CmaCh17G011390 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G011390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 7936878 .. 7937264 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

mRNA sequence

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

Coding sequence (CDS)

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

Protein sequence

MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRLFWETCLAS

Homology

[Close]

BLAST of CmaCh17G011390 vs. TrEMBL
Match: A0A0A0K519_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390190 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 1


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60

Query: 61  CTDDTP--AMCN-------EFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSA- 120
           CTDDT    +CN       E    ENDDDD D++EE +E VESK IGF  +S+ASIDS  
Sbjct: 61  CTDDTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTK 120

Query: 121 EEFKMLNEVDKNRLFWETCLAS 129
           +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DEFKMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of CmaCh17G011390 vs. TrEMBL
Match: W9SBN2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020441 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 1


Query: 18  HIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESC----TDDTPAMCNEFKTYE- 77
           ++ D SS  LFEATGDSE+ S          ++ +DAESC    TD  P+  +   + + 
Sbjct: 11  NVVDVSSFFLFEATGDSESCSKTNPDERVSDLDDDDAESCSWDSTDRCPSNGDSMDSVDA 70

Query: 78  -----NDDDDDDDDEENDEEVESKPI--------GFMTESSASIDS-AEEFKMLNEVDKN 129
                ++DD+DD+ + ++EE  S P+        G   +S+ S+DS  + F+ LNE++KN
Sbjct: 71  IDRNCSNDDEDDECDRDEEEEGSDPVQRRTWSGSGERRKSNVSVDSTTKSFESLNEMEKN 130

[Close]

BLAST of CmaCh17G011390 vs. TrEMBL
Match: A0A0L9U9V5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g290000 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-07
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 23  SSHLLFEATGDSEAD---SLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDD 82
           S+++L EATGDSE D   ++  HG   +  E +DA+SC  DT   CNEF   ++D DD D
Sbjct: 9   SNYMLLEATGDSETDCNPTMEEHGCE-IGREDDDAQSCIHDTSETCNEFWNNDHDADDVD 68

Query: 83  DDEENDEEVESKPIGFMTESSAS---------IDSAEEFKMLNEVDKNRLFWETCLAS 129
           DD+ ++++ E     +  +             +      ++L+E++KNR FWE CLAS
Sbjct: 69  DDDGDEKKCEVHGTSYCDDDDDDQMQEHQKFCVSDESGHEVLDEMEKNRRFWEACLAS 125

[Close]

BLAST of CmaCh17G011390 vs. TrEMBL
Match: A0A0S3S0K1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G400400 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-07
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 23  SSHLLFEATGDSEAD---SLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDD 82
           S+++L EATGDSE D   ++  HG   +  E +DA+SC  DT   CNEF   ++D DD D
Sbjct: 9   SNYMLLEATGDSETDCNPTMEEHGCE-IGREDDDAQSCIHDTSETCNEFWNNDHDADDVD 68

Query: 83  DDEENDEEVESKPIGFMTESSAS---------IDSAEEFKMLNEVDKNRLFWETCLAS 129
           DD+ ++++ E     +  +             +      ++L+E++KNR FWE CLAS
Sbjct: 69  DDDGDEKKCEVHGTSYCDDDDDDQMQEHQKFCVSDESGHEVLDEMEKNRRFWEACLAS 125

[Close]

BLAST of CmaCh17G011390 vs. TrEMBL
Match: A0A0D2RZ69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G140100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 52/145 (35.86%), Postives = 73/145 (50.34%), Query Frame = 1


Query: 21  DFSSHLLFEATGDSEADSL-------VGHGSSTVSVEFNDAESCTDDTP----------- 80
           D SS LLFEATGDSE+          + H       +  DAESC+ DT            
Sbjct: 12  DVSSFLLFEATGDSESGCSSDPAMVDISHDDDGDDDDDGDAESCSCDTAPDVVHGVREIG 71

Query: 81  -AMCNEFKTYEN--DDDDDDDDEE----------------NDEEVESKPIGFMTESSASI 129
            ++ N+F       DD+DDDDD++                +DE +E   +G   +SS+S 
Sbjct: 72  GSLKNKFANVVEGVDDEDDDDDDDGVVEQKEVQLYKKGCRDDERIEGVGVGKEKKSSSSA 131

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: gi|778727786|ref|XP_011659319.1| (PREDICTED: nucleophosmin [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33
Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 1


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60

Query: 61  CTDDTP--AMCN-------EFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSA- 120
           CTDDT    +CN       E    ENDDDD D++EE +E VESK IGF  +S+ASIDS  
Sbjct: 61  CTDDTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTK 120

Query: 121 EEFKMLNEVDKNRLFWETCLAS 129
           +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DEFKMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: gi|659101093|ref|XP_008451422.1| (PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 96/150 (64.00%), Postives = 106/150 (70.67%), Query Frame = 1


Query: 1   MLST-PFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVG--HGSSTVSVEFND 60
           MLST P FFNF+PH F    GNHIED SS+ LFEATGDSEADS V     SS  + EFND
Sbjct: 1   MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSSASTTEFND 60

Query: 61  AESCTDDTPAM-CNEF------------KTYENDDDD-DDDDEENDEEVESKPIGFMTES 120
           AESCTDDTP M CN              +  ENDDDD DD+DEE +E VESK IGF  +S
Sbjct: 61  AESCTDDTPTMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKS 120

Query: 121 SASIDSA-EEFKMLNEVDKNRLFWETCLAS 129
           +ASIDS  ++FKMLNEVDKNRLFWETCLAS
Sbjct: 121 NASIDSTKDDFKMLNEVDKNRLFWETCLAS 150

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: gi|657989121|ref|XP_008386748.1| (PREDICTED: uncharacterized protein LOC103449241 [Malus domestica])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1


Query: 18  HIEDFSSHLLFEATGDSEADSLVGHGSSTV--SVEFNDAESCTDDT-------PAMCNEF 77
           ++ D SS +LFEATGDSEAD++       +    + +DA+SC+ D+         + N+ 
Sbjct: 29  NVMDVSSFMLFEATGDSEADAVSSDDDHPMLSMADEDDAQSCSYDSFDRNPIADDVLNDL 88

Query: 78  KTYENDDDDDDDDEENDEEVESKPI-------------------GFMTESSASIDSAEEF 129
             +  DDDD  +DEE DEE E   +                   G   +S+ S+DS +EF
Sbjct: 89  DDHGRDDDDRGNDEEEDEEEECSSVYDHHQRWRSGENVGMPLMGGHQLKSTVSVDSTKEF 148

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: gi|645258628|ref|XP_008234972.1| (PREDICTED: putative uncharacterized protein YGR160W [Prunus mume])

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-09
Identity = 51/144 (35.42%), Postives = 79/144 (54.86%), Query Frame = 1


Query: 21  DFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCT-----------------DDTPA 80
           D SS LLFEA+GDSEAD    +   ++++  +DA+SC+                 DD   
Sbjct: 26  DLSSFLLFEASGDSEADQ--NYPDPSLAMAEDDAQSCSYDSTDIPDADDDELHDIDDQGD 85

Query: 81  MCNEFKTYENDDDDDDDDEENDEEVESKP-------------------IGFMTESSASID 129
             ++  ++ +DDDD+D++EE +EE  S                     +G   +S+ S+D
Sbjct: 86  SVDQAYSHGDDDDDEDEEEEGEEEECSSVYHQRWGGGEHNNIGMPLPLMGHQLKSTVSVD 145

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: gi|764534998|ref|XP_011458655.1| (PREDICTED: uncharacterized protein LOC105349775 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-09
Identity = 51/127 (40.16%), Postives = 76/127 (59.84%), Query Frame = 1


Query: 21  DFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDDD 80
           D S  LLFE +GDSEA S V    S V +  +DAESC+ D+  + +  +    DDD+D++
Sbjct: 33  DVSPFLLFEDSGDSEAASEV---VSDVLMAEDDAESCSWDSADVSSADELIVIDDDEDEE 92

Query: 81  DE-----------ENDEEVESKPI--------GFMTESSASIDSAEEFKMLNEVDKNRLF 129
           D+           +++EE E + +        G   +S+ S+DS +EF+MLNEV+K++LF
Sbjct: 93  DDRGVREYRSYSDDHEEEGEEEEVMSSDYQRWGHQLKSTVSVDSTKEFEMLNEVEKSKLF 152

The following BLAST results are available for this feature:

BLAST of CmaCh17G011390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G011390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K519_CUCSA	2.2e-33	64.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390190 PE=4 SV=1	[more]
W9SBN2_9ROSA	1.4e-08	38.46	Uncharacterized protein OS=Morus notabilis GN=L484_020441 PE=4 SV=1	[more]
A0A0L9U9V5_PHAAN	7.9e-07	35.59	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g290000 PE=4 SV=1	[more]
A0A0S3S0K1_PHAAN	7.9e-07	35.59	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G400400 PE=...	[more]
A0A0D2RZ69_GOSRA	1.8e-06	35.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G140100 PE=4 SV=1	[more]

BLAST of CmaCh17G011390 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G011390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727786\|ref\|XP_011659319.1\|	3.2e-33	64.79	PREDICTED: nucleophosmin [Cucumis sativus]	[more]
gi\|659101093\|ref\|XP_008451422.1\|	5.4e-33	64.00	PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 [Cucumis ...	[more]
gi\|657989121\|ref\|XP_008386748.1\|	4.5e-11	38.13	PREDICTED: uncharacterized protein LOC103449241 [Malus domestica]	[more]
gi\|645258628\|ref\|XP_008234972.1\|	4.2e-09	35.42	PREDICTED: putative uncharacterized protein YGR160W [Prunus mume]	[more]
gi\|764534998\|ref\|XP_011458655.1\|	7.1e-09	40.16	PREDICTED: uncharacterized protein LOC105349775 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G011390.1	CmaCh17G011390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35726	FAMILY NOT NAMED	coord: 13..128 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G011390	Cla014715	Watermelon (97103) v1	cmawmB328
CmaCh17G011390	Csa7G390190	Cucumber (Chinese Long) v2	cmacuB385
CmaCh17G011390	MELO3C015888	Melon (DHL92) v3.5.1	cmameB327
CmaCh17G011390	ClCG09G006580	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G011390	CSPI07G16580	Wild cucumber (PI 183967)	cmacpiB389
CmaCh17G011390	CmoCh08G003750	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G011390	CmoCh17G011110	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G011390	Lsi02G023390	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G011390	Cp4.1LG17g06740	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G011390	Cp4.1LG12g11950	Cucurbita pepo (Zucchini)	cmacpeB372
CmaCh17G011390	MELO3C015888.2	Melon (DHL92) v3.6.1	cmamedB380
CmaCh17G011390	CsaV3_7G028330	Cucumber (Chinese Long) v3	cmacucB0458
CmaCh17G011390	Cla97C09G169180	Watermelon (97103) v2	cmawmbB386
CmaCh17G011390	Bhi09G000811	Wax gourd	cmawgoB0489
CmaCh17G011390	Carg07213	Silver-seed gourd	carcmaB0142
CmaCh17G011390	Carg22173	Silver-seed gourd	carcmaB1191

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G011390	CmaCh08G003800	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G011390	Cucumber (Gy14) v1	cgycmaB0156
CmaCh17G011390	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G011390	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G011390	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G011390	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G011390	Cucumber (Gy14) v2	cgybcmaB921
CmaCh17G011390	Cucumber (Chinese Long) v3	cmacucB0462