CsaV3_7G027210 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G027210
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 16819202 .. 16819876 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCACGTTTCCCACCAAAATTTCTCTACTTTCTATCACCCAATTGGATTTCCGTTTCTAAATTCGGTTCCCAAGAGGCTCAGACGACGGATTTGGGGATTCCACTTAGTCAGAAGACTCGGTTAGCACTTTTTTCAGTTTGAACCCTAATTTTCTTGTTGAAACTGGAAGGTATTTTTGTTTTTCTTTTTATGGATTTTCTGAGATTTGTTTCTTCTGCTGGCTTCCTTTGTTTAATCTATGATTAAAAGTTTTTTTTTTTTTTTCCTTTTGTTTCTTCTGATCGTTGACTATTTCTTTTTTGGTGGGGATTCTTGGAATTGAATGTTGGAATGATAAACTCTTTTTACCTTTACTCAAATAGGCTGTATTTTTTGTAATATTGTTGTTGTGATATCTGACCCACGACAGTGGCTTTATCTTAATGTTTGAATCTGTGTTCGAACCAAACTGTTTGGACTTATTTACCGTACAAGAGGAATACCCAGTTTAATATAGAAGAAAAAGAAACAATTTCTCACTTGTCTCTAAGTTATTGCCTGCTATATTCTAGGTATGAACGGGTCTGTTTCCACCAGTTGTACTACCTCTTCAAGTTGCAGTTTCATTGGATTGTTGGATTGGATTATTGGAACTTCAAGACCTATTCATAGTAGGAGGGGTTTGAGTTGA

mRNA sequence

ATGCTGCACGTTTCCCACCAAAATTTCTCTACTTTCTATCACCCAATTGGATTTCCGTTTCTAAATTCGGTTCCCAAGAGGCTCAGACGACGGATTTGGGGATTCCACTTAGTCAGAAGACTCGGTATGAACGGGTCTGTTTCCACCAGTTGTACTACCTCTTCAAGTTGCAGTTTCATTGGATTGTTGGATTGGATTATTGGAACTTCAAGACCTATTCATAGTAGGAGGGGTTTGAGTTGA

Coding sequence (CDS)

ATGCTGCACGTTTCCCACCAAAATTTCTCTACTTTCTATCACCCAATTGGATTTCCGTTTCTAAATTCGGTTCCCAAGAGGCTCAGACGACGGATTTGGGGATTCCACTTAGTCAGAAGACTCGGTATGAACGGGTCTGTTTCCACCAGTTGTACTACCTCTTCAAGTTGCAGTTTCATTGGATTGTTGGATTGGATTATTGGAACTTCAAGACCTATTCATAGTAGGAGGGGTTTGAGTTGA

Protein sequence

MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMNGSVSTSCTTSSSCSFIGLLDWIIGTSRPIHSRRGLS
Homology
[Close]
BLAST of CsaV3_7G027210 vs. NCBI nr
Match: KGN44725.1 (hypothetical protein Csa_7G374680 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 9.6e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMNGSVSTSCTTSSSCSFI 60
          MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMNGSVSTSCTTSSSCSFI
Sbjct: 1  MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMNGSVSTSCTTSSSCSFI 60

Query: 61 GLLDWIIGTSRPIHSRRGLS 81
          GLLDWIIGTSRPIHSRRGLS
Sbjct: 61 GLLDWIIGTSRPIHSRRGLS 80

[Close]
BLAST of CsaV3_7G027210 vs. TrEMBL
Match: tr|A0A0A0K4T3|A0A0A0K4T3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374680 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.4e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMNGSVSTSCTTSSSCSFI 60
          MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMNGSVSTSCTTSSSCSFI
Sbjct: 1  MLHVSHQNFSTFYHPIGFPFLNSVPKRLRRRIWGFHLVRRLGMNGSVSTSCTTSSSCSFI 60

Query: 61 GLLDWIIGTSRPIHSRRGLS 81
          GLLDWIIGTSRPIHSRRGLS
Sbjct: 61 GLLDWIIGTSRPIHSRRGLS 80

The following BLAST results are available for this feature:
BLAST of CsaV3_7G027210 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44725.19.6e-40100.00hypothetical protein Csa_7G374680 [Cucumis sativus][more]
BLAST of CsaV3_7G027210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G027210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G027210 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K4T3|A0A0A0K4T3_CUCSA6.4e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374680 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G027210.1CsaV3_7G027210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G027210CmaCh17G013370Cucurbita maxima (Rimu)cmacucB0457
CsaV3_7G027210Carg11514Silver-seed gourdcarcucB0013
CsaV3_7G027210ClCG09G007860Watermelon (Charleston Gray)cucwcgB547
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G027210Silver-seed gourdcarcucB0102
CsaV3_7G027210Cucumber (Gy14) v2cgybcucB347
CsaV3_7G027210Cucumber (Gy14) v1cgycucB590
CsaV3_7G027210Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G027210Cucurbita moschata (Rifu)cmocucB0450
CsaV3_7G027210Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G027210Cucurbita pepo (Zucchini)cpecucB0182
CsaV3_7G027210Cucurbita pepo (Zucchini)cpecucB0423
CsaV3_7G027210Wild cucumber (PI 183967)cpicucB414
CsaV3_7G027210Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G027210Melon (DHL92) v3.5.1cucmeB538
CsaV3_7G027210Melon (DHL92) v3.5.1cucmeB558
CsaV3_7G027210Melon (DHL92) v3.6.1cucmedB526
CsaV3_7G027210Melon (DHL92) v3.6.1cucmedB545
CsaV3_7G027210Watermelon (97103) v1cucwmB592
CsaV3_7G027210Watermelon (97103) v2cucwmbB593
CsaV3_7G027210Wax gourdcucwgoB731