Csa7G390190 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G390190
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 14651757 .. 14652212 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTATTCTTTTTTTCATTTTGATCATTATGCTCTCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAACCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGTCGACCTTCAGAGCTCGTCTCCCGTCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGTTATGTAATAATGAAGATGATGAAGATGAAGAAGAGATGGGTGTTGAGAATGATGATGATGATGGGGATGAAGAAGAAGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAGGGTTTT

mRNA sequence

ATGCTCTCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAACCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGTCGACCTTCAGAGCTCGTCTCCCGTCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGTTATGTAATAATGAAGATGATGAAGATGAAGAAGAGATGGGTGTTGAGAATGATGATGATGATGGGGATGAAGAAGAAGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG

Coding sequence (CDS)

ATGCTCTCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAACCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGTCGACCTTCAGAGCTCGTCTCCCGTCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGTTATGTAATAATGAAGATGATGAAGATGAAGAAGAGATGGGTGTTGAGAATGATGATGATGATGGGGATGAAGAAGAAGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG

Protein sequence

MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTDDTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEFKMLNEVDKNRLFWETCLAS*

Homology

[Close]

BLAST of Csa7G390190 vs. TrEMBL
Match: A0A0A0K519_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390190 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 5.7e-75
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60
           MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60

Query: 61  DTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEF 120
           DTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEF
Sbjct: 61  DTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEF 120

Query: 121 KMLNEVDKNRLFWETCLAS 140
           KMLNEVDKNRLFWETCLAS
Sbjct: 121 KMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of Csa7G390190 vs. NCBI nr
Match: gi|778727786|ref|XP_011659319.1| (PREDICTED: nucleophosmin [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 8.2e-75
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60
           MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60

Query: 61  DTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEF 120
           DTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEF
Sbjct: 61  DTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEF 120

Query: 121 KMLNEVDKNRLFWETCLAS 140
           KMLNEVDKNRLFWETCLAS
Sbjct: 121 KMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of Csa7G390190 vs. NCBI nr
Match: gi|659101093|ref|XP_008451422.1| (PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 4.5e-57
Identity = 120/148 (81.08%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 3   SSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE----VDLQSSSPVST-EFNDAES 62
           +SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE    VDL+SSS  ST EFNDAES
Sbjct: 4   TSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSSASTTEFNDAES 63

Query: 63  CTDDTDRIMLCNNEDDEDEEEMG-----VENDDDD-GDEEEEEEEVVESKAIGFSIKSNA 122
           CTDDT   MLCNNE+++D+++ G     VENDDDD  DE+EEEEEVVESKAIGFSIKSNA
Sbjct: 64  CTDDTPT-MLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKSNA 123

Query: 123 SIDSTKDEFKMLNEVDKNRLFWETCLAS 140
           SIDSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 124 SIDSTKDDFKMLNEVDKNRLFWETCLAS 150

The following BLAST results are available for this feature:

BLAST of Csa7G390190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K519_CUCSA	5.7e-75	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390190 PE=4 SV=1	[more]

BLAST of Csa7G390190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727786\|ref\|XP_011659319.1\|	8.2e-75	100.00	PREDICTED: nucleophosmin [Cucumis sativus]	[more]
gi\|659101093\|ref\|XP_008451422.1\|	4.5e-57	81.08	PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 [Cucumis ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G390190.1	Csa7G390190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 138..139 scor
None	No IPR available	PANTHER	PTHR35726	FAMILY NOT NAMED	coord: 17..139 score: 2.8
None	No IPR available	PANTHER	PTHR35726:SF1	SUBFAMILY NOT NAMED	coord: 17..139 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G390190	Cla014715	Watermelon (97103) v1	cuwmB553
Csa7G390190	MELO3C015888	Melon (DHL92) v3.5.1	cumeB535
Csa7G390190	ClCG09G006580	Watermelon (Charleston Gray)	cuwcgB517
Csa7G390190	Lsi02G023390	Bottle gourd (USVL1VR-Ls)	culsiB509
Csa7G390190	MELO3C015888.2	Melon (DHL92) v3.6.1	cumedB514
Csa7G390190	Cla97C09G169180	Watermelon (97103) v2	cuwmbB560
Csa7G390190	Bhi09G000811	Wax gourd	cuwgoB693
Csa7G390190	CSPI07G16580	Wild cucumber (PI 183967)	cpicuB354
Csa7G390190	CmaCh17G011390	Cucurbita maxima (Rimu)	cmacuB385
Csa7G390190	CmaCh08G003800	Cucurbita maxima (Rimu)	cmacuB920
Csa7G390190	CmoCh17G011110	Cucurbita moschata (Rifu)	cmocuB375
Csa7G390190	CmoCh08G003750	Cucurbita moschata (Rifu)	cmocuB907
Csa7G390190	Cp4.1LG17g06740	Cucurbita pepo (Zucchini)	cpecuB339
Csa7G390190	Carg07213	Silver-seed gourd	carcuB0117
Csa7G390190	Carg22173	Silver-seed gourd	carcuB0875

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G390190	Cucurbita pepo (Zucchini)	cpecuB158
Csa7G390190	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G390190	Cucurbita pepo (Zucchini)	cpecuB344
Csa7G390190	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G390190	Cucumber (Gy14) v2	cgybcuB323
Csa7G390190	Cucumber (Gy14) v1	cgycuB085
Csa7G390190	Cucurbita maxima (Rimu)	cmacuB388
Csa7G390190	Cucurbita maxima (Rimu)	cmacuB914
Csa7G390190	Cucurbita moschata (Rifu)	cmocuB378
Csa7G390190	Cucurbita moschata (Rifu)	cmocuB900
Csa7G390190	Melon (DHL92) v3.5.1	cumeB522