Carg07213 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07213
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	glutamic acid-rich protein
Location	Cucurbita_argyrosperma_scaffold_017 : 686544 .. 686927 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCAACTCCTTTCTTCTTCAACTTCCATCCTCACCAATTTGGCAACCACATTGAGGATTTTTCATCTCATTTGCTCTTCGAGGCGACGGGCGACTCCGAGGCCGACTCCTTGGTCGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTCAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGCGTAACAAGGTCCAGACGTATGAAAACGATGACGATGACGATGACGATGACGAGAATGAGGAGGAGGTGGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGAGAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCGTAA

mRNA sequence

ATGCTCTCAACTCCTTTCTTCTTCAACTTCCATCCTCACCAATTTGGCAACCACATTGAGGATTTTTCATCTCATTTGCTCTTCGAGGCGACGGGCGACTCCGAGGCCGACTCCTTGGTCGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTCAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGCGTAACAAGGTCCAGACGTATGAAAACGATGACGATGACGATGACGATGACGAGAATGAGGAGGAGGTGGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGAGAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCGTAA

Coding sequence (CDS)

ATGCTCTCAACTCCTTTCTTCTTCAACTTCCATCCTCACCAATTTGGCAACCACATTGAGGATTTTTCATCTCATTTGCTCTTCGAGGCGACGGGCGACTCCGAGGCCGACTCCTTGGTCGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTCAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGCGTAACAAGGTCCAGACGTATGAAAACGATGACGATGACGATGACGATGACGAGAATGAGGAGGAGGTGGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGAGAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCGTAA

Protein sequence

MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMRNKVQTYENDDDDDDDDENEEEVESKPIGFMTESSASIDSAEEFKMLNEVEKNRLFWETCLAS

Homology

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BLAST of Carg07213 vs. NCBI nr
Match: XP_023522205.1 (uncharacterized protein LOC111786091 [Cucurbita pepo subsp. pepo] >XP_023548487.1 uncharacterized protein LOC111807136 [Cucurbita pepo subsp. pepo] >XP_023549405.1 uncharacterized protein LOC111807769 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 2.2e-51
Identity = 115/127 (90.55%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD
Sbjct: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60

Query: 61  TPAMRNKVQTYEXXXXXXXXXXXXXXXXSKPIGFMTESSASIDSAEEFKMLNEVEKNRLF 120
           TPAMRN+VQ YE      XXXXXXX   SKPIGFMTESS SIDSAEEFKMLNEVEKNRLF
Sbjct: 61  TPAMRNEVQMYE----NDXXXXXXXEVESKPIGFMTESSGSIDSAEEFKMLNEVEKNRLF 120

Query: 121 WETCLAS 128
           WETCLAS
Sbjct: 121 WETCLAS 123

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BLAST of Carg07213 vs. NCBI nr
Match: XP_022953969.1 (uncharacterized protein LOC111456367 [Cucurbita moschata])

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQ+G HIEDFSS LLFEATGDSEADSLVGHGSSTVSVEFNDAESCTD+
Sbjct: 1   MLSTPFFFNFHPHQYGTHIEDFSSQLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDE 60

Query: 61  TPAMRNKVQTYEXXXXXXXXXXXXXXXXSKPIGFMTESSASIDSAEEFKMLNEVEKNRLF 120
           TPAMRNKVQTYE  XXXXXXXXXXXXXXSKPIGFMTESSASIDSAEEFKMLNEVEKNRLF
Sbjct: 61  TPAMRNKVQTYE--XXXXXXXXXXXXXXSKPIGFMTESSASIDSAEEFKMLNEVEKNRLF 120

Query: 121 WETCLAS 128
           WETCLAS
Sbjct: 121 WETCLAS 125

[Close]

BLAST of Carg07213 vs. NCBI nr
Match: XP_022991734.1 (uncharacterized protein LOC111488264 [Cucurbita maxima])

HSP 1 Score: 206.8 bits (525), Expect = 4.2e-50
Identity = 121/128 (94.53%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD
Sbjct: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60

Query: 61  TPAMRNKVQTYE-XXXXXXXXXXXXXXXXSKPIGFMTESSASIDSAEEFKMLNEVEKNRL 120
           TPAM N+ +TYE XXXXXXXXXXXXXXX SKPIGFMTESSASIDSAEEFKMLNEV+KNRL
Sbjct: 61  TPAMCNEFKTYEXXXXXXXXXXXXXXXXESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120

Query: 121 FWETCLAS 128
           FWETCLAS
Sbjct: 121 FWETCLAS 128

[Close]

BLAST of Carg07213 vs. NCBI nr
Match: XP_023513847.1 (uncharacterized protein LOC111778329 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 83/132 (62.88%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 8   FNFHPHQFG-NHIEDFSSHLLFEATGDSEADSLVGHGSSTVS----VEFNDAESCTDDTP 67
           FNFHPH F  +H++DFSS+LLFEA+GDSE DSL   G ST +    VEFNDAESCTDDTP
Sbjct: 3   FNFHPHYFARDHVDDFSSYLLFEASGDSEVDSLADLGGSTTTTLNLVEFNDAESCTDDTP 62

Query: 68  AMRNKVQTYE-------XXXXXXXXXXXXXXXXSKPIGFMTESSASIDSAEEFKMLNEVE 127
            + +++  YE       XXXXXXX         SK IGF T SSASIDS +EFKMLN+VE
Sbjct: 63  DLYDELVRYEXXXXXXXXXXXXXXTFENDGVVESKAIGFTTSSSASIDSTKEFKMLNDVE 122

[Close]

BLAST of Carg07213 vs. NCBI nr
Match: XP_011659319.1 (PREDICTED: nucleophosmin [Cucumis sativus] >KGN44840.1 hypothetical protein Csa_7G390190 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 4.7e-25
Identity = 92/142 (64.79%), Postives = 100/142 (70.42%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60

Query: 61  CTDDTPAM----------RNKVQTYEXXXXXXXXXXXXXXXXSKPIGFMTESSASIDSA- 120
           CTDDT  +                  XXXXXXXXXXXXXXXXSK IGF  +S+ASIDS  
Sbjct: 61  CTDDTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTK 120

Query: 121 EEFKMLNEVEKNRLFWETCLAS 128
           +EFKMLNEV+KNRLFWETCLAS
Sbjct: 121 DEFKMLNEVDKNRLFWETCLAS 139

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BLAST of Carg07213 vs. TrEMBL
Match: tr|A0A0A0K519|A0A0A0K519_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 92/142 (64.79%), Postives = 100/142 (70.42%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60

Query: 61  CTDDTPAM----------RNKVQTYEXXXXXXXXXXXXXXXXSKPIGFMTESSASIDSA- 120
           CTDDT  +                  XXXXXXXXXXXXXXXXSK IGF  +S+ASIDS  
Sbjct: 61  CTDDTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTK 120

Query: 121 EEFKMLNEVEKNRLFWETCLAS 128
           +EFKMLNEV+KNRLFWETCLAS
Sbjct: 121 DEFKMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of Carg07213 vs. TrEMBL
Match: tr|A0A1S3BRI2|A0A1S3BRI2_CUCME (glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 89/150 (59.33%), Postives = 96/150 (64.00%), Query Frame = 0


Query: 1   MLST-PFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSS--TVSVEFND 60
           MLST P FFNF+PH F    GNHIED SS+ LFEATGDSEADS V   SS      EFND
Sbjct: 1   MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSXXXXXXEFND 60

Query: 61  AESCT---------------DDTPAMRNKVQTYEXXXXXXXXXXXXXXXXSKPIGFMTES 120
           AESCT                             XXXXXXXXXXXXXXX SK IGF  +S
Sbjct: 61  AESCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKAIGFSIKS 120

Query: 121 SASIDSA-EEFKMLNEVEKNRLFWETCLAS 128
           +ASIDS  ++FKMLNEV+KNRLFWETCLAS
Sbjct: 121 NASIDSTKDDFKMLNEVDKNRLFWETCLAS 150

[Close]

BLAST of Carg07213 vs. TrEMBL
Match: tr|A0A2P6PWD0|A0A2P6PWD0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0292431 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 21  DFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMRNK------------- 80
           D S  LLFE +GDSEA + V      V +  +DAESC+ D+  + +              
Sbjct: 28  DVSPFLLFEDSGDSEAAAEV---VFDVPLAEDDAESCSYDSADISSADELIVNGEDDXXX 87

Query: 81  --VQTYEXXXXXXXXXXXXXXXXS---KPIGFMTESSASIDSAEEFKMLNEVEKNRLFWE 128
             V+ Y XXXXXXXXXXXXXXXX    +  G   +S+ S+DS +EF+MLNEVEK++LFWE
Sbjct: 88  XGVREYRXXXXXXXXXXXXXXXXXSVYQRCGHQLKSTVSVDSTKEFEMLNEVEKSKLFWE 147

[Close]

BLAST of Carg07213 vs. TrEMBL
Match: tr|A0A251N353|A0A251N353_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G251300 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 58/143 (40.56%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 21  DFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMRN-------------- 80
           D SS LLFEA+GDSEAD    +   ++++  +DA+SC+ D+  + N              
Sbjct: 2   DVSSFLLFEASGDSEADQ--NYPDPSLAMAEDDAQSCSYDSTDIPNVDDDELHDIDDQGD 61

Query: 81  -KVQTYEXXXXXXXXXXXXXXXXSKP---------------------IGFMTESSASIDS 128
              Q Y   XXXXXXXXXXXXXX                        +G   +S+ S+DS
Sbjct: 62  SVDQAYSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIGMPLPLMGHQLKSTVSVDS 121

[Close]

BLAST of Carg07213 vs. TrEMBL
Match: tr|W9SBN2|W9SBN2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020441 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 60/130 (46.15%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 18  HIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESC----TDDTPA-------MRN 77
           ++ D SS  LFEATGDSE+ S          ++ +DAESC    TD  P+          
Sbjct: 11  NVVDVSSFFLFEATGDSESCSKTNPDERVSDLDDDDAESCSWDSTDRCPSNGXXXXXXXX 70

Query: 78  KVQTYEXXXXXXXXXXXXXXXXSKPI--------GFMTESSASIDS-AEEFKMLNEVEKN 128
                 XXXXXXXXXXXXXXXX  P+        G   +S+ S+DS  + F+ LNE+EKN
Sbjct: 71  XXXXXXXXXXXXXXXXXXXXXXXDPVQRRTWSGSGERRKSNVSVDSTTKSFESLNEMEKN 130

The following BLAST results are available for this feature:

BLAST of Carg07213 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522205.1	2.2e-51	90.55	uncharacterized protein LOC111786091 [Cucurbita pepo subsp. pepo] >XP_023548487....	[more]
XP_022953969.1	1.5e-50	95.28	uncharacterized protein LOC111456367 [Cucurbita moschata]	[more]
XP_022991734.1	4.2e-50	94.53	uncharacterized protein LOC111488264 [Cucurbita maxima]	[more]
XP_023513847.1	1.2e-28	62.88	uncharacterized protein LOC111778329 [Cucurbita pepo subsp. pepo]	[more]
XP_011659319.1	4.7e-25	64.79	PREDICTED: nucleophosmin [Cucumis sativus] >KGN44840.1 hypothetical protein Csa_...	[more]

BLAST of Carg07213 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07213 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07213 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K519\|A0A0A0K519_CUCSA	3.1e-25	64.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1	[more]
tr\|A0A1S3BRI2\|A0A1S3BRI2_CUCME	1.8e-20	59.33	glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1	[more]
tr\|A0A2P6PWD0\|A0A2P6PWD0_ROSCH	1.6e-05	48.00	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0292431 PE=4...	[more]
tr\|A0A251N353\|A0A251N353_PRUPE	2.7e-05	40.56	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G251300 PE=4 SV=1	[more]
tr\|W9SBN2\|W9SBN2_9ROSA	1.0e-04	46.15	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020441 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07213-RA	Carg07213-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..98
None	No IPR available	PANTHER	PTHR35726	FAMILY NOT NAMED	coord: 18..127

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07213	Cla014715	Watermelon (97103) v1	carwmB0106
Carg07213	Csa7G390190	Cucumber (Chinese Long) v2	carcuB0117
Carg07213	MELO3C015888	Melon (DHL92) v3.5.1	carmeB0113
Carg07213	ClCG09G006580	Watermelon (Charleston Gray)	carwcgB0108
Carg07213	CSPI07G16580	Wild cucumber (PI 183967)	carcpiB0122
Carg07213	CmaCh08G003800	Cucurbita maxima (Rimu)	carcmaB0148
Carg07213	CmaCh17G011390	Cucurbita maxima (Rimu)	carcmaB0142
Carg07213	CmoCh08G003750	Cucurbita moschata (Rifu)	carcmoB0157
Carg07213	CmoCh17G011110	Cucurbita moschata (Rifu)	carcmoB0152
Carg07213	Lsi02G023390	Bottle gourd (USVL1VR-Ls)	carlsiB098
Carg07213	Cp4.1LG12g11950	Cucurbita pepo (Zucchini)	carcpeB0158
Carg07213	Cp4.1LG17g06740	Cucurbita pepo (Zucchini)	carcpeB0161
Carg07213	MELO3C015888.2	Melon (DHL92) v3.6.1	carmedB0115
Carg07213	CsaV3_7G028330	Cucumber (Chinese Long) v3	carcucB0126
Carg07213	Cla97C09G169180	Watermelon (97103) v2	carwmbB0117
Carg07213	Bhi09G000811	Wax gourd	carwgoB0131

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07213	Carg22173	Silver-seed gourd	carcarB135

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07213	Cucumber (Gy14) v2	carcgybB0118
Carg07213	Cucumber (Gy14) v2	carcgybB0120
Carg07213	Cucumber (Gy14) v1	carcgyB0128
Carg07213	Cucurbita maxima (Rimu)	carcmaB0145
Carg07213	Cucurbita pepo (Zucchini)	carcpeB0159
Carg07213	Cucurbita pepo (Zucchini)	carcpeB0165
Carg07213	Wild cucumber (PI 183967)	carcpiB0124
Carg07213	Cucumber (Chinese Long) v2	carcuB0119
Carg07213	Cucumber (Chinese Long) v3	carcucB0128