Cp4.1LG12g02470 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g02470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA mismatch repair mutS
LocationCp4.1LG12 : 1679672 .. 1684021 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGGTTGTCGGTTGAGAACTTGAGAACGGAAAATAACAAATATTCTCTCTGAAGCGCTGGACGTCGCCGCTGTTAGCTCCATAGCTTGAGCTCTGTAAGTATCTCTGAAGCGTCGAGGCATGAACCACTCTTTTTTCTTTTGGAAAATTACAATGGATTCCGTTTTATAATCATGTTAATGCCTTTTGTTTTGGATTCTCAGTTGAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTGTGAGAACTCTCCTTCTTCTTCCTTATTCCTTAATTCACCATTTGAAATTCTTTTTCTTCACTGTATTTAGTTGATGTGCTTGTTGTAATGGCTTTTTCGTCTTCATTTAGGTCTGTCTTTCGATAAATCTTATAAAATTGATTCGCTACGAGGATCGGAGGTGTTTGGTTAATAGTTCTTTACAATTTTTTTATGCTTTATGTCTAAGTAGATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAGTAAGTAAGTGGTATTGAGTGGAAATTGTAACGAGCCACATGCTTCATGGGAATTCCCAACAGTTGTGGCAGCTGCTATTAATCTAACTGATAGTGATAAAACGTATTAGAATCCTGGATGTGCTTTCTTCAAATGTTTCATAGCTCTCCTAATTTAGTCTTTCTTCTTATTGTCTGAGTTGTTTCTACATGTTTCTTCATTTGCCTCTTATTCTTCTTGTCCAAGTTCCTTATTAAAACCATCTTCTCTCATTCAAAGAAGCGAAGGTGTCGACAACTTGAGCACACAACTCAATTGGTTAACACATTGAATTATCGACCAAAATGTCAAAAGGTTTGAATTCCTGCCCACATTGGTGTGTCATATCCATGAAAAATGCAGAAATTCCGAGCCAGCTCTTCATGACTTACCCCTTTGCCTATAGTTTATGGTCTTCATGAAAGGAAGCATTTGAATGGGCCATGACCCCAAGCTGCATTCATGACTTTCTTGCACTCATTATATTGGGCCACCCTTTCAGAGGAGAGAAGAACAAGTATACAAGCTAGCAGTCTCCCACTATCTTAAACAATTGGAAAACTTTCTTGTAGTTTTATTTATGGGAATGGGTTTAATAAATGTCATGTCATTTTTTATCTAAAAAAACGAAAAAGTTAGCAGCCTCCTAGATGAGCAAAACCACTAGAATCATCTGAAATCTTTCCCACTGATAAGAGGAGAGAAGATAAAAGACTTAAACCGCCACAACCCACCAAACAAACAAGCAAAATCAGCAAAGCCAGTTGAGAGTGGGACTCTTCAACCGGACTAGAACACCCATACCAAACCAACCAAGGCACTGGAGAACCTTAAACCTTGAGAGACAAACACTTTTCTTTTTTAATGGATTCTTAAATATAAGAAAGTACTGATTCATTGGTGCATGCACACGTTGAGATTGATTTAATTGTAAACACCGTGAATCAGACTGAGCCTCTTTCTTCGTCCTCTGTTTCATGAGAAAGGAAAAATTTTATTGCAAGCTGGGGCGTGTGCCATTGTTGGGGGTCTTTGAGAAGAAAGAAACAATAGTATTTTTAGAGGATATGAGAGACCTTTGAATGAGGTTGGGCCCTGTACTAGGCTCGATGTTTCCTTCTAGGCATTTGGGGCTAAACCTATTGTAATTATTTATTAGGTCTTGTTGGATTTGAGCCCGTTCTTGTAGGTTACCTCCCTTCTTTTTTGGGCTCGTCTTTTTTGTATGCTCTTGTATTCTTTCATTTTTCCTCAATGAATGTTCAGTTATTCATTAAGGAAAAATACTAGTTTTTTTTTTTAACAAGAAAGAAAGTACTACTTATGAGTAATAAGGAAGTACTGATTCAATCGCGCTCTTTTGAAGTCAGTTTCTTGTTTGATGGCCTGTTGATTGGTATATGATGTTGTCTCTATTTTGCCTTTGCATCATCAGATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCGGAGTAGCTGCTTTGCAAGGTTTGTTCATCATTCCATCCTTATAATCAGCCTAACTGAGGTTGAAATCATTTTTTGGTTTTTTTTTCCCACCCAAAATGGATGTCTGACATACTGTTTAAAAATTTAAAAACTGAGGTTGGGATCGGCATTTTGAAAATTCAACTGCTTGACAAAAGCTATTAGAAATCAAACGGAATGCACTGAAACCAACCAAAACCTTATCGAAAGTATACTGATTAGATTTCTGCTTTATACCTTAGAAAACCAAACATTGCTGAAACAATGGAACCCACTAACAGTTAGAAATCACAACTCCCCACAATAGTATGATATTGTCCACTTTGAGCATATGCTCTCATGGCTTTGTTTTTGGTTTCCCCAAAAGGCCTCGTACCAATGGAGATGTATTCCTTACTTATAAACCTATGATCAACCCCTTAATGAGCCAATATGGGACTCCTCTCCCAACAATCCCCAACAATCCCCAACAATCCTCCTTTCGAACAAAGTACACCATAAAGCCTCCATTGAAGCCTATTGGAGCCCTCAAACAACCTCCCCTTAATCGAGGCTCGACTCCTTCTCTGGAGCCCTCGAACAAAGTACACCATTTGTTTGAAACTTGAGTCACTTTTGACTACATCTTCGAGACTCACAATTTCTTTGTTACGACATTTAAGGATTCTATTGACATGGCGGTTCAATTAGTTTTTTTATAGTTTTTTTAGGTTTTTTTTTCTTTCTATTCTAAGGGCCCCTATGCCTTGACTCGATATTCGAGTGAGCTTGTTTGATTGCCTGGTTTCTTATACAGAAAAACCACGAACTTTTTAAAACAAACAAACAATGCCAATGTTGTAGCAGGAAAATCAAAATGTACTAATCAAGATTCAAAGTGGGATCAANCCCCCCCTTTTTATAGGAAACTTAGAAATATATATCACTTCAAGGAAGAAGATGAGAGAACAACTTAGGATCCAGGAGTAAATGTGTGAAAAGTTAGTGCAAACTTAAATTAATTTTCATTAGTCATTTTTGACTTATTAGAAATGAATGTTAGCTGCACTTATGGCTTGTAATTAGGAAAGATGTTAGTTGCACTTATGGTCCATAGGTCGGTCTAGTGATCATTGGAGGAAGTAATGGAAGCACGATGATTATAAAAAAATGAGATCAAATCCCATAAACCTACCTAAGATATCACAAACAGGTGAGTTCTTTTATTACCAAATTTTGCTAGGTCAGGTAGTCAATATACATAGTCTAGTTCAAACGCGCACAAATTTTTTATAATCTCTTATAAAATGCTAAGTAACTGTTGCATTTGAAACAACTCTGACCCATCAAAACTTCTTAATGGAACCAACTGTGTGAAGGAAACAACTGTTAAATTCGCGTCCCATGAGATTAGTCAAGATGCACGTAACTAGGTTTAAGAAAGACATTTGAAAACAAAAACTACTCATTAAAGCTCTGGTTGAACAAAATTTCTTCCTAACTCTCAATTTAGCCTTCCAAACCATGTTGATTTCTTTCTAAGTCTAACCATAAGCCCCAAACGAAGACTCTGACCTTGTTGATCCATAAGACTTTATCCTGCATCCACATAGAAGACTATCCCATGAACAACCAAATCACTGTAACACTGCCTCCAAAATTTTTCTAATGAATGAACAATGAAAGAACAAATTGTGGCTTTAGGATATTCGAACTTCAAACGAACATACTTATCATGATCCTACCATTGTTTTTAAGACATGAACCGACACTCTGTTTGTTTACATCGGTATACAAGAACTCTCTTCTTACAAAAACCCTCATTGCCACAGTATTTAGCGGTTTCTTCTTGTTGGTTTTGCAGGTTGAGAACGAAATTACAGGGGAGTAGGAGATACGAGCTCAGGCTTTTAAGTTTCACCTAATAAGATGGGGGATTTTAGTAAGCTGTTTCTTTATGACATTTGAGGTCTTCTTATGATTGATTCCATATTAAAGTTGAATGATAACACCAAACCAAAGGTCTGATAATTCAATTCATTAACAATCTCTTATGGTAGAAATGACAGATTTTCATATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGACTGTCATTCTGATTCAACTTAACTCATCATGCCTTCTGGAATATA

mRNA sequence

GATGGTTGTCGGTTGAGAACTTGAGAACGGAAAATAACAAATATTCTCTCTGAAGCGCTGGACGTCGCCGCTGTTAGCTCCATAGCTTGAGCTCTTTGAAATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAATGCTTCAACTGTTGACCGGAGTAGCTGCTTTGCAAGGTTGAGAACGAAATTACAGGGGAGTAGGAGATACGAGCTCAGGCTTTTAAGTTTCACCTAATAAGATGGGGGATTTTAGTAAGCTGTTTCTTTATGACATTTGAGGTCTTCTTATGATTGATTCCATATTAAAGTTGAATGATAACACCAAACCAAAGGTCTGATAATTCAATTCATTAACAATCTCTTATGGTAGAAATGACAGATTTTCATATAGTCTGATACCCATATTAGAGTTGAATCATAATCCCATATTCAGGACTGTCATTCTGATTCAACTTAACTCATCATGCCTTCTGGAATATA

Coding sequence (CDS)

ATGAAGTTTCTAGGTTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGCTTCCATGGAAATGTTCATGATTAAAACGGGCTTCTGTATTGAAGAAATCTTGCTTTTCAATGAATGTCCACTAACGTTAGATTTTTCGTGTTCGAGACCACGAAATGATAAAGTAACAGTTTTGGAATCGGAGAAGATAGCTTGGGAAAACTCGCCTGAGGCTCAAGCAATTAGAGAAGCCCTTAATCCTTGGAGGAATCACGATGCTGCTGAAGAGGCCAGGAAAGACACCTAA

Protein sequence

MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT
Homology
[Close]
BLAST of Cp4.1LG12g02470 vs. TrEMBL
Match: A0A0A0K8V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067430 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-21
Identity = 59/95 (62.11%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFL WYVKIGTVSALIG SME+FMIK+GF                        DKV V+
Sbjct: 1  MKFLDWYVKIGTVSALIGGSMELFMIKSGFY-----------------------DKVAVI 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKD 96
          ESE++AWENSPEAQAIREALNPWRN DAA EA K+
Sbjct: 61 ESERLAWENSPEAQAIREALNPWRNSDAATEAGKE 72

[Close]
BLAST of Cp4.1LG12g02470 vs. TrEMBL
Match: A0A0B0NMR0_GOSAR (DNA mismatch repair mutS OS=Gossypium arboreum GN=F383_18789 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = 1 

Query: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCS---------- 60
           +KFL WY+KI   SA+IG SME+FMIKTGFCI   LL +   LT     S          
Sbjct: 3   IKFLDWYLKIAIGSAIIGGSMELFMIKTGFCIWFELLSSI--LTNQHKGSWIRYLTRLRK 62

Query: 61  ------------RPRNDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAE 91
                       +P +DKVTVLESEK AWENSPEAQA+REALNPWRNHDA E
Sbjct: 63  HKGSTLASKWLYKPLDDKVTVLESEKRAWENSPEAQAMREALNPWRNHDAQE 112

[Close]
BLAST of Cp4.1LG12g02470 vs. TrEMBL
Match: A0A151U461_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_006780 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 59/94 (62.77%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFL WY+KIG VSAL+GASMEMFMIKTGF                        DKVTVL
Sbjct: 1  MKFLDWYLKIGVVSALVGASMEMFMIKTGF-----------------------YDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARK 95
          ESEK AWENSP+AQAIREALNPWR+ D AEE +K
Sbjct: 61 ESEKRAWENSPDAQAIREALNPWRHID-AEETKK 70

[Close]
BLAST of Cp4.1LG12g02470 vs. TrEMBL
Match: M5XHI7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017894mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.9e-19
Identity = 59/96 (61.46%), Postives = 63/96 (65.62%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFL WYVKI   SALIGASME FMIKTGF                        DKVTVL
Sbjct: 1  MKFLDWYVKIALGSALIGASMEFFMIKTGF-----------------------YDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKDT 97
          ESEK AWENSPEAQAIR+ALNPW+N DA  EARK++
Sbjct: 61 ESEKRAWENSPEAQAIRDALNPWKNRDA--EARKES 71

[Close]
BLAST of Cp4.1LG12g02470 vs. TrEMBL
Match: A0A0D2N8B4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056700 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.9e-19
Identity = 55/90 (61.11%), Postives = 59/90 (65.56%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFL WY+KI   SA+IG SME+FMIKTGF                        DKVTVL
Sbjct: 3  MKFLDWYLKIAIGSAIIGGSMELFMIKTGF-----------------------YDKVTVL 62

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAE 91
          ESEK AWENSPEAQA+REALNPWRNHDA E
Sbjct: 63 ESEKRAWENSPEAQAMREALNPWRNHDAQE 69

[Close]
BLAST of Cp4.1LG12g02470 vs. TAIR10
Match: AT3G62450.1 (AT3G62450.1 unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 5.7e-17
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 2  KFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVLE 61
          +FL WY+KI   SA+IG  ME FMIKTGF                        DKVTV+E
Sbjct: 5  RFLDWYLKIAIGSAIIGGGMEFFMIKTGFY-----------------------DKVTVIE 64

Query: 62 SEKIAWENSPEAQAIREALNPWRNHDA 89
          +E+ A ENSPEAQAIREALNPWRN DA
Sbjct: 65 AERRALENSPEAQAIREALNPWRNKDA 68

[Close]
BLAST of Cp4.1LG12g02470 vs. NCBI nr
Match: gi|700190981|gb|KGN46185.1| (hypothetical protein Csa_6G067430 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 8.0e-21
Identity = 59/95 (62.11%), Postives = 65/95 (68.42%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFL WYVKIGTVSALIG SME+FMIK+GF                        DKV V+
Sbjct: 1  MKFLDWYVKIGTVSALIGGSMELFMIKSGFY-----------------------DKVAVI 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARKD 96
          ESE++AWENSPEAQAIREALNPWRN DAA EA K+
Sbjct: 61 ESERLAWENSPEAQAIREALNPWRNSDAATEAGKE 72

[Close]
BLAST of Cp4.1LG12g02470 vs. NCBI nr
Match: gi|728834509|gb|KHG13952.1| (DNA mismatch repair mutS [Gossypium arboreum])

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = 1 

Query: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCS---------- 60
           +KFL WY+KI   SA+IG SME+FMIKTGFCI   LL +   LT     S          
Sbjct: 3   IKFLDWYLKIAIGSAIIGGSMELFMIKTGFCIWFELLSSI--LTNQHKGSWIRYLTRLRK 62

Query: 61  ------------RPRNDKVTVLESEKIAWENSPEAQAIREALNPWRNHDAAE 91
                       +P +DKVTVLESEK AWENSPEAQA+REALNPWRNHDA E
Sbjct: 63  HKGSTLASKWLYKPLDDKVTVLESEKRAWENSPEAQAMREALNPWRNHDAQE 112

[Close]
BLAST of Cp4.1LG12g02470 vs. NCBI nr
Match: gi|1012017210|ref|XP_015949225.1| (PREDICTED: uncharacterized protein LOC107474142 isoform X1 [Arachis duranensis])

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-19
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIE------EILLFNECPLT-LDFSCSRPR 60
          MKFL WY+KIG VSAL+GASME+FMIKTGF  E       +L+      T ++       
Sbjct: 1  MKFLDWYLKIGVVSALVGASMELFMIKTGFLGEGTWRDKRLLVAPRMAWTWVELRGKNWN 60

Query: 61 NDKVTVLESEKIAWENSPEAQAIREALNPWRNHDA 89
          NDKVTVLESEK AWENSPEAQA+R+ALNPWR+ +A
Sbjct: 61 NDKVTVLESEKRAWENSPEAQAVRDALNPWRHVEA 95

[Close]
BLAST of Cp4.1LG12g02470 vs. NCBI nr
Match: gi|1012017215|ref|XP_015949226.1| (PREDICTED: uncharacterized protein LOC107474142 isoform X2 [Arachis duranensis])

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-19
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIE------EILLFNECPLT-LDFSCSRPR 60
          MKFL WY+KIG VSAL+GASME+FMIKTGF  E       +L+      T ++       
Sbjct: 1  MKFLDWYLKIGVVSALVGASMELFMIKTGFLGEGTWRDKRLLVAPRMAWTWVELRGKNWN 60

Query: 61 NDKVTVLESEKIAWENSPEAQAIREALNPWRNHDA 89
          NDKVTVLESEK AWENSPEAQA+R+ALNPWR+ +A
Sbjct: 61 NDKVTVLESEKRAWENSPEAQAVRDALNPWRHVEA 95

[Close]
BLAST of Cp4.1LG12g02470 vs. NCBI nr
Match: gi|1012362929|gb|KYP74112.1| (hypothetical protein KK1_006780 [Cajanus cajan])

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 59/94 (62.77%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 1  MKFLGWYVKIGTVSALIGASMEMFMIKTGFCIEEILLFNECPLTLDFSCSRPRNDKVTVL 60
          MKFL WY+KIG VSAL+GASMEMFMIKTGF                        DKVTVL
Sbjct: 1  MKFLDWYLKIGVVSALVGASMEMFMIKTGF-----------------------YDKVTVL 60

Query: 61 ESEKIAWENSPEAQAIREALNPWRNHDAAEEARK 95
          ESEK AWENSP+AQAIREALNPWR+ D AEE +K
Sbjct: 61 ESEKRAWENSPDAQAIREALNPWRHID-AEETKK 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8V0_CUCSA5.5e-2162.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067430 PE=4 SV=1[more]
A0A0B0NMR0_GOSAR1.0e-1955.36DNA mismatch repair mutS OS=Gossypium arboreum GN=F383_18789 PE=4 SV=1[more]
A0A151U461_CAJCA2.3e-1962.77Uncharacterized protein OS=Cajanus cajan GN=KK1_006780 PE=4 SV=1[more]
M5XHI7_PRUPE8.9e-1961.46Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017894mg PE=4 SV=1[more]
A0A0D2N8B4_GOSRA8.9e-1961.11Uncharacterized protein OS=Gossypium raimondii GN=B456_005G056700 PE=4 SV=1[more]
BLAST of Cp4.1LG12g02470 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G62450.15.7e-1754.02 unknown protein[more]
BLAST of Cp4.1LG12g02470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190981|gb|KGN46185.1|8.0e-2162.11hypothetical protein Csa_6G067430 [Cucumis sativus][more]
gi|728834509|gb|KHG13952.1|1.5e-1955.36DNA mismatch repair mutS [Gossypium arboreum][more]
gi|1012017210|ref|XP_015949225.1|2.0e-1960.00PREDICTED: uncharacterized protein LOC107474142 isoform X1 [Arachis duranensis][more]
gi|1012017215|ref|XP_015949226.1|2.0e-1960.00PREDICTED: uncharacterized protein LOC107474142 isoform X2 [Arachis duranensis][more]
gi|1012362929|gb|KYP74112.1|3.3e-1962.77hypothetical protein KK1_006780 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02470.1Cp4.1LG12g02470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36377FAMILY NOT NAMEDcoord: 53..96
score: 3.6E-41coord: 1..29
score: 3.6
NoneNo IPR availablePANTHERPTHR36377:SF1SUBFAMILY NOT NAMEDcoord: 53..96
score: 3.6E-41coord: 1..29
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g02470Cucsa.363330Cucumber (Gy14) v1cgycpeB0948
Cp4.1LG12g02470CmaCh17G003000Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g02470CmoCh17G002880Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g02470Cla009340Watermelon (97103) v1cpewmB161
Cp4.1LG12g02470Csa6G067430Cucumber (Chinese Long) v2cpecuB144
Cp4.1LG12g02470ClCG06G005480Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g02470CSPI06G05330Wild cucumber (PI 183967)cpecpiB146
Cp4.1LG12g02470Lsi09G013880Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g02470MELO3C035183.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g02470Bhi12G001564Wax gourdcpewgoB0180
Cp4.1LG12g02470CsGy6G005290Cucumber (Gy14) v2cgybcpeB724
Cp4.1LG12g02470Carg05481Silver-seed gourdcarcpeB0099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g02470Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG12g02470Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g02470Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g02470Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g02470Cucurbita maxima (Rimu)cmacpeB262
Cp4.1LG12g02470Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g02470Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g02470Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g02470Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g02470Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g02470Wild cucumber (PI 183967)cpecpiB155
Cp4.1LG12g02470Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g02470Cucumber (Chinese Long) v2cpecuB153
Cp4.1LG12g02470Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g02470Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g02470Watermelon (97103) v1cpewmB152
Cp4.1LG12g02470Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g02470Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g02470Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g02470Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g02470Silver-seed gourdcarcpeB0450
Cp4.1LG12g02470Silver-seed gourdcarcpeB0857
Cp4.1LG12g02470Silver-seed gourdcarcpeB1163
Cp4.1LG12g02470Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g02470Cucumber (Chinese Long) v3cpecucB0168
Cp4.1LG12g02470Wax gourdcpewgoB0188