Cla97C06G114990 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G114990
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DNA mismatch repair protein
Location	Cla97Chr06 : 5909862 .. 5910155 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTTTTGTTTCGGGTAAAAAATAATAATAATAATAATAAAGAAAGTACTGGTTTTAAGGAAGTACTGATTCAATCGCTCTATTTAAATCAGTTTCTTGTTTGATGGTCTGTTGATTGGTATATGACGTTCACTCTATTTTGGCTTTGCGTCCTACAGATGATAAAGTAACAGTTTTAGAGTCGGAGAAGCTGGCTTGGGAAAATTCTCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGACCAGGGAAGACACCTAA

mRNA sequence

ATGGAACTTTTTGTTTCGGATGATAAAGTAACAGTTTTAGAGTCGGAGAAGCTGGCTTGGGAAAATTCTCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGACCAGGGAAGACACCTAA

Coding sequence (CDS)

ATGGAACTTTTTGTTTCGGATGATAAAGTAACAGTTTTAGAGTCGGAGAAGCTGGCTTGGGAAAATTCTCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGACCAGGGAAGACACCTAA

Protein sequence

MELFVSDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETREDT

Homology

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BLAST of Cla97C06G114990 vs. NCBI nr
Match: XP_022959449.1 (uncharacterized protein LOC111460420 [Cucurbita moschata] >XP_022959450.1 uncharacterized protein LOC111460420 [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MELFVSD----DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETREDT 50
          ME+F+      DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA E R+DT
Sbjct: 21 MEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 73

[Close]

BLAST of Cla97C06G114990 vs. NCBI nr
Match: XP_023006006.1 (uncharacterized protein LOC111498883 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MELFVSD----DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETREDT 50
          ME+F+      DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA E R+DT
Sbjct: 31 MEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 83

[Close]

BLAST of Cla97C06G114990 vs. NCBI nr
Match: XP_023548311.1 (uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MELFVSD----DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETREDT 50
          ME+F+      DKVTVLESEK+AWENSPEAQAIREALNPWRN DAA E R+DT
Sbjct: 26 MEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 78

[Close]

BLAST of Cla97C06G114990 vs. NCBI nr
Match: XP_022138621.1 (uncharacterized protein LOC111009736 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 9.7e-11
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MELFVSD----DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETRED 49
           ME+F+      DKVTVLESEKLAWENSPEAQA+REALNPWRN DA AE ++D
Sbjct: 101 MEMFMIKTGFYDKVTVLESEKLAWENSPEAQAVREALNPWRNRDAVAEAKKD 152

[Close]

BLAST of Cla97C06G114990 vs. NCBI nr
Match: KGN46185.1 (hypothetical protein Csa_6G067430 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  MELFVSD----DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETRED 49
          MELF+      DKV V+ESE+LAWENSPEAQAIREALNPWRNSDAA E  ++
Sbjct: 21 MELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPWRNSDAATEAGKE 72

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BLAST of Cla97C06G114990 vs. TrEMBL
Match: tr|A0A251S6R2|A0A251S6R2_HELAN (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0466771 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.2e-10
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 6   SDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAA 44
           SDDKVTVLESEK AWENSPEAQA+REALNPWRN+DA A
Sbjct: 95  SDDKVTVLESEKRAWENSPEAQAMREALNPWRNTDANA 132

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BLAST of Cla97C06G114990 vs. TrEMBL
Match: tr|A0A0A0K8V0|A0A0A0K8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067430 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.2e-10
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  MELFVSD----DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETRED 49
          MELF+      DKV V+ESE+LAWENSPEAQAIREALNPWRNSDAA E  ++
Sbjct: 21 MELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPWRNSDAATEAGKE 72

[Close]

BLAST of Cla97C06G114990 vs. TrEMBL
Match: tr|A0A2P5ERU9|A0A2P5ERU9_9ROSA (DNA mismatch repair protein OS=Trema orientalis OX=63057 GN=TorRG33x02_158480 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MELFV--SDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETR 47
          MELF+  +D+KVTVLESEK AWE+SPEAQA+REALNPWRN D  AE R
Sbjct: 29 MELFMIKTDEKVTVLESEKRAWESSPEAQAMREALNPWRNQDTEAEKR 76

[Close]

BLAST of Cla97C06G114990 vs. TrEMBL
Match: tr|A0A0B0NMR0|A0A0B0NMR0_GOSAR (DNA mismatch repair mutS OS=Gossypium arboreum OX=29729 GN=F383_18789 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 7   DDKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 42
           DDKVTVLESEK AWENSPEAQA+REALNPWRN DA
Sbjct: 76  DDKVTVLESEKRAWENSPEAQAMREALNPWRNHDA 110

[Close]

BLAST of Cla97C06G114990 vs. TrEMBL
Match: tr|A0A1R3JUF5|A0A1R3JUF5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13955 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 6  SDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 42
          S+DKVTVLESEK AWENSPEAQA+REALNPWRN DA
Sbjct: 13 SNDKVTVLESEKRAWENSPEAQAMREALNPWRNQDA 48

[Close]

BLAST of Cla97C06G114990 vs. TAIR10
Match: AT3G62450.1 (unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-10
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 8  DKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 42
          DKVTV+E+E+ A ENSPEAQAIREALNPWRN DA
Sbjct: 35 DKVTVIEAERRALENSPEAQAIREALNPWRNKDA 68

The following BLAST results are available for this feature:

BLAST of Cla97C06G114990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959449.1	2.0e-11	75.47	uncharacterized protein LOC111460420 [Cucurbita moschata] >XP_022959450.1 unchar...	[more]
XP_023006006.1	2.0e-11	75.47	uncharacterized protein LOC111498883 [Cucurbita maxima]	[more]
XP_023548311.1	2.0e-11	75.47	uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo]	[more]
XP_022138621.1	9.7e-11	73.08	uncharacterized protein LOC111009736 [Momordica charantia]	[more]
KGN46185.1	1.4e-09	71.15	hypothetical protein Csa_6G067430 [Cucumis sativus]	[more]

BLAST of Cla97C06G114990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251S6R2\|A0A251S6R2_HELAN	9.2e-10	89.47	Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0466771 PE...	[more]
tr\|A0A0A0K8V0\|A0A0A0K8V0_CUCSA	9.2e-10	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067430 PE=4 SV=1	[more]
tr\|A0A2P5ERU9\|A0A2P5ERU9_9ROSA	1.2e-09	75.00	DNA mismatch repair protein OS=Trema orientalis OX=63057 GN=TorRG33x02_158480 PE...	[more]
tr\|A0A0B0NMR0\|A0A0B0NMR0_GOSAR	7.8e-09	91.43	DNA mismatch repair mutS OS=Gossypium arboreum OX=29729 GN=F383_18789 PE=4 SV=1	[more]
tr\|A0A1R3JUF5\|A0A1R3JUF5_9ROSI	7.8e-09	88.89	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13955 PE=4 SV=1	[more]

BLAST of Cla97C06G114990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G114990 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62450.1	7.6e-10	82.35	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G114990.1	Cla97C06G114990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36377	FAMILY NOT NAMED	coord: 8..44

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G114990	Cla009340	Watermelon (97103) v1	wmwmbB406
Cla97C06G114990	Csa6G067430	Cucumber (Chinese Long) v2	cuwmbB473
Cla97C06G114990	ClCG06G005480	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G114990	CSPI06G05330	Wild cucumber (PI 183967)	cpiwmbB500
Cla97C06G114990	Cucsa.363330	Cucumber (Gy14) v1	cgywmbB624
Cla97C06G114990	CmaCh17G003000	Cucurbita maxima (Rimu)	cmawmbB377
Cla97C06G114990	CmoCh17G002880	Cucurbita moschata (Rifu)	cmowmbB361
Cla97C06G114990	Lsi09G013880	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G114990	CsGy6G005290	Cucumber (Gy14) v2	cgybwmbB452
Cla97C06G114990	Carg05481	Silver-seed gourd	carwmbB0070
Cla97C06G114990	Bhi12G001564	Wax gourd	wgowmbB087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G114990	Watermelon (97103) v2	wmbwmbB137
Cla97C06G114990	Silver-seed gourd	carwmbB0334
Cla97C06G114990	Silver-seed gourd	carwmbB0632
Cla97C06G114990	Silver-seed gourd	carwmbB0868
Cla97C06G114990	Cucumber (Gy14) v2	cgybwmbB222
Cla97C06G114990	Cucumber (Gy14) v1	cgywmbB453
Cla97C06G114990	Cucurbita maxima (Rimu)	cmawmbB266
Cla97C06G114990	Cucurbita maxima (Rimu)	cmawmbB865
Cla97C06G114990	Cucurbita maxima (Rimu)	cmawmbB921
Cla97C06G114990	Cucurbita moschata (Rifu)	cmowmbB246
Cla97C06G114990	Cucurbita moschata (Rifu)	cmowmbB837
Cla97C06G114990	Cucurbita moschata (Rifu)	cmowmbB896
Cla97C06G114990	Wild cucumber (PI 183967)	cpiwmbB239
Cla97C06G114990	Cucumber (Chinese Long) v3	cucwmbB233
Cla97C06G114990	Cucumber (Chinese Long) v3	cucwmbB493
Cla97C06G114990	Cucumber (Chinese Long) v2	cuwmbB231
Cla97C06G114990	Bottle gourd (USVL1VR-Ls)	lsiwmbB344
Cla97C06G114990	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G114990	Melon (DHL92) v3.6.1	medwmbB442
Cla97C06G114990	Melon (DHL92) v3.5.1	mewmbB128
Cla97C06G114990	Melon (DHL92) v3.5.1	mewmbB448
Cla97C06G114990	Watermelon (Charleston Gray)	wcgwmbB238
Cla97C06G114990	Watermelon (97103) v1	wmwmbB217
Cla97C06G114990	Wax gourd	wgowmbB203