CmaCh17G003000 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G003000
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA mismatch repair mutS
LocationCma_Chr17 : 1601621 .. 1606071 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAGAACTTGAGGACGGAAAATAACAAATTCTCTCTCTGAAGCCGCTGGACGTCGCCGCTGTTAGCTCCGTAGCTTGAGCTCTCTAAGTACCTCTGAAGCGTCGAGGCATAAACCACTCTTTTTTCTTTTGGAAATTACAATGGATTCCGTTTTATAATCATGTTAATGCGTTTTGTTTTTGGATTCTCAGTTGAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATCAAAACGGGCTTCTGTGTGAGAACTCTCCTTCTTCTCTTCCTTCTTCCTCAATTCACCATTTTAAATTCTTTTTCTTCACTGTGTTTAGTTGATATGCTTGTTGTAATGGCTTTTTCGTCTTCATTTAGGTCTGTCTTTCGATAAATCTTATAAAATTGATTCGCTACGAGGATCGGAGGTGTTGTTAATAGTTCTTTACAATTTTTTTTATGCTTTATGTCTGCGTAGATGGAAGAAATCTTGCTTTTCAATGAGTATACACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAGTAAATAAGTGGTATTGAGTGGAAACTGTAATGAGCCGCAAGCTTCATGGGAGTTTGTTTTTATAGTTTTGTGGCATATAATATTTGAGGCTGAAGCTTATGCCAAATTCCCAACAGTTGTGGCTGCTGCTATTAATTTAACTGATAGTGATAAAATTTAGTAGAATCCTGGCTGTGATTCCTTCAACTGTTTCATAGCTCTCCTAATGTAGTCTTCATTTGCATCTTATTTTTCTTGTCCAAGTTCCTTATTAAAGCCATCTTCTCTCATTCAAAGAAGCGAAGGTGTCGACAACTTGAGCGCACAACTCAATTGGTTAACACATTGAGTTATCAACCAAAATGTCTAAGGTTTGAATTCCTGCCCACATATTCACCTATAAAATTGAAAACAAAAAAAGCAAAACAAACAAAAAAACAGCACACTAGAGGATTCAGGAGTGTAAAAAAGCAACCAACTGGAGGAACCAAAAGAACACCAAACCAACTGCAAAAGTTATTGCAAAAAACTCGAAAGAGGGAAACTAAAAAGACAACAACAAAGGCAAAAACTAGCAGTCTTCCACTATAGTAAACAATTGGAAAACATTTTTGTAGTTTTATTTAGGGGAGGGGGTTTTCTCTCCGCTGTCCATCCTCTTTTATTTTGATTAATAAATATCATATCGTCTTTTTATCTAAAAAAACAAAAAAGTTAGCAGGCCTAGATGAGCAAAACCACTAGAATCATCTGAAATCTTTCCCACTGAAAAGAGGAGAGCAGAGAAAAGACTTGAACCGCCACAACCCACCAAACAAATAAGCAAAATCAGCAAAGCCAGCTGAGAGTGGGACTCCTCAACTGGACTAGAACACCCATACCAGACCAACCAAGGCCCTGGACAACCTTAAATCTTGAGAGACTACAACACTTTTTTTTTTCTTTTTTTTTAATGGATTCTTAAATATAAGATGGTACTGATTCATTGGTGCATGCACACGTTGAATTTGATTCAATTGTAAACACTGTGAATCAGACTGAGCCTCTTTCTTCGTCCTCCTTTCCATGAGAAAGGAAATCTTTTGTTGCAAGCTGGGGCTGTGCCATCCTTCAGGGCGTTTGTGGCTAAACCTATTGTAATTATTCATTAGGTCTTGTTGGATTGGAGGCCGTTCTTGTAGGCTACCTCCCTTTTTTTGTGGGCTCGTCTTTTTTGTATGCTCTTGTATTCTTTCATTTTTCCTCAATGAATGTTCGGTTATTCATCAAGGAAAAATACTAGTTTTTTTAACAAGAAAGAAAGTACTACTTATGAGTAATATGGAAGTGCTGGTTCAATTGCGCTCTTTTCAAGTCAGTTTCTTGTTTGATGGCCTGTTGATTGGTATATGATGCTGTCTTTATTTTGCCTTTGCATCTTCAGATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCAGAGTAGCTGCTTTGCAAGGTTTGTTCATCATTCCATCCTTATAATCAGCCTAACTGAGGTTGAAATAATTTTTTGTTTTTTTTCCCCACCCAAAATGGATGTCTAACATACTGTTTAAAAATTTAAAAACTGAGGATGAGATCGGCTTTTAGAAAATTCAACTGCTTGACAAAAGCTTTAGAAATCAAACGGAATGCACTGAAACCAACCAAAACCCGAAAATATACTGATTAGATTTCTGCTTTACACCTTAGAAAACCAACATTACTTGAACGATGGAACCCACCGATGGTTAGAAATCACAACCCTCCACAATGGTATGATATTATCCACTTTGAGCATAAGCTCTCATGAATTTGCTTTTGGTTTCCTCAAAAGGCCTCATACCAATTGAGATGTAGTCCTTACTTATAAATTCATGATCATCCCCTTAATTAGCCGATATGGGACTCCTCTCCCAACAATCCCCCTCTGAAATAGAGTACACCATAAAGCCTCCCCTTAGGCCTATGGAGCCCTCAAACAGCCTCCCCTTAATCGAGGCTCGACTCCTTCTCTGGAGCCTTCGAACAAAGTACATCATTTGTTTGACACTTGAGTCACTTTTGACTACACCTTCAAGACTCACAATTTTTCTGTTCGACATTTGAGGATTCTATTGGCATGGCGGTTCAATTAGTTTTTTTTTTTCTCAGTTCTAAGGCCCCTATGCCTTGACTCGATATTCGAGTGAACTTGTTTGATTGCCTGGTTTCCTATACAGAAAAACCACGAACTTTTTAAAACAAACAACAGTGCCAGTGTTGTAGCAGGAAATTCAAAATGTACGGGTCAAGATTCAAAGTGGGATCGACAATGTTGGAGTTTGATTTTGGAACTTTTCCCCTCTTTTTTTTATAGAAAACTTAGGATCCAGGAGTAAATGTGTGAGAAGTTAGTGCAAACTTATTCAATTAATTTTCATTAGTCATTTTTGACTTATTAGAAATGAATGTTAGTTGCACTTATGGCTTGTAATTAGGAAAGATGTTAGTTGCACTTATGGTCCATAGGTCGGTCTAGTGATCATTGGACGAAGTAACGGAAGCAAGATGATTATAAAAAAATGAGATCAAATCCCATAAACATACCTAAGATATCGCAAACAAGTGAGTTTTTTTATCACCAAATATTTCTAGGTCAGGGTGTCAATTTACACAGTTTAGTTCAAATTCTCACAAATTTTTTATTATCAAATAAAATGCTAAATAACTGTCGCATTTGAAACAACAACTCTAACCCATCAAAACTTTTTAATGGAACCAACTCTATGAAGGAAAATAACTGTTAAATTTTGCGTCTTATAAGATTAGTCAAGATGCATGTAACTAGCTTTAAGAATCATAAAAAAAAAAAAATCCGTGACATTTGAAAACAAAAACTACCCGTTATAGCTTTCTGGTTGAACAAAATTTCAAGAGGAAAATATCCCTTAAATTCTTGCACATGATGAAGAAGCTTGATTTTGATGAAAGTCAAATATTTCTCCCAACTCTCTTCTTACCAAACGAAGACTTTGACCTTGTTGATCCATAATACCCTAGCACTTTAGCCTGCATCCACATAAAAGACTATCCCAAGAACAACCGAATCACTGTAACACTGCCTCCAAAACTTTTCTAATGAATGAACAAGAAAGAACAAATTGTGGCTTTAGGATATTCGAACTTCAAACAAACATACTTATAATGATCCTACCATTGTTTTTAAGACATGAACCGACACTCTGTTCGTTTACATCGGTATACAAGAACTCTCTTCTTACAAAAACCCTCATTGCCACAGTATTTAGCGGTTTCTTCTTGTCGGTTTTGCAGGTTGAGAACAAAATTACCGGTGATTAGGAGATACGAGCTCAGGCTTTTAAGTTTCACCTAATAAGATGAGGGATTTCCGAAAGCTGTTTCTTTATGACATTGGAGGTCTTCTTATGATTGATTCCATATTAAAGACGAATGATATCACCAAACCAAAGGTCTGATAATTCAATTCTTAGCAATCTCTTATGGTAGAAATGACAGATTTTCATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGACTGTCATTCTGATTCACTTAACTCATCATGCCTTCTGGAATATAGTACTTAGGTTGTTATAAGTCGTGACTCGAAACCTACCAGATGATTTGACTATGTTATGCAGTACACACCATTGTTGAAAATATTTCTTAGGTGAAAGAAAAAGAATGTCTAACAATCAGTCTGAATCTTATTTTGGTCAAACTTTCACACTATCCAAATTTACTTTTTAC

mRNA sequence

TTGAGAACTTGAGGACGGAAAATAACAAATTCTCTCTCTGAAGCCGCTGGACGTCGCCGCTGTTAGCTCCGTAGCTTGAGCTCTCTAAGTACCTCTGAAGCGTCGAGGCATAAACCACTCTTTTTTCTTTTGGAAATTACAATGGATTCCGTTTTATAATCATGTTAATGCGTTTTGTTTTTGGATTCTCAGTTGAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATCAAAACGGGCTTCTATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCAGAGTAGCTGCTTTGCAAGGTTGAGAACAAAATTACCGGTGATTAGGAGATACGAGCTCAGGCTTTTAAGTTTCACCTAATAAGATGAGGGATTTCCGAAAGCTGTTTCTTTATGACATTGGAGGTCTTCTTATGATTGATTCCATATTAAAGACGAATGATATCACCAAACCAAAGGTCTGATAATTCAATTCTTAGCAATCTCTTATGGTAGAAATGACAGATTTTCATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGACTGTCATTCTGATTCACTTAACTCATCATGCCTTCTGGAATATAGTACTTAGGTTGTTATAAGTCGTGACTCGAAACCTACCAGATGATTTGACTATGTTATGCAGTACACACCATTGTTGAAAATATTTCTTAGGTGAAAGAAAAAGAATGTCTAACAATCAGTCTGAATCTTATTTTGGTCAAACTTTCACACTATCCAAATTTACTTTTTAC

Coding sequence (CDS)

ATGTTAATGCGTTTTGTTTTTGGATTCTCAGTTGAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATCAAAACGGGCTTCTATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAA

Protein sequence

MLMRFVFGFSVEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Homology
[Close]
BLAST of CmaCh17G003000 vs. TrEMBL
Match: A0A0A0K8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067430 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.6e-26
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 13 MKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPW 72
          MKFL WYVKIGTVSALIG SME+FMIK+GFYDKV V+ESE++AWENSPEAQAIREALNPW
Sbjct: 1  MKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPW 60

Query: 73 RNHDAAEEARKD 85
          RN DAA EA K+
Sbjct: 61 RNSDAATEAGKE 72

[Close]
BLAST of CmaCh17G003000 vs. TrEMBL
Match: A0A151U461_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_006780 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-24
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 13 MKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPW 72
          MKFL WY+KIG VSAL+GASMEMFMIKTGFYDKVTVLESEK AWENSP+AQAIREALNPW
Sbjct: 1  MKFLDWYLKIGVVSALVGASMEMFMIKTGFYDKVTVLESEKRAWENSPDAQAIREALNPW 60

Query: 73 RNHDAAEEARK 84
          R+ D AEE +K
Sbjct: 61 RHID-AEETKK 70

[Close]
BLAST of CmaCh17G003000 vs. TrEMBL
Match: A0A0S3T9L9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G094300 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-24
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 1 

Query: 11 VEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALN 70
          ++MKFL WY+KIG VSALIGASME+FMIKTGFYDKVTVLESEK AWENSP+AQAIREALN
Sbjct: 2  LKMKFLDWYLKIGFVSALIGASMEVFMIKTGFYDKVTVLESEKRAWENSPDAQAIREALN 61

Query: 71 PWRNHDAAEEARK 84
          PWR+ D AEE +K
Sbjct: 62 PWRHID-AEETKK 73

[Close]
BLAST of CmaCh17G003000 vs. TrEMBL
Match: A0A0L9VMY5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g198600 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 13 MKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPW 72
          MKFL WY+KIG VSALIGASME+FMIKTGFYDKVTVLESEK AWENSP+AQAIREALNPW
Sbjct: 1  MKFLDWYLKIGFVSALIGASMEVFMIKTGFYDKVTVLESEKRAWENSPDAQAIREALNPW 60

Query: 73 RNHDAAEEARK 84
          R+ D AEE +K
Sbjct: 61 RHID-AEETKK 70

[Close]
BLAST of CmaCh17G003000 vs. TrEMBL
Match: F6HDI9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02090 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 1 

Query: 4  RFVFGFSVEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQ 63
          RF+  F   MKFL WY+KI  VSALIGASME+FMIKTGFYDKVTVLESEK+AWE S EAQ
Sbjct: 19 RFIAFFRNIMKFLDWYLKIAAVSALIGASMELFMIKTGFYDKVTVLESEKLAWEGSTEAQ 78

Query: 64 AIREALNPWRNHDAAEEARKDT 86
          A++EALNPWR+ DA E  RKD+
Sbjct: 79 AVKEALNPWRHQDAIE--RKDS 98

[Close]
BLAST of CmaCh17G003000 vs. TAIR10
Match: AT3G62450.1 (AT3G62450.1 unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-22
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 11 VEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALN 70
          ++ +FL WY+KI   SA+IG  ME FMIKTGFYDKVTV+E+E+ A ENSPEAQAIREALN
Sbjct: 2  MKTRFLDWYLKIAIGSAIIGGGMEFFMIKTGFYDKVTVIEAERRALENSPEAQAIREALN 61

Query: 71 PWRNHDA 78
          PWRN DA
Sbjct: 62 PWRNKDA 68

[Close]
BLAST of CmaCh17G003000 vs. NCBI nr
Match: gi|700190981|gb|KGN46185.1| (hypothetical protein Csa_6G067430 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 9.5e-26
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 1 

Query: 13 MKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPW 72
          MKFL WYVKIGTVSALIG SME+FMIK+GFYDKV V+ESE++AWENSPEAQAIREALNPW
Sbjct: 1  MKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPW 60

Query: 73 RNHDAAEEARKD 85
          RN DAA EA K+
Sbjct: 61 RNSDAATEAGKE 72

[Close]
BLAST of CmaCh17G003000 vs. NCBI nr
Match: gi|1012362929|gb|KYP74112.1| (hypothetical protein KK1_006780 [Cajanus cajan])

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-24
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 

Query: 13 MKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPW 72
          MKFL WY+KIG VSAL+GASMEMFMIKTGFYDKVTVLESEK AWENSP+AQAIREALNPW
Sbjct: 1  MKFLDWYLKIGVVSALVGASMEMFMIKTGFYDKVTVLESEKRAWENSPDAQAIREALNPW 60

Query: 73 RNHDAAEEARK 84
          R+ D AEE +K
Sbjct: 61 RHID-AEETKK 70

[Close]
BLAST of CmaCh17G003000 vs. NCBI nr
Match: gi|965616518|dbj|BAU01668.1| (hypothetical protein VIGAN_11094300 [Vigna angularis var. angularis])

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-24
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 1 

Query: 11 VEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALN 70
          ++MKFL WY+KIG VSALIGASME+FMIKTGFYDKVTVLESEK AWENSP+AQAIREALN
Sbjct: 2  LKMKFLDWYLKIGFVSALIGASMEVFMIKTGFYDKVTVLESEKRAWENSPDAQAIREALN 61

Query: 71 PWRNHDAAEEARK 84
          PWR+ D AEE +K
Sbjct: 62 PWRHID-AEETKK 73

[Close]
BLAST of CmaCh17G003000 vs. NCBI nr
Match: gi|1000971259|ref|XP_002516849.2| (PREDICTED: uncharacterized protein LOC8262369 [Ricinus communis])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 9   FSVEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREA 68
           ++V MKF+ WY KI   SAL+GASME+FMIKTGFYDKVTVLESEK AWE+S EAQAIREA
Sbjct: 38  YTVRMKFVDWYAKIAVGSALVGASMELFMIKTGFYDKVTVLESEKRAWESSSEAQAIREA 97

Query: 69  LNPWRNHDAAEEARKD 85
           LNPWRNHDA  EARK+
Sbjct: 98  LNPWRNHDA--EARKN 111

[Close]
BLAST of CmaCh17G003000 vs. NCBI nr
Match: gi|950931638|ref|XP_014507389.1| (PREDICTED: uncharacterized protein LOC106767078 [Vigna radiata var. radiata])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 59/73 (80.82%), Postives = 67/73 (91.78%), Query Frame = 1 

Query: 11 VEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALN 70
          ++MKFL WY+KIG VSAL+GASME+FMIKTGFYDKVTVLESEK AWENSP+AQAIREALN
Sbjct: 2  LKMKFLDWYLKIGFVSALVGASMEVFMIKTGFYDKVTVLESEKRAWENSPDAQAIREALN 61

Query: 71 PWRNHDAAEEARK 84
          PWR+ D AEE +K
Sbjct: 62 PWRHID-AEETKK 73

The following BLAST results are available for this feature:
BLAST of CmaCh17G003000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G003000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8V0_CUCSA6.6e-2683.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067430 PE=4 SV=1[more]
A0A151U461_CAJCA2.8e-2484.51Uncharacterized protein OS=Cajanus cajan GN=KK1_006780 PE=4 SV=1[more]
A0A0S3T9L9_PHAAN6.2e-2482.19Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G094300 PE=... [more]
A0A0L9VMY5_PHAAN1.1e-2384.51Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g198600 PE=4 SV=1[more]
F6HDI9_VITVI1.1e-2373.17Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02090 PE=4 SV=... [more]
BLAST of CmaCh17G003000 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G62450.15.2e-2271.64 unknown protein[more]
BLAST of CmaCh17G003000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190981|gb|KGN46185.1|9.5e-2683.33hypothetical protein Csa_6G067430 [Cucumis sativus][more]
gi|1012362929|gb|KYP74112.1|4.0e-2484.51hypothetical protein KK1_006780 [Cajanus cajan][more]
gi|965616518|dbj|BAU01668.1|8.9e-2482.19hypothetical protein VIGAN_11094300 [Vigna angularis var. angularis][more]
gi|1000971259|ref|XP_002516849.2|1.2e-2377.63PREDICTED: uncharacterized protein LOC8262369 [Ricinus communis][more]
gi|950931638|ref|XP_014507389.1|1.2e-2380.82PREDICTED: uncharacterized protein LOC106767078 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G003000.1CmaCh17G003000.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36377FAMILY NOT NAMEDcoord: 11..85
score: 4.5
NoneNo IPR availablePANTHERPTHR36377:SF1SUBFAMILY NOT NAMEDcoord: 11..85
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G003000Cucsa.363330Cucumber (Gy14) v1cgycmaB0999
CmaCh17G003000Cla009340Watermelon (97103) v1cmawmB358
CmaCh17G003000Csa6G067430Cucumber (Chinese Long) v2cmacuB370
CmaCh17G003000ClCG06G005480Watermelon (Charleston Gray)cmawcgB328
CmaCh17G003000CSPI06G05330Wild cucumber (PI 183967)cmacpiB374
CmaCh17G003000CmoCh17G002880Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G003000Lsi09G013880Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G003000Cp4.1LG12g02470Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G003000MELO3C035183.2Melon (DHL92) v3.6.1cmamedB365
CmaCh17G003000Cla97C06G114990Watermelon (97103) v2cmawmbB377
CmaCh17G003000Bhi12G001564Wax gourdcmawgoB0463
CmaCh17G003000CsGy6G005290Cucumber (Gy14) v2cgybcmaB754
CmaCh17G003000Carg05481Silver-seed gourdcarcmaB0091
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G003000Wax gourdcmawgoB0473
CmaCh17G003000Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G003000Cucurbita maxima (Rimu)cmacmaB373
CmaCh17G003000Cucurbita maxima (Rimu)cmacmaB369
CmaCh17G003000Cucumber (Gy14) v1cgycmaB0714
CmaCh17G003000Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G003000Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G003000Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G003000Wild cucumber (PI 183967)cmacpiB359
CmaCh17G003000Wild cucumber (PI 183967)cmacpiB385
CmaCh17G003000Cucumber (Chinese Long) v2cmacuB355
CmaCh17G003000Cucumber (Chinese Long) v2cmacuB381
CmaCh17G003000Melon (DHL92) v3.5.1cmameB313
CmaCh17G003000Melon (DHL92) v3.5.1cmameB342
CmaCh17G003000Watermelon (Charleston Gray)cmawcgB320
CmaCh17G003000Watermelon (97103) v1cmawmB344
CmaCh17G003000Cucurbita pepo (Zucchini)cmacpeB388
CmaCh17G003000Cucurbita pepo (Zucchini)cmacpeB403
CmaCh17G003000Cucurbita pepo (Zucchini)cmacpeB412
CmaCh17G003000Bottle gourd (USVL1VR-Ls)cmalsiB353
CmaCh17G003000Cucumber (Gy14) v2cgybcmaB345
CmaCh17G003000Melon (DHL92) v3.6.1cmamedB398
CmaCh17G003000Silver-seed gourdcarcmaB0455
CmaCh17G003000Silver-seed gourdcarcmaB0848
CmaCh17G003000Silver-seed gourdcarcmaB1154
CmaCh17G003000Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G003000Cucumber (Chinese Long) v3cmacucB0442
CmaCh17G003000Watermelon (97103) v2cmawmbB366