CmaCh17G013370 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G013370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 8987518 .. 8988260 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGTAGGGTTGAAGTTGAACTGTGCCCTTTGAAGATTTCCCGATTTCTTTGTTTCCTTTTCTGCTCTGGAATTCGATCTATGCAGCAAATTTTCCACCCAAATTTCTCTACTTTCTATCTCCGAATTGAATTTCCGTTTCCAAAATCGATTACGAAGGGGCACAAACGGCGGAGTTGGGGATTTGAGATAGTGAGAAGACTCGGTTAGCGGATTTGGGAGTCGAATCTTTTCAACTTCTTGTGTCTCCTGCTCCTTCAGGTTTGAGCCCTAATTTTCTCGTTGAAGCTGGAAGGTATTCTTATGAATTTTCTGGTATTTGTTTCTTCTGTTGCTTCCTTTTGGTTCGGTTACTTGTTTAATCTATGTTGATTTCCTGATACGATTGAAGTATTTTTCTTCTGATCGTTGACTTCGTTTTTCCTCCTTTTTTGTTGGGGATTCTTGGATTGAGCGTGTCAGAATGTTAGACCTTTTTATCTTTACTGAAATAAGCTATTTTCGTCGTAATCTTGCTTTGGTTTGTGTCTCTTTTTCGAAGTCTACTGATGATTTGGCCATCGACAGTGGCTTTATCTTAATGTTTGAATCCAGTCGTGCTAGAATGGGTCTGTTGAAATTTGCTATATTCCAGGTATGAACAGCTCTGTTTCTTCCAGTCGTGCTACCTCTTCGAGTTGCAGTTTCATTGGATTGTCGGAACTACAAGACATATTCATAGTAGGAGGGGTTTGAGTTAG

mRNA sequence

ATGTGGGGTAGGGTTGAAGTTGAACTGTGCCCTTTGAAGATTTCCCGATTTCTTTGTTTCCTTTTCTGCTCTGGAATTCGATCTATGCAGCAAATTTTCCACCCAAATTTCTCTACTTTCTATCTCCGAATTGAATTTCCGTTTCCAAAATCGATTACGAAGGGGCACAAACGGCGGAGTTGGGGATTTGAGATAGTGAGAAGACTCGGTTTGAGCCCTAATTTTCTCGTTGAAGCTGGAAGGTATGAACAGCTCTGTTTCTTCCAGTCGTGCTACCTCTTCGAGTTGCAGTTTCATTGGATTGTCGGAACTACAAGACATATTCATAGTAGGAGGGGTTTGAGTTAG

Coding sequence (CDS)

ATGTGGGGTAGGGTTGAAGTTGAACTGTGCCCTTTGAAGATTTCCCGATTTCTTTGTTTCCTTTTCTGCTCTGGAATTCGATCTATGCAGCAAATTTTCCACCCAAATTTCTCTACTTTCTATCTCCGAATTGAATTTCCGTTTCCAAAATCGATTACGAAGGGGCACAAACGGCGGAGTTGGGGATTTGAGATAGTGAGAAGACTCGGTTTGAGCCCTAATTTTCTCGTTGAAGCTGGAAGGTATGAACAGCTCTGTTTCTTCCAGTCGTGCTACCTCTTCGAGTTGCAGTTTCATTGGATTGTCGGAACTACAAGACATATTCATAGTAGGAGGGGTTTGAGTTAG

Protein sequence

MWGRVEVELCPLKISRFLCFLFCSGIRSMQQIFHPNFSTFYLRIEFPFPKSITKGHKRRSWGFEIVRRLGLSPNFLVEAGRYEQLCFFQSCYLFELQFHWIVGTTRHIHSRRGLS
Homology
[Close]
BLAST of CmaCh17G013370 vs. TrEMBL
Match: A0A0A0K4T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374680 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-11
Identity = 41/87 (47.13%), Postives = 49/87 (56.32%), Query Frame = 1 

Query: 29  MQQIFHPNFSTFYLRIEFPFPKSITKGHKRRSWGFEIVRRLGLSPNFLVEAGRYEQLCFF 88
           M  + H NFSTFY  I FPF  S+ K  +RR WGF +VRRLG++       G     C  
Sbjct: 1   MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMN-------GSVSTSCTT 60

Query: 89  QSCYLFELQFHWIVGTTRHIHSRRGLS 116
            S   F     WI+GT+R IHSRRGLS
Sbjct: 61  SSSCSFIGLLDWIIGTSRPIHSRRGLS 80

[Close]
BLAST of CmaCh17G013370 vs. NCBI nr
Match: gi|700189492|gb|KGN44725.1| (hypothetical protein Csa_7G374680 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 41/87 (47.13%), Postives = 49/87 (56.32%), Query Frame = 1 

Query: 29  MQQIFHPNFSTFYLRIEFPFPKSITKGHKRRSWGFEIVRRLGLSPNFLVEAGRYEQLCFF 88
           M  + H NFSTFY  I FPF  S+ K  +RR WGF +VRRLG++       G     C  
Sbjct: 1   MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMN-------GSVSTSCTT 60

Query: 89  QSCYLFELQFHWIVGTTRHIHSRRGLS 116
            S   F     WI+GT+R IHSRRGLS
Sbjct: 61  SSSCSFIGLLDWIIGTSRPIHSRRGLS 80

The following BLAST results are available for this feature:
BLAST of CmaCh17G013370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G013370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4T3_CUCSA2.8e-1147.13Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374680 PE=4 SV=1[more]
BLAST of CmaCh17G013370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G013370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189492|gb|KGN44725.1|4.0e-1147.13hypothetical protein Csa_7G374680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G013370.1CmaCh17G013370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G013370Csa7G374680Cucumber (Chinese Long) v2cmacuB384
CmaCh17G013370ClCG09G007860Watermelon (Charleston Gray)cmawcgB309
CmaCh17G013370CsaV3_7G027210Cucumber (Chinese Long) v3cmacucB0457
CmaCh17G013370Carg11514Silver-seed gourdcarcmaB0020
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G013370Cucurbita maxima (Rimu)cmacmaB374
CmaCh17G013370Cucumber (Gy14) v1cgycmaB1077
CmaCh17G013370Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G013370Cucurbita moschata (Rifu)cmacmoB366
CmaCh17G013370Wild cucumber (PI 183967)cmacpiB388
CmaCh17G013370Melon (DHL92) v3.5.1cmameB322
CmaCh17G013370Watermelon (97103) v1cmawmB331
CmaCh17G013370Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G013370Cucurbita pepo (Zucchini)cmacpeB392
CmaCh17G013370Bottle gourd (USVL1VR-Ls)cmalsiB346
CmaCh17G013370Cucumber (Gy14) v2cgybcmaB920
CmaCh17G013370Melon (DHL92) v3.6.1cmamedB374
CmaCh17G013370Silver-seed gourdcarcmaB0104
CmaCh17G013370Watermelon (97103) v2cmawmbB390
CmaCh17G013370Wax gourdcmawgoB0493