CmaCh17G011390.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G011390.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr17 : 7936878 .. 7937264 (+)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

mRNA sequence

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

Coding sequence (CDS)

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

Protein sequence

MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRLFWETCLAS

Homology

[Close]

BLAST of CmaCh17G011390.1 vs. TrEMBL
Match: A0A0A0K519_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390190 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-33
Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 1


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60

Query: 61  CTDDTP--AMCN-------EFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSA- 120
           CTDDT    +CN       E    ENDDDD D++EE +E VESK IGF  +S+ASIDS  
Sbjct: 61  CTDDTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTK 120

Query: 121 EEFKMLNEVDKNRLFWETCLAS 129
           +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DEFKMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of CmaCh17G011390.1 vs. TrEMBL
Match: W9SBN2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020441 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 1


Query: 18  HIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESC----TDDTPAMCNEFKTYE- 77
           ++ D SS  LFEATGDSE+ S          ++ +DAESC    TD  P+  +   + + 
Sbjct: 11  NVVDVSSFFLFEATGDSESCSKTNPDERVSDLDDDDAESCSWDSTDRCPSNGDSMDSVDA 70

Query: 78  -----NDDDDDDDDEENDEEVESKPI--------GFMTESSASIDS-AEEFKMLNEVDKN 129
                ++DD+DD+ + ++EE  S P+        G   +S+ S+DS  + F+ LNE++KN
Sbjct: 71  IDRNCSNDDEDDECDRDEEEEGSDPVQRRTWSGSGERRKSNVSVDSTTKSFESLNEMEKN 130

[Close]

BLAST of CmaCh17G011390.1 vs. TrEMBL
Match: A0A0L9U9V5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g290000 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-07
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 23  SSHLLFEATGDSEAD---SLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDD 82
           S+++L EATGDSE D   ++  HG   +  E +DA+SC  DT   CNEF   ++D DD D
Sbjct: 9   SNYMLLEATGDSETDCNPTMEEHGCE-IGREDDDAQSCIHDTSETCNEFWNNDHDADDVD 68

Query: 83  DDEENDEEVESKPIGFMTESSAS---------IDSAEEFKMLNEVDKNRLFWETCLAS 129
           DD+ ++++ E     +  +             +      ++L+E++KNR FWE CLAS
Sbjct: 69  DDDGDEKKCEVHGTSYCDDDDDDQMQEHQKFCVSDESGHEVLDEMEKNRRFWEACLAS 125

[Close]

BLAST of CmaCh17G011390.1 vs. TrEMBL
Match: A0A0S3S0K1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G400400 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-07
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 1


Query: 23  SSHLLFEATGDSEAD---SLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDD 82
           S+++L EATGDSE D   ++  HG   +  E +DA+SC  DT   CNEF   ++D DD D
Sbjct: 9   SNYMLLEATGDSETDCNPTMEEHGCE-IGREDDDAQSCIHDTSETCNEFWNNDHDADDVD 68

Query: 83  DDEENDEEVESKPIGFMTESSAS---------IDSAEEFKMLNEVDKNRLFWETCLAS 129
           DD+ ++++ E     +  +             +      ++L+E++KNR FWE CLAS
Sbjct: 69  DDDGDEKKCEVHGTSYCDDDDDDQMQEHQKFCVSDESGHEVLDEMEKNRRFWEACLAS 125

[Close]

BLAST of CmaCh17G011390.1 vs. TrEMBL
Match: A0A0D2RZ69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G140100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 52/145 (35.86%), Postives = 73/145 (50.34%), Query Frame = 1


Query: 21  DFSSHLLFEATGDSEADSL-------VGHGSSTVSVEFNDAESCTDDTP----------- 80
           D SS LLFEATGDSE+          + H       +  DAESC+ DT            
Sbjct: 12  DVSSFLLFEATGDSESGCSSDPAMVDISHDDDGDDDDDGDAESCSCDTAPDVVHGVREIG 71

Query: 81  -AMCNEFKTYEN--DDDDDDDDEE----------------NDEEVESKPIGFMTESSASI 129
            ++ N+F       DD+DDDDD++                +DE +E   +G   +SS+S 
Sbjct: 72  GSLKNKFANVVEGVDDEDDDDDDDGVVEQKEVQLYKKGCRDDERIEGVGVGKEKKSSSSA 131

[Close]

BLAST of CmaCh17G011390.1 vs. NCBI nr
Match: gi|778727786|ref|XP_011659319.1| (PREDICTED: nucleophosmin [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33
Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 1


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60

Query: 61  CTDDTP--AMCN-------EFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSA- 120
           CTDDT    +CN       E    ENDDDD D++EE +E VESK IGF  +S+ASIDS  
Sbjct: 61  CTDDTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTK 120

Query: 121 EEFKMLNEVDKNRLFWETCLAS 129
           +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DEFKMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of CmaCh17G011390.1 vs. NCBI nr
Match: gi|659101093|ref|XP_008451422.1| (PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-33
Identity = 96/150 (64.00%), Postives = 106/150 (70.67%), Query Frame = 1


Query: 1   MLST-PFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVG--HGSSTVSVEFND 60
           MLST P FFNF+PH F    GNHIED SS+ LFEATGDSEADS V     SS  + EFND
Sbjct: 1   MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSSASTTEFND 60

Query: 61  AESCTDDTPAM-CNEF------------KTYENDDDD-DDDDEENDEEVESKPIGFMTES 120
           AESCTDDTP M CN              +  ENDDDD DD+DEE +E VESK IGF  +S
Sbjct: 61  AESCTDDTPTMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKS 120

Query: 121 SASIDSA-EEFKMLNEVDKNRLFWETCLAS 129
           +ASIDS  ++FKMLNEVDKNRLFWETCLAS
Sbjct: 121 NASIDSTKDDFKMLNEVDKNRLFWETCLAS 150

[Close]

BLAST of CmaCh17G011390.1 vs. NCBI nr
Match: gi|657989121|ref|XP_008386748.1| (PREDICTED: uncharacterized protein LOC103449241 [Malus domestica])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1


Query: 18  HIEDFSSHLLFEATGDSEADSLVGHGSSTV--SVEFNDAESCTDDT-------PAMCNEF 77
           ++ D SS +LFEATGDSEAD++       +    + +DA+SC+ D+         + N+ 
Sbjct: 29  NVMDVSSFMLFEATGDSEADAVSSDDDHPMLSMADEDDAQSCSYDSFDRNPIADDVLNDL 88

Query: 78  KTYENDDDDDDDDEENDEEVESKPI-------------------GFMTESSASIDSAEEF 129
             +  DDDD  +DEE DEE E   +                   G   +S+ S+DS +EF
Sbjct: 89  DDHGRDDDDRGNDEEEDEEEECSSVYDHHQRWRSGENVGMPLMGGHQLKSTVSVDSTKEF 148

[Close]

BLAST of CmaCh17G011390.1 vs. NCBI nr
Match: gi|645258628|ref|XP_008234972.1| (PREDICTED: putative uncharacterized protein YGR160W [Prunus mume])

HSP 1 Score: 69.7 bits (169), Expect = 4.2e-09
Identity = 51/144 (35.42%), Postives = 79/144 (54.86%), Query Frame = 1


Query: 21  DFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCT-----------------DDTPA 80
           D SS LLFEA+GDSEAD    +   ++++  +DA+SC+                 DD   
Sbjct: 26  DLSSFLLFEASGDSEADQ--NYPDPSLAMAEDDAQSCSYDSTDIPDADDDELHDIDDQGD 85

Query: 81  MCNEFKTYENDDDDDDDDEENDEEVESKP-------------------IGFMTESSASID 129
             ++  ++ +DDDD+D++EE +EE  S                     +G   +S+ S+D
Sbjct: 86  SVDQAYSHGDDDDDEDEEEEGEEEECSSVYHQRWGGGEHNNIGMPLPLMGHQLKSTVSVD 145

[Close]

BLAST of CmaCh17G011390.1 vs. NCBI nr
Match: gi|764534998|ref|XP_011458655.1| (PREDICTED: uncharacterized protein LOC105349775 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-09
Identity = 51/127 (40.16%), Postives = 76/127 (59.84%), Query Frame = 1


Query: 21  DFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDDD 80
           D S  LLFE +GDSEA S V    S V +  +DAESC+ D+  + +  +    DDD+D++
Sbjct: 33  DVSPFLLFEDSGDSEAASEV---VSDVLMAEDDAESCSWDSADVSSADELIVIDDDEDEE 92

Query: 81  DE-----------ENDEEVESKPI--------GFMTESSASIDSAEEFKMLNEVDKNRLF 129
           D+           +++EE E + +        G   +S+ S+DS +EF+MLNEV+K++LF
Sbjct: 93  DDRGVREYRSYSDDHEEEGEEEEVMSSDYQRWGHQLKSTVSVDSTKEFEMLNEVEKSKLF 152

The following BLAST results are available for this feature:

BLAST of CmaCh17G011390.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G011390.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K519_CUCSA	2.2e-33	64.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390190 PE=4 SV=1	[more]
W9SBN2_9ROSA	1.4e-08	38.46	Uncharacterized protein OS=Morus notabilis GN=L484_020441 PE=4 SV=1	[more]
A0A0L9U9V5_PHAAN	7.9e-07	35.59	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g290000 PE=4 SV=1	[more]
A0A0S3S0K1_PHAAN	7.9e-07	35.59	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G400400 PE=...	[more]
A0A0D2RZ69_GOSRA	1.8e-06	35.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G140100 PE=4 SV=1	[more]

BLAST of CmaCh17G011390.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh17G011390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727786\|ref\|XP_011659319.1\|	3.2e-33	64.79	PREDICTED: nucleophosmin [Cucumis sativus]	[more]
gi\|659101093\|ref\|XP_008451422.1\|	5.4e-33	64.00	PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 [Cucumis ...	[more]
gi\|657989121\|ref\|XP_008386748.1\|	4.5e-11	38.13	PREDICTED: uncharacterized protein LOC103449241 [Malus domestica]	[more]
gi\|645258628\|ref\|XP_008234972.1\|	4.2e-09	35.42	PREDICTED: putative uncharacterized protein YGR160W [Prunus mume]	[more]
gi\|764534998\|ref\|XP_011458655.1\|	7.1e-09	40.16	PREDICTED: uncharacterized protein LOC105349775 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh17G011390	CmaCh17G011390	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011390.1	CmaCh17G011390.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011390.1.exon.1	CmaCh17G011390.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh17G011390.1.CDS.1	CmaCh17G011390.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35726	FAMILY NOT NAMED	coord: 13..128 score: 3.0