CmaCh17G013370.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G013370.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 8987518 .. 8988260 (+)
Sequence length348
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGTAGGGTTGAAGTTGAACTGTGCCCTTTGAAGATTTCCCGATTTCTTTGTTTCCTTTTCTGCTCTGGAATTCGATCTATGCAGCAAATTTTCCACCCAAATTTCTCTACTTTCTATCTCCGAATTGAATTTCCGTTTCCAAAATCGATTACGAAGGGGCACAAACGGCGGAGTTGGGGATTTGAGATAGTGAGAAGACTCGGTTAGCGGATTTGGGAGTCGAATCTTTTCAACTTCTTGTGTCTCCTGCTCCTTCAGGTTTGAGCCCTAATTTTCTCGTTGAAGCTGGAAGGTATTCTTATGAATTTTCTGGTATTTGTTTCTTCTGTTGCTTCCTTTTGGTTCGGTTACTTGTTTAATCTATGTTGATTTCCTGATACGATTGAAGTATTTTTCTTCTGATCGTTGACTTCGTTTTTCCTCCTTTTTTGTTGGGGATTCTTGGATTGAGCGTGTCAGAATGTTAGACCTTTTTATCTTTACTGAAATAAGCTATTTTCGTCGTAATCTTGCTTTGGTTTGTGTCTCTTTTTCGAAGTCTACTGATGATTTGGCCATCGACAGTGGCTTTATCTTAATGTTTGAATCCAGTCGTGCTAGAATGGGTCTGTTGAAATTTGCTATATTCCAGGTATGAACAGCTCTGTTTCTTCCAGTCGTGCTACCTCTTCGAGTTGCAGTTTCATTGGATTGTCGGAACTACAAGACATATTCATAGTAGGAGGGGTTTGAGTTAG

mRNA sequence

ATGTGGGGTAGGGTTGAAGTTGAACTGTGCCCTTTGAAGATTTCCCGATTTCTTTGTTTCCTTTTCTGCTCTGGAATTCGATCTATGCAGCAAATTTTCCACCCAAATTTCTCTACTTTCTATCTCCGAATTGAATTTCCGTTTCCAAAATCGATTACGAAGGGGCACAAACGGCGGAGTTGGGGATTTGAGATAGTGAGAAGACTCGGTTTGAGCCCTAATTTTCTCGTTGAAGCTGGAAGGTATGAACAGCTCTGTTTCTTCCAGTCGTGCTACCTCTTCGAGTTGCAGTTTCATTGGATTGTCGGAACTACAAGACATATTCATAGTAGGAGGGGTTTGAGTTAG

Coding sequence (CDS)

ATGTGGGGTAGGGTTGAAGTTGAACTGTGCCCTTTGAAGATTTCCCGATTTCTTTGTTTCCTTTTCTGCTCTGGAATTCGATCTATGCAGCAAATTTTCCACCCAAATTTCTCTACTTTCTATCTCCGAATTGAATTTCCGTTTCCAAAATCGATTACGAAGGGGCACAAACGGCGGAGTTGGGGATTTGAGATAGTGAGAAGACTCGGTTTGAGCCCTAATTTTCTCGTTGAAGCTGGAAGGTATGAACAGCTCTGTTTCTTCCAGTCGTGCTACCTCTTCGAGTTGCAGTTTCATTGGATTGTCGGAACTACAAGACATATTCATAGTAGGAGGGGTTTGAGTTAG

Protein sequence

MWGRVEVELCPLKISRFLCFLFCSGIRSMQQIFHPNFSTFYLRIEFPFPKSITKGHKRRSWGFEIVRRLGLSPNFLVEAGRYEQLCFFQSCYLFELQFHWIVGTTRHIHSRRGLS
Homology
[Close]
BLAST of CmaCh17G013370.1 vs. TrEMBL
Match: A0A0A0K4T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374680 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-11
Identity = 41/87 (47.13%), Postives = 49/87 (56.32%), Query Frame = 1 

Query: 29  MQQIFHPNFSTFYLRIEFPFPKSITKGHKRRSWGFEIVRRLGLSPNFLVEAGRYEQLCFF 88
           M  + H NFSTFY  I FPF  S+ K  +RR WGF +VRRLG++       G     C  
Sbjct: 1   MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMN-------GSVSTSCTT 60

Query: 89  QSCYLFELQFHWIVGTTRHIHSRRGLS 116
            S   F     WI+GT+R IHSRRGLS
Sbjct: 61  SSSCSFIGLLDWIIGTSRPIHSRRGLS 80

[Close]
BLAST of CmaCh17G013370.1 vs. NCBI nr
Match: gi|700189492|gb|KGN44725.1| (hypothetical protein Csa_7G374680 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 41/87 (47.13%), Postives = 49/87 (56.32%), Query Frame = 1 

Query: 29  MQQIFHPNFSTFYLRIEFPFPKSITKGHKRRSWGFEIVRRLGLSPNFLVEAGRYEQLCFF 88
           M  + H NFSTFY  I FPF  S+ K  +RR WGF +VRRLG++       G     C  
Sbjct: 1   MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMN-------GSVSTSCTT 60

Query: 89  QSCYLFELQFHWIVGTTRHIHSRRGLS 116
            S   F     WI+GT+R IHSRRGLS
Sbjct: 61  SSSCSFIGLLDWIIGTSRPIHSRRGLS 80

The following BLAST results are available for this feature:
BLAST of CmaCh17G013370.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G013370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4T3_CUCSA2.8e-1147.13Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374680 PE=4 SV=1[more]
BLAST of CmaCh17G013370.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh17G013370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189492|gb|KGN44725.1|4.0e-1147.13hypothetical protein Csa_7G374680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh17G013370CmaCh17G013370gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh17G013370.1CmaCh17G013370.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh17G013370.1.exon.3CmaCh17G013370.1.exon.3exon
CmaCh17G013370.1.exon.2CmaCh17G013370.1.exon.2exon
CmaCh17G013370.1.exon.1CmaCh17G013370.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh17G013370.1.CDS.1CmaCh17G013370.1.CDS.1CDS
CmaCh17G013370.1.CDS.2CmaCh17G013370.1.CDS.2CDS
CmaCh17G013370.1.CDS.3CmaCh17G013370.1.CDS.3CDS