CsaV3_7G028330 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G028330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionglutamic acid-rich protein
Locationchr7 : 17861755 .. 17863066 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAGGGCAGCCCATGTTTTCTTTCTTAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAGAAAACTTTTTTAGTTTTTGCTTTATATAACCTCTCCCCATGCCACACCCTCCATTTGTTAATATTCTACTAAATAAATCAACACATCACCTTTTTCTTGTTTTCTTATTCTTTTTTTCATTTTGATCATTATGCTCTCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAACCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGTCGACCTTCAGAGCTCGTCTCCCGTCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGTTATGTAATAATGAAGATGATGAAGATGAAGAAGAGATGGGTGTTGAGAATGATGATGATGATGGGGATGAAGAAGAAGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAATCTCATTTCTGAAAAACTGGGAGGGTTGTGGTGAAGGAAAAATGAAGGAAACTTGTGGGATTTCTTTCTTTTTTTAAAAAAAAAATATATACTTTTGTTGGTGTTGCTGTTTGATGTTTAAAATGTACATGAAAGCAAGAGATGGATTTTTATTGATCCATTTAAGACATTTCTTTTTCTTTTCGTTTGACTTTGTGTTATTGCCTTCTTTTTCTGGGTTCATTTATGATGTTTTAAGATTTCTGAAGATGGGGTGGTAATTCTCAAGTTGGACCTACACAAAAACTATTCATTTTAAATGGGCTAAATTGTAAATCTTGTCTCTGGTTTCAAGAAGTTTAGATTTCAGTTCTTATATTAAAATTTAATATTACCAATTTACATGATGACATATGTGTAAAAGACTAAGATGACTACTTTATCTTTTAGACTTGCTATTTTATTAAGTATGTAAAAGACTAAGATGTATCTAATTTTATACTGCTAAAAAAGAGTATATAAATGAAAAATACAAAACTGTCACATGGTAATTTTTCACCGGACAACTCCTTGGACGGCATGAATTAAAGATAGGTGCAATCTAGAGAACCATTCTCTCTTTGATTTATTAAGTTTTCTTTGTGAGAAAGAAAAACACATAGTTTAGTTCTAAAAAAAAG

mRNA sequence

ATGCTCTCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAACCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGTCGACCTTCAGAGCTCGTCTCCCGTCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGTTATGTAATAATGAAGATGATGAAGATGAAGAAGAGATGGGTGTTGAGAATGATGATGATGATGGGGATGAAGAAGAAGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG

Coding sequence (CDS)

ATGCTCTCATCTCCTCTCTTCTTCAACTTCTATCCTCACCATTTTGTTCATAACCAAGGCAACCACATTGAGGATATTTCCTCTTATTTTCTCTTTGAGGCCACTGGGGACTCCGAGGTCGACCTTCAGAGCTCGTCTCCCGTCTCCACGGAGTTCAACGACGCGGAATCATGCACCGATGACACTGATCGTATTATGTTATGTAATAATGAAGATGATGAAGATGAAGAAGAGATGGGTGTTGAGAATGATGATGATGATGGGGATGAAGAAGAAGAAGAAGAAGAAGTAGTTGAAAGCAAGGCCATTGGGTTTTCAATAAAGTCAAATGCTTCTATTGATTCAACTAAGGATGAGTTCAAAATGTTGAATGAAGTTGATAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAG

Protein sequence

MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTDDTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTKDEFKMLNEVDKNRLFWETCLAS
BLAST of CsaV3_7G028330 vs. NCBI nr
Match: XP_011659319.1 (PREDICTED: nucleophosmin [Cucumis sativus] >KGN44840.1 hypothetical protein Csa_7G390190 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 6.7e-49
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60
           MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60

Query: 61  DTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTKDEF 120
           DTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTKDEF
Sbjct: 61  DTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTKDEF 120

Query: 121 KMLNEVDKNRLFWETCLAS 140
           KMLNEVDKNRLFWETCLAS
Sbjct: 121 KMLNEVDKNRLFWETCLAS 139

BLAST of CsaV3_7G028330 vs. NCBI nr
Match: XP_008451422.1 (PREDICTED: glutamic acid-rich protein [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-33
Identity = 121/147 (82.31%), Postives = 124/147 (84.35%), Query Frame = 0

Query: 3   SSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE----VDLQSS-SPVSTEFNDAES 62
           +SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE    VDL+SS      EFNDAES
Sbjct: 4   TSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSXXXXXXEFNDAES 63

Query: 63  CT-----DDTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNAS 122
           CT            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SKAIGFSIKSNAS
Sbjct: 64  CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKAIGFSIKSNAS 123

Query: 123 IDSTKDEFKMLNEVDKNRLFWETCLAS 140
           IDSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 124 IDSTKDDFKMLNEVDKNRLFWETCLAS 150

BLAST of CsaV3_7G028330 vs. NCBI nr
Match: XP_022991734.1 (uncharacterized protein LOC111488264 [Cucurbita maxima])

HSP 1 Score: 125.2 bits (313), Expect = 1.8e-25
Identity = 93/142 (65.49%), Postives = 100/142 (70.42%), Query Frame = 0

Query: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60

Query: 61  CTDDTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTK 120
           CTDDT  +                 XXXXXXXXXXXXXXXX SK IGF  +S+ASIDS  
Sbjct: 61  CTDDTPAM---------CNEFKTYEXXXXXXXXXXXXXXXXESKPIGFMTESSASIDSA- 120

Query: 121 DEFKMLNEVDKNRLFWETCLAS 140
           +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 EEFKMLNEVDKNRLFWETCLAS 128

BLAST of CsaV3_7G028330 vs. NCBI nr
Match: XP_023522205.1 (uncharacterized protein LOC111786091 [Cucurbita pepo subsp. pepo] >XP_023548487.1 uncharacterized protein LOC111807136 [Cucurbita pepo subsp. pepo] >XP_023549405.1 uncharacterized protein LOC111807769 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24
Identity = 82/142 (57.75%), Postives = 90/142 (63.38%), Query Frame = 0

Query: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60

Query: 61  CTDDTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTK 120
           CTDDT  +                        XXXXXXX   SK IGF  +S+ SIDS  
Sbjct: 61  CTDDTPAM--------------RNEVQMYENDXXXXXXXEVESKPIGFMTESSGSIDSA- 120

Query: 121 DEFKMLNEVDKNRLFWETCLAS 140
           +EFKMLNEV+KNRLFWETCLAS
Sbjct: 121 EEFKMLNEVEKNRLFWETCLAS 123

BLAST of CsaV3_7G028330 vs. NCBI nr
Match: XP_022953969.1 (uncharacterized protein LOC111456367 [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-23
Identity = 87/142 (61.27%), Postives = 96/142 (67.61%), Query Frame = 0

Query: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60
           MLS+P FFNF+PH +    G HIED SS  LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSTPFFFNFHPHQY----GTHIEDFSSQLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60

Query: 61  CTDDTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTK 120
           CTD+T  +                    XXXXXXXXXXXXXXSK IGF  +S+ASIDS  
Sbjct: 61  CTDETPAM------------RNKVQTYEXXXXXXXXXXXXXXSKPIGFMTESSASIDSA- 120

Query: 121 DEFKMLNEVDKNRLFWETCLAS 140
           +EFKMLNEV+KNRLFWETCLAS
Sbjct: 121 EEFKMLNEVEKNRLFWETCLAS 125

BLAST of CsaV3_7G028330 vs. TrEMBL
Match: tr|A0A0A0K519|A0A0A0K519_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.5e-49
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0

Query: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60
           MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTD 60

Query: 61  DTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTKDEF 120
           DTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTKDEF
Sbjct: 61  DTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNASIDSTKDEF 120

Query: 121 KMLNEVDKNRLFWETCLAS 140
           KMLNEVDKNRLFWETCLAS
Sbjct: 121 KMLNEVDKNRLFWETCLAS 139

BLAST of CsaV3_7G028330 vs. TrEMBL
Match: tr|A0A1S3BRI2|A0A1S3BRI2_CUCME (glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 121/147 (82.31%), Postives = 124/147 (84.35%), Query Frame = 0

Query: 3   SSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE----VDLQSS-SPVSTEFNDAES 62
           +SPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSE    VDL+SS      EFNDAES
Sbjct: 4   TSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSXXXXXXEFNDAES 63

Query: 63  CT-----DDTDRIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSIKSNAS 122
           CT            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SKAIGFSIKSNAS
Sbjct: 64  CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKAIGFSIKSNAS 123

Query: 123 IDSTKDEFKMLNEVDKNRLFWETCLAS 140
           IDSTKD+FKMLNEVDKNRLFWETCLAS
Sbjct: 124 IDSTKDDFKMLNEVDKNRLFWETCLAS 150

BLAST of CsaV3_7G028330 vs. TrEMBL
Match: tr|W9SBN2|W9SBN2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020441 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 77/131 (58.78%), Postives = 91/131 (69.47%), Query Frame = 0

Query: 22  HIEDISSYFLFEATGDSEVDLQSSSP----VSTEFNDAESCT-DDTDRIMXXXXXXXXXX 81
           ++ D+SS+FLFEATGDSE     ++P       + +DAESC+ D TDR     XXXXXXX
Sbjct: 11  NVVDVSSFFLFEATGDSE-SCSKTNPDERVSDLDDDDAESCSWDSTDRCPSNGXXXXXXX 70

Query: 82  XXXXXXXXXXXXXXXXXXXXXXXSKAI--------GFSIKSNASIDSTKDEFKMLNEVDK 140
           XXXXXXXXXXXXXXXXXXXXXXX   +        G   KSN S+DST   F+ LNE++K
Sbjct: 71  XXXXXXXXXXXXXXXXXXXXXXXXDPVQRRTWSGSGERRKSNVSVDSTTKSFESLNEMEK 130

BLAST of CsaV3_7G028330 vs. TrEMBL
Match: tr|A0A2P6PWD0|A0A2P6PWD0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0292431 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.2e-07
Identity = 66/129 (51.16%), Postives = 82/129 (63.57%), Query Frame = 0

Query: 19  QGNHIEDISSYFLFEATGDSEVDLQSSSPVSTEFNDAESCTDDT------DRIMXXXXXX 78
           QG    D+S + LFE +GDSE   +    V    +DAESC+ D+      D ++      
Sbjct: 22  QGQANVDVSPFLLFEDSGDSEAAAEVVFDVPLAEDDAESCSYDSADISSADELIVNGEDD 81

Query: 79  XXXXXXXXXXXXXXXXXXXXXXXXXXXS--KAIGFSIKSNASIDSTKDEFKMLNEVDKNR 138
           XXXX      XXXXXXXXXXXXXXXXXS  +  G  +KS  S+DSTK EF+MLNEV+K++
Sbjct: 82  XXXXGVREYRXXXXXXXXXXXXXXXXXSVYQRCGHQLKSTVSVDSTK-EFEMLNEVEKSK 141

Query: 139 LFWETCLAS 140
           LFWETCLAS
Sbjct: 142 LFWETCLAS 149

BLAST of CsaV3_7G028330 vs. TrEMBL
Match: tr|A0A2P5C845|A0A2P5C845_PARAD (Myelin transcription factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_176210 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 47/143 (32.87%), Postives = 59/143 (41.26%), Query Frame = 0

Query: 25  DISSYFLFEATGDSEVDLQSSSPVS---------TEFNDAESCTDD--TDRIMXXXXXXX 84
           D SS+F+FE T DSE   QS S VS          + +DAESC+ D  TD+         
Sbjct: 13  DASSFFVFEVTADSESCTQSDSAVSGAGESSVAALDEDDAESCSFDYRTDQFRPFDSDSL 72

Query: 85  XXXXXXXXXXXXXXXXXXXXXXXXXXSKAIGFSI-----------------KSNASIDST 140
                                      +     +                 KS AS+DST
Sbjct: 73  SGDEFVIDSEYLEEGEFDDGTDEEEEDETTSHPVHRKWSRTGEIGVPEGNHKSVASVDST 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011659319.16.7e-49100.00PREDICTED: nucleophosmin [Cucumis sativus] >KGN44840.1 hypothetical protein Csa_... [more]
XP_008451422.12.3e-3382.31PREDICTED: glutamic acid-rich protein [Cucumis melo][more]
XP_022991734.11.8e-2565.49uncharacterized protein LOC111488264 [Cucurbita maxima][more]
XP_023522205.11.5e-2457.75uncharacterized protein LOC111786091 [Cucurbita pepo subsp. pepo] >XP_023548487.... [more]
XP_022953969.13.7e-2361.27uncharacterized protein LOC111456367 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K519|A0A0A0K519_CUCSA4.5e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1[more]
tr|A0A1S3BRI2|A0A1S3BRI2_CUCME1.5e-3382.31glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1[more]
tr|W9SBN2|W9SBN2_9ROSA2.5e-0758.78Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020441 PE=4 SV=1[more]
tr|A0A2P6PWD0|A0A2P6PWD0_ROSCH7.2e-0751.16Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0292431 PE=4... [more]
tr|A0A2P5C845|A0A2P5C845_PARAD1.8e-0532.87Myelin transcription factor-like protein OS=Parasponia andersonii OX=3476 GN=Pan... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G028330.1CsaV3_7G028330.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..100
NoneNo IPR availablePANTHERPTHR35726FAMILY NOT NAMEDcoord: 20..139

The following gene(s) are paralogous to this gene:

None