60

Query: 61  ILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKT 120
           ILLSAP+PAVADISGLTPCK+SKQFAKREKQQIKKL+SSLK YAP+SAPALAL A +EKT
Sbjct: 61  ILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKT 120

Query: 121 KRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIR 180
           KRRF  YG  GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIAI 
Sbjct: 121 KRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIS 180

Query: 181 DDKKPTQKEIIIDVPLATEI 200
            +KKP  KEIIIDVPLA+ I
Sbjct: 181 GEKKPAMKEIIIDVPLASRI 196

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BLAST of ClCG01G009000 vs. Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.2e-71
Identity = 146/208 (70.19%), Postives = 161/208 (77.40%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLL-KPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAF----SAAL 60
           MS TIPTNL KPL  KPK  S     P+  S I+C   ++Q Q     L       +AAL
Sbjct: 1   MSFTIPTNLYKPLATKPKHLSSSSFAPR--SKIVCQQENDQQQPKKLELAKVGANAAAAL 60

Query: 61  ALSSILLS----APLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALA 120
           ALSS+LLS    AP  A+ADI+GLTPCKESKQFAKREKQ +KKLQ+SLK YA DSAPALA
Sbjct: 61  ALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALA 120

Query: 121 LKATVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVG 180
           +KAT+EKTK+RF  YG  GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVG
Sbjct: 121 IKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVG 180

Query: 181 RSYLIAIRDDKKPTQKEIIIDVPLATEI 200
           RSYLIAIRD+KKPTQKEIIIDVPLA+ +
Sbjct: 181 RSYLIAIRDEKKPTQKEIIIDVPLASSL 206

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BLAST of ClCG01G009000 vs. Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-66
Identity = 131/195 (67.18%), Postives = 149/195 (76.41%), Query Frame = 1


Query: 15  KPKLSSPFPLKPKPSSSILCSATHNQDQNP------SSSLQAFSAALALSSILLSA---- 74
           KP+LS     +P    S+ CSA+   + N       S+S++ FSAALALSS+LLS+    
Sbjct: 17  KPRLS-----RPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATS 76

Query: 75  PLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTKRRFA 134
           P PA ADI+GLTPCKESK FAKREKQ +KKL SSLK YAPDSAPALA++AT++KTKRRF 
Sbjct: 77  PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFE 136

Query: 135 FYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKP 194
            YG  GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLIA+  +KKP
Sbjct: 137 NYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKP 196

Query: 195 TQKEIIIDVPLATEI 200
             +EIIIDV LA  I
Sbjct: 197 AMREIIIDVELAARI 206

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BLAST of ClCG01G009000 vs. Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 97/187 (51.87%), Postives = 123/187 (65.78%), Query Frame = 1


Query: 17  KLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSILLSAPLPAVADISGLT 76
           K SS      + +  + C A  N+  +   +  A SA  A  ++ LSAP  A+ADI+GLT
Sbjct: 11  KASSRVAPSSRRALRVACQAQKNETASKVGTALAASALAA--AVSLSAPSAAMADIAGLT 70

Query: 77  PCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTKRRFAFYGNQGLLCGAD 136
           PC ESK +AK EK+++K L+  LK Y  DSAPA+ALKAT+E+TK RFA Y   GLLCG D
Sbjct: 71  PCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGND 130

Query: 137 GLPHLI----VSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRDDKKPTQKEIIID 196
           GLPHLI    ++    H GE   P F FLY+AG+IG+VGR YLIA++ + KPT KEIIID
Sbjct: 131 GLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIID 190

Query: 197 VPLATEI 200
           VPLAT++
Sbjct: 191 VPLATKL 195

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BLAST of ClCG01G009000 vs. TrEMBL
Match: A0A0A0M3X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714680 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.5e-100
Identity = 185/199 (92.96%), Postives = 192/199 (96.48%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPK SSP  LKPKPSSSILCSA+ NQ+QN SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQNQNTSSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTK 120
           LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+SSLKNYAPDSAPALA+KAT+EKTK
Sbjct: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEKTK 120

Query: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATEI 200
           +KKPTQKEIIIDVPLAT +
Sbjct: 181 EKKPTQKEIIIDVPLATSL 199

[Close]

BLAST of ClCG01G009000 vs. TrEMBL
Match: M5WHJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010953mg PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.9e-83
Identity = 162/205 (79.02%), Postives = 178/205 (86.83%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNP-----SSSLQAFSAAL 60
           MSLTIPTNLSKP+LKPK SSP   K  P + + CSA+   +  P     +S +QAFSAAL
Sbjct: 1   MSLTIPTNLSKPMLKPKFSSPLATK-LPRTVVFCSASQTPNPTPEKISTASPMQAFSAAL 60

Query: 61  ALSSILL-SAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKA 120
           ALSSILL SAP+PAVADI+GLTPCK+SKQFAKREKQQIKKL+SSLK YAPDSAPALA+ A
Sbjct: 61  ALSSILLGSAPMPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAINA 120

Query: 121 TVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           T+EKT+RRFA YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTQRRFANYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATEI 200
           LIAIRDDKKPTQKEIIIDVPLAT +
Sbjct: 181 LIAIRDDKKPTQKEIIIDVPLATSL 204

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BLAST of ClCG01G009000 vs. TrEMBL
Match: A0A067KCM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07458 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 8.6e-83
Identity = 163/203 (80.30%), Postives = 176/203 (86.70%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHN---QDQNPSSS-LQAFSAALA 60
           MSLTIPTNLSKP+LKPKL S         S I+CSA+ N   Q+++ S S LQAFSAALA
Sbjct: 1   MSLTIPTNLSKPMLKPKLGSSLNPAKSSRSLIVCSASQNSSTQEKDSSKSPLQAFSAALA 60

Query: 61  LSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATV 120
           LSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+SSLK YAPDSAPALA++AT+
Sbjct: 61  LSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPALAIQATI 120

Query: 121 EKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLI 180
           EKTKRRF  YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 181 AIRDDKKPTQKEIIIDVPLATEI 200
           AI D+KKP  KEIIIDVPLAT +
Sbjct: 181 AISDEKKPAMKEIIIDVPLATRL 203

[Close]

BLAST of ClCG01G009000 vs. TrEMBL
Match: B9RRQ0_RICCO (Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus communis GN=RCOM_1426230 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.3e-82
Identity = 169/215 (78.60%), Postives = 183/215 (85.12%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHN---QDQNPSSS-LQAFSAALA 60
           MSLTIP+NLSKP+LKPKL S   L P+ SS I+CSA+     Q+++ S S LQAFSAALA
Sbjct: 1   MSLTIPSNLSKPMLKPKLGSS--LTPR-SSMIVCSASQTPSTQEKDSSKSPLQAFSAALA 60

Query: 61  LSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATV 120
           LSSILLSAPLPAVADISGLTPCK+SKQFAKREKQQIKKL+SSLK YAPDSAPALA+KATV
Sbjct: 61  LSSILLSAPLPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAIKATV 120

Query: 121 EKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLI 180
           EKTKRRF  YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLI
Sbjct: 121 EKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLI 180

Query: 181 AIRDDKKPTQKEIIIDVPLATEIGKVEEGLTFGGY 212
           AIR +KKP  KEIIIDVPLAT       GL F G+
Sbjct: 181 AIRGEKKPAMKEIIIDVPLAT-------GLIFRGF 205

[Close]

BLAST of ClCG01G009000 vs. TrEMBL
Match: A0A0B0NE40_GOSAR (Photosystem I reaction center subunit III, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07314 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 4.3e-82
Identity = 164/212 (77.36%), Postives = 177/212 (83.49%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPS-SSLQAFSAALALSS 60
           MSLTIPTNLSK +LKPKL +    K    S I+CS+++    + S SSLQAFSAALALSS
Sbjct: 2   MSLTIPTNLSKSILKPKLETQVIPKASSRSLIVCSSSNPSSSDKSASSLQAFSAALALSS 61

Query: 61  ILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKT 120
           ILLSAPLPAVADI+GLTPCKESKQFAKREKQQIKKL+SSLK YAPDSAPALA+KAT+EKT
Sbjct: 62  ILLSAPLPAVADIAGLTPCKESKQFAKREKQQIKKLESSLKLYAPDSAPALAIKATIEKT 121

Query: 121 KRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIR 180
           KRRF  YG  GLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSYLIAI 
Sbjct: 122 KRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAIS 181

Query: 181 DDKKPTQKEIIIDVPLATEIGKVEEGLTFGGY 212
           DDKKP  KEIIIDVPLAT       GL F G+
Sbjct: 182 DDKKPAMKEIIIDVPLAT-------GLIFRGF 206

[Close]

BLAST of ClCG01G009000 vs. TAIR10
Match: AT1G31330.1 (AT1G31330.1 photosystem I subunit F)

HSP 1 Score: 277.7 bits (709), Expect = 5.9e-75
Identity = 144/200 (72.00%), Postives = 160/200 (80.00%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLK-PKPSSSILCSATHNQDQNPSSSLQAFSAALALSS 60
           MSLTIP NL   +L P+ +       PK S+  +CS   +    P S ++AFSAA+ALSS
Sbjct: 1   MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-MKAFSAAVALSS 60

Query: 61  ILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKT 120
           ILLSAP+PAVADISGLTPCK+SKQFAKREKQQIKKL+SSLK YAP+SAPALAL A +EKT
Sbjct: 61  ILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKT 120

Query: 121 KRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIR 180
           KRRF  YG  GLLCG+DGLPHLIV+GDQRHWGEFITPG LFLYIAGWIGWVGRSYLIAI 
Sbjct: 121 KRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIS 180

Query: 181 DDKKPTQKEIIIDVPLATEI 200
            +KKP  KEIIIDVPLA+ I
Sbjct: 181 GEKKPAMKEIIIDVPLASRI 196

[Close]

BLAST of ClCG01G009000 vs. NCBI nr
Match: gi|449465832|ref|XP_004150631.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 5.0e-100
Identity = 185/199 (92.96%), Postives = 192/199 (96.48%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNPSSSLQAFSAALALSSI 60
           MSLTIPTNLSKPLLKPK SSP  LKPKPSSSILCSA+ NQ+QN SSSLQAFSAALALSSI
Sbjct: 1   MSLTIPTNLSKPLLKPKFSSPLALKPKPSSSILCSASQNQNQNTSSSLQAFSAALALSSI 60

Query: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEKTK 120
           LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+SSLKNYAPDSAPALA+KAT+EKTK
Sbjct: 61  LLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKNYAPDSAPALAIKATIEKTK 120

Query: 121 RRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180
           RRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD
Sbjct: 121 RRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAIRD 180

Query: 181 DKKPTQKEIIIDVPLATEI 200
           +KKPTQKEIIIDVPLAT +
Sbjct: 181 EKKPTQKEIIIDVPLATSL 199

[Close]

BLAST of ClCG01G009000 vs. NCBI nr
Match: gi|659118354|ref|XP_008459076.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 9.4e-99
Identity = 185/201 (92.04%), Postives = 192/201 (95.52%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSA--THNQDQNPSSSLQAFSAALALS 60
           MSLTIPTNLSKPLLKPKLSSP  LKPKPSSSILCSA    NQ QNPSSSLQAFSAALALS
Sbjct: 1   MSLTIPTNLSKPLLKPKLSSPLALKPKPSSSILCSAFPNQNQSQNPSSSLQAFSAALALS 60

Query: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKATVEK 120
           SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+S+LKNYAPDSAPALA+KAT+EK
Sbjct: 61  SILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESALKNYAPDSAPALAIKATIEK 120

Query: 121 TKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180
           TKRRFAFYG QGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI
Sbjct: 121 TKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSYLIAI 180

Query: 181 RDDKKPTQKEIIIDVPLATEI 200
           R++KKPTQKEIIIDVPLAT +
Sbjct: 181 RNEKKPTQKEIIIDVPLATSL 201

[Close]

BLAST of ClCG01G009000 vs. NCBI nr
Match: gi|1009108042|ref|XP_015882785.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 323.2 bits (827), Expect = 3.5e-85
Identity = 166/205 (80.98%), Postives = 179/205 (87.32%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKP------SSSILCSATHNQDQNPSSSLQAFSAA 60
           MSLTIPTNLSKPLLKPKL+SP   KPKP      SSS   S++  +  + +  LQAFSAA
Sbjct: 1   MSLTIPTNLSKPLLKPKLTSPSAPKPKPFLIHCSSSSSSSSSSSTEKSSDAPPLQAFSAA 60

Query: 61  LALSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKA 120
           LALSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKL+SSLK Y+PDSAPALA+KA
Sbjct: 61  LALSSILLSAPLPAVADISGLTPCKESKQFAKREKQQIKKLESSLKLYSPDSAPALAIKA 120

Query: 121 TVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           T+EKTKRRF  YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATEI 200
           LIAIR +KKPTQKEIIIDVPLAT +
Sbjct: 181 LIAIRGEKKPTQKEIIIDVPLATRL 205

[Close]

BLAST of ClCG01G009000 vs. NCBI nr
Match: gi|645238531|ref|XP_008225720.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic [Prunus mume])

HSP 1 Score: 319.3 bits (817), Expect = 5.0e-84
Identity = 164/205 (80.00%), Postives = 179/205 (87.32%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNP-----SSSLQAFSAAL 60
           MSLTIPTNLSKP+LKPKLSSP   K  P + + CSA+   +  P     +S +QAFSAAL
Sbjct: 1   MSLTIPTNLSKPMLKPKLSSPLATK-LPRTMVFCSASQTPNPTPEKISTASPMQAFSAAL 60

Query: 61  ALSSILL-SAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKA 120
           ALSSILL SAP+PAVADISGLTPCK+SKQFAKREKQQIKKL+SSLK YAPDSAPALA+ A
Sbjct: 61  ALSSILLGSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAINA 120

Query: 121 TVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           T+EKT+RRFA YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTQRRFANYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATEI 200
           LIAIRDDKKPTQKEIIIDVPLAT +
Sbjct: 181 LIAIRDDKKPTQKEIIIDVPLATSL 204

[Close]

BLAST of ClCG01G009000 vs. NCBI nr
Match: gi|694392906|ref|XP_009371913.1| (PREDICTED: photosystem I reaction center subunit III, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 316.2 bits (809), Expect = 4.2e-83
Identity = 161/205 (78.54%), Postives = 179/205 (87.32%), Query Frame = 1


Query: 1   MSLTIPTNLSKPLLKPKLSSPFPLKPKPSSSILCSATHNQDQNP-----SSSLQAFSAAL 60
           MSLTIPTNLSKP+ +PKLSSP   K  P + + CSA+ N +  P     +S +QAFS AL
Sbjct: 1   MSLTIPTNLSKPMFQPKLSSPVATK-LPRTVVFCSASQNPNPTPEKISTASPMQAFSTAL 60

Query: 61  ALSSILL-SAPLPAVADISGLTPCKESKQFAKREKQQIKKLQSSLKNYAPDSAPALALKA 120
           ALSSIL+ SAP+PAVADISGLTPCK+SKQFAKREKQQIKKL+SSLK YAPDSAPALA+KA
Sbjct: 61  ALSSILIGSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPDSAPALAIKA 120

Query: 121 TVEKTKRRFAFYGNQGLLCGADGLPHLIVSGDQRHWGEFITPGFLFLYIAGWIGWVGRSY 180
           T+EKT+RRF+ YG QGLLCG+DGLPHLIVSGDQRHWGEFITPG LFLYIAGWIGWVGRSY
Sbjct: 121 TIEKTQRRFSNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSY 180

Query: 181 LIAIRDDKKPTQKEIIIDVPLATEI 200
           LIAIRDDKKPTQKEIIIDVPLAT +
Sbjct: 181 LIAIRDDKKPTQKEIIIDVPLATSL 204

The following BLAST results are available for this feature:

BLAST of ClCG01G009000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAF_FLATR	4.2e-75	73.43	Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia G...	[more]
PSAF_ARATH	1.0e-73	72.00	Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana...	[more]
PSAF_SPIOL	2.2e-71	70.19	Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN...	[more]
PSAF_HORVU	2.1e-66	67.18	Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=P...	[more]
PSAF_CHLRE	1.1e-43	51.87	Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinha...	[more]

BLAST of ClCG01G009000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3X2_CUCSA	3.5e-100	92.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G714680 PE=4 SV=1	[more]
M5WHJ3_PRUPE	2.9e-83	79.02	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010953mg PE=4 SV=1	[more]
A0A067KCM0_JATCU	8.6e-83	80.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07458 PE=4 SV=1	[more]
B9RRQ0_RICCO	4.3e-82	78.60	Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus comm...	[more]
A0A0B0NE40_GOSAR	4.3e-82	77.36	Photosystem I reaction center subunit III, chloroplastic-like protein OS=Gossypi...	[more]

BLAST of ClCG01G009000 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31330.1	5.9e-75	72.00	photosystem I subunit F	[more]

BLAST of ClCG01G009000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465832\|ref\|XP_004150631.1\|	5.0e-100	92.96	PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis sat...	[more]
gi\|659118354\|ref\|XP_008459076.1\|	9.4e-99	92.04	PREDICTED: photosystem I reaction center subunit III, chloroplastic [Cucumis mel...	[more]
gi\|1009108042\|ref\|XP_015882785.1\|	3.5e-85	80.98	PREDICTED: photosystem I reaction center subunit III, chloroplastic [Ziziphus ju...	[more]
gi\|645238531\|ref\|XP_008225720.1\|	5.0e-84	80.00	PREDICTED: photosystem I reaction center subunit III, chloroplastic [Prunus mume...	[more]
gi\|694392906\|ref\|XP_009371913.1\|	4.2e-83	78.54	PREDICTED: photosystem I reaction center subunit III, chloroplastic-like [Pyrus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003666	PSI_PsaF

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G009000.1	ClCG01G009000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003666	Photosystem I PsaF, reaction centre subunit III	GENE3D	G3DSA:1.10.8.110		coord: 71..199 score: 1.0
IPR003666	Photosystem I PsaF, reaction centre subunit III	PFAM	PF02507	PSI_PsaF	coord: 58..199 score: 7.5
IPR003666	Photosystem I PsaF, reaction centre subunit III	unknown	SSF81536	Subunit III of photosystem I reaction centre, PsaF	coord: 71..198 score: 1.2
None	No IPR available	PANTHER	PTHR34939	FAMILY NOT NAMED	coord: 2..199 score: 2.6E
None	No IPR available	PANTHER	PTHR34939:SF1	PHOTOSYSTEM I REACTION CENTER SUBUNIT III, CHLOROPLASTIC	coord: 2..199 score: 2.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G009000	Csa1G714680	Cucumber (Chinese Long) v2	cuwcgB023
ClCG01G009000	MELO3C021788	Melon (DHL92) v3.5.1	mewcgB132
ClCG01G009000	Cla009181	Watermelon (97103) v1	wcgwmB144
ClCG01G009000	Cla97C01G009260	Watermelon (97103) v2	wcgwmbB089
ClCG01G009000	Bhi08G000781	Wax gourd	wcgwgoB240
ClCG01G009000	CSPI01G34820	Wild cucumber (PI 183967)	cpiwcgB026
ClCG01G009000	Cucsa.236610	Cucumber (Gy14) v1	cgywcgB415
ClCG01G009000	CmaCh18G005380	Cucurbita maxima (Rimu)	cmawcgB342
ClCG01G009000	CmoCh18G005160	Cucurbita moschata (Rifu)	cmowcgB340
ClCG01G009000	Lsi02G010140	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G009000	Cp4.1LG09g07060	Cucurbita pepo (Zucchini)	cpewcgB028
ClCG01G009000	CsGy1G033300	Cucumber (Gy14) v2	cgybwcgB022
ClCG01G009000	MELO3C021788.2	Melon (DHL92) v3.6.1	medwcgB128
ClCG01G009000	Carg25403	Silver-seed gourd	carwcgB0439
ClCG01G009000	CsaV3_1G046680	Cucumber (Chinese Long) v3	cucwcgB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G009000	Cucurbita maxima (Rimu)	cmawcgB186
ClCG01G009000	Cucurbita moschata (Rifu)	cmowcgB177
ClCG01G009000	Cucurbita pepo (Zucchini)	cpewcgB451
ClCG01G009000	Silver-seed gourd	carwcgB0390