Cla009340 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009340
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 5910939 .. 5911856 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCTTCCAAAAACTACAGCCTTACATGTCTTGTTGCTGGGTGGCTAGGTCTTTTTTTTCTTTTTTTTTTTTTTTCCTTCCATCTTTTTCTTCTTCTTTCCTCTTCTCTAAAAAAACAAAAGGGATTTCATTGCTTGATGAAATAGAGGAGTAGAACTCAAACACCTATTGGTGAATTGCAACAAAGCTCTCCAATTGGAGATTAAATGAGGTATGATATAATGAACCGAAAGTTGTTTATTTTACTACGAAAGAAAGTATTAGATAAAACCCTGTCCATAAAGCAATCAAAAGGAGAGGACGTATCCTTGAAAAGGCAACCATTTCTCACCCCAAAGCAGTCAGAAAAAAGCATGAGCGAAAGCCAACCATAACACTTTTTTAGTACCACCAAAAGGATTACAGACCAAAATGGAAGCAAGAATGTCGAAAATGTTATTTGGGAACATTAAAGACCAGCCATAAGGCTCCAATATATTTCGCCAAAATCGGTATGCAGAGTGGCAAAGTAAAAATAAATGATCTGGATATTCAGCACTAGATCCACACATTATGCACCAGGAGGGGGTTAGATGAAAATAGGGTGCTGGCCGTTGCAACCTATTAGCAGCATTAATTCAATGGAACTTTTTGTTTCGGGTAAAAAATAATAATAATAATAATAAAGAAAGTACTGGTTTTAAGGAAGTACTGATTCAATCGCTCTATTTAAATCAGTTTCTTGTTTGATGGTCTGTTGATTGGTATATGACGTTCACTCTATTTTGGCTTTGCGTCCTACAGATGATAAAGTAACAGTTTTAGAGTCGGAGAAGCTGGCTTGGGAAAATTCTCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGACCAGGGAAGACACCTAA

mRNA sequence

ATGCATCCTTCCAAAAACTACAGCCTTACATGTCTTGTTGCTGGGTGGCTAGATGATAAAGTAACAGTTTTAGAGTCGGAGAAGCTGGCTTGGGAAAATTCTCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGACCAGGGAAGACACCTAA

Coding sequence (CDS)

ATGCATCCTTCCAAAAACTACAGCCTTACATGTCTTGTTGCTGGGTGGCTAGATGATAAAGTAACAGTTTTAGAGTCGGAGAAGCTGGCTTGGGAAAATTCTCCTGAGGCTCAAGCAATTAGAGAAGCCCTCAATCCTTGGAGAAACAGCGATGCTGCTGCAGAGACCAGGGAAGACACCTAA

Protein sequence

MHPSKNYSLTCLVAGWLDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETREDT

Homology

[Close]

BLAST of Cla009340 vs. TrEMBL
Match: A0A0A0K8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067430 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 19 DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETRED 60
          DKV V+ESE+LAWENSPEAQAIREALNPWRNSDAA E  ++
Sbjct: 32 DKVAVIESERLAWENSPEAQAIREALNPWRNSDAATEAGKE 72

[Close]

BLAST of Cla009340 vs. TrEMBL
Match: A0A0B0NMR0_GOSAR (DNA mismatch repair mutS OS=Gossypium arboreum GN=F383_18789 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.7e-10
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 17  LDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 53
           LDDKVTVLESEK AWENSPEAQA+REALNPWRN DA
Sbjct: 75  LDDKVTVLESEKRAWENSPEAQAMREALNPWRNHDA 110

[Close]

BLAST of Cla009340 vs. TrEMBL
Match: A0A0D2N8B4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056700 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-09
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 19 DKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 53
          DKVTVLESEK AWENSPEAQA+REALNPWRN DA
Sbjct: 34 DKVTVLESEKRAWENSPEAQAMREALNPWRNHDA 67

[Close]

BLAST of Cla009340 vs. TrEMBL
Match: M4CTY7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1


Query: 18 DDKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAA 55
          DDKVTVLE+EK A+ENSPEAQA+REALNPWRN DA A
Sbjct: 57 DDKVTVLEAEKRAYENSPEAQAVREALNPWRNKDAEA 93

[Close]

BLAST of Cla009340 vs. TrEMBL
Match: M5XHI7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017894mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-09
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 19 DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAA 55
          DKVTVLESEK AWENSPEAQAIR+ALNPW+N DA A
Sbjct: 32 DKVTVLESEKRAWENSPEAQAIRDALNPWKNRDAEA 67

[Close]

BLAST of Cla009340 vs. NCBI nr
Match: gi|700190981|gb|KGN46185.1| (hypothetical protein Csa_6G067430 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 19 DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAAETRED 60
          DKV V+ESE+LAWENSPEAQAIREALNPWRNSDAA E  ++
Sbjct: 32 DKVAVIESERLAWENSPEAQAIREALNPWRNSDAATEAGKE 72

[Close]

BLAST of Cla009340 vs. NCBI nr
Match: gi|728834509|gb|KHG13952.1| (DNA mismatch repair mutS [Gossypium arboreum])

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1


Query: 17  LDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 53
           LDDKVTVLESEK AWENSPEAQA+REALNPWRN DA
Sbjct: 75  LDDKVTVLESEKRAWENSPEAQAMREALNPWRNHDA 110

[Close]

BLAST of Cla009340 vs. NCBI nr
Match: gi|823164244|ref|XP_012482071.1| (PREDICTED: uncharacterized protein LOC105796803, partial [Gossypium raimondii])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 5  KNYSLTCL-VAGWLDDKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 53
          ++YS + L +    DDKVTVLESEK AWENSPEAQA+REALNPWRN DA
Sbjct: 48 RDYSCSILFLKATQDDKVTVLESEKRAWENSPEAQAMREALNPWRNHDA 96

[Close]

BLAST of Cla009340 vs. NCBI nr
Match: gi|596227740|ref|XP_007224225.1| (hypothetical protein PRUPE_ppa017894mg [Prunus persica])

HSP 1 Score: 67.4 bits (163), Expect = 9.7e-09
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1


Query: 19 DKVTVLESEKLAWENSPEAQAIREALNPWRNSDAAA 55
          DKVTVLESEK AWENSPEAQAIR+ALNPW+N DA A
Sbjct: 32 DKVTVLESEKRAWENSPEAQAIRDALNPWKNRDAEA 67

[Close]

BLAST of Cla009340 vs. NCBI nr
Match: gi|763761327|gb|KJB28581.1| (hypothetical protein B456_005G056700 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 9.7e-09
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 19 DKVTVLESEKLAWENSPEAQAIREALNPWRNSDA 53
          DKVTVLESEK AWENSPEAQA+REALNPWRN DA
Sbjct: 34 DKVTVLESEKRAWENSPEAQAMREALNPWRNHDA 67

The following BLAST results are available for this feature:

BLAST of Cla009340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V0_CUCSA	1.6e-10	80.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067430 PE=4 SV=1	[more]
A0A0B0NMR0_GOSAR	4.7e-10	91.67	DNA mismatch repair mutS OS=Gossypium arboreum GN=F383_18789 PE=4 SV=1	[more]
A0A0D2N8B4_GOSRA	6.8e-09	91.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056700 PE=4 SV=1	[more]
M4CTY7_BRARP	6.8e-09	83.78	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
M5XHI7_PRUPE	6.8e-09	86.11	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017894mg PE=4 SV=1	[more]

BLAST of Cla009340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190981\|gb\|KGN46185.1\|	2.3e-10	80.49	hypothetical protein Csa_6G067430 [Cucumis sativus]	[more]
gi\|728834509\|gb\|KHG13952.1\|	6.7e-10	91.67	DNA mismatch repair mutS [Gossypium arboreum]	[more]
gi\|823164244\|ref\|XP_012482071.1\|	1.5e-09	71.43	PREDICTED: uncharacterized protein LOC105796803, partial [Gossypium raimondii]	[more]
gi\|596227740\|ref\|XP_007224225.1\|	9.7e-09	86.11	hypothetical protein PRUPE_ppa017894mg [Prunus persica]	[more]
gi\|763761327\|gb\|KJB28581.1\|	9.7e-09	91.18	hypothetical protein B456_005G056700 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU29184	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU32467	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009340	Cla009340.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU29184	WMU29184	transcribed_cluster
WMU32467	WMU32467	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36377	FAMILY NOT NAMED	coord: 19..60 score: 5.3
None	No IPR available	PANTHER	PTHR36377:SF1	SUBFAMILY NOT NAMED	coord: 19..60 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009340	Cla97C06G114990	Watermelon (97103) v2	wmwmbB406
Cla009340	Csa6G067430	Cucumber (Chinese Long) v2	cuwmB545
Cla009340	ClCG06G005480	Watermelon (Charleston Gray)	wcgwmB344
Cla009340	CSPI06G05330	Wild cucumber (PI 183967)	cpiwmB564
Cla009340	Cucsa.363330	Cucumber (Gy14) v1	cgywmB665
Cla009340	CmaCh17G003000	Cucurbita maxima (Rimu)	cmawmB358
Cla009340	CmoCh17G002880	Cucurbita moschata (Rifu)	cmowmB353
Cla009340	Lsi09G013880	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla009340	Cp4.1LG12g02470	Cucurbita pepo (Zucchini)	cpewmB161
Cla009340	CsGy6G005290	Cucumber (Gy14) v2	cgybwmB510
Cla009340	Carg05481	Silver-seed gourd	carwmB0073
Cla009340	Bhi12G001564	Wax gourd	wgowmB094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009340	Cucumber (Chinese Long) v3	cucwmB288
Cla009340	Cucumber (Chinese Long) v3	cucwmB571
Cla009340	Watermelon (97103) v2	wmwmbB402
Cla009340	Wax gourd	wgowmB238
Cla009340	Watermelon (97103) v1	wmwmB138
Cla009340	Cucumber (Gy14) v1	cgywmB483
Cla009340	Cucurbita maxima (Rimu)	cmawmB250
Cla009340	Cucurbita maxima (Rimu)	cmawmB811
Cla009340	Cucurbita maxima (Rimu)	cmawmB878
Cla009340	Cucurbita moschata (Rifu)	cmowmB239
Cla009340	Cucurbita moschata (Rifu)	cmowmB802
Cla009340	Cucurbita moschata (Rifu)	cmowmB867
Cla009340	Melon (DHL92) v3.5.1	mewmB141
Cla009340	Melon (DHL92) v3.5.1	mewmB486
Cla009340	Watermelon (Charleston Gray)	wcgwmB311
Cla009340	Cucumber (Chinese Long) v2	cuwmB279
Cla009340	Cucurbita pepo (Zucchini)	cpewmB334
Cla009340	Cucurbita pepo (Zucchini)	cpewmB623
Cla009340	Cucurbita pepo (Zucchini)	cpewmB853
Cla009340	Bottle gourd (USVL1VR-Ls)	lsiwmB384
Cla009340	Cucumber (Gy14) v2	cgybwmB262
Cla009340	Melon (DHL92) v3.6.1	medwmB139
Cla009340	Melon (DHL92) v3.6.1	medwmB474
Cla009340	Silver-seed gourd	carwmB0317
Cla009340	Silver-seed gourd	carwmB0604
Cla009340	Silver-seed gourd	carwmB0835