CmaCh16G001970 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G001970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 890799 .. 891252 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTACGTTTATCCTTGCTTTTTATACTCAAATGATTATGATGTTGCTATCCAAGCTTGGTGCTGCCCGATGGGTTGATATTGATTTTAATATCCATTCTCTATGCAGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGAACTTTGAGATTCTCTATACAATTTCCCTTTATCAGTTTCATTATCATCGAATCGAATAAATATAGTTTTTACTCAAATCATTTGTGATTCACTACCTATTTGTATAAAACATCTAATGTGATTATTATTTATAAGAAATAGTCTTATTGTAACAGCTCC

mRNA sequence

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGAACTTTGAGATTCTCTATACAATTTCCCTTTATCAGTTTCATTATCATCGAATCGAATAAATATAGTTTTTACTCAAATCATTTGTGATTCACTACCTATTTGTATAAAACATCTAATGTGATTATTATTTATAAGAAATAGTCTTATTGTAACAGCTCC

Coding sequence (CDS)

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGA

Protein sequence

MASNMASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY

Homology

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BLAST of CmaCh16G001970 vs. TrEMBL
Match: A0A0A0KUB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 5  MASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          MAS+ WKKLLSIVRLI PS  NAKRLSST DIDGMK K+ PPRP D+ + AAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

[Close]

BLAST of CmaCh16G001970 vs. NCBI nr
Match: gi|700197980|gb|KGN53138.1| (hypothetical protein Csa_4G022250 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 5  MASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          MAS+ WKKLLSIVRLI PS  NAKRLSST DIDGMK K+ PPRP D+ + AAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

The following BLAST results are available for this feature:

BLAST of CmaCh16G001970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G001970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB7_CUCSA	2.5e-14	75.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1	[more]

BLAST of CmaCh16G001970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G001970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197980\|gb\|KGN53138.1\|	3.6e-14	75.86	hypothetical protein Csa_4G022250 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001970.1	CmaCh16G001970.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G001970	Csa4G022250	Cucumber (Chinese Long) v2	cmacuB332
CmaCh16G001970	ClCG07G016790	Watermelon (Charleston Gray)	cmawcgB302
CmaCh16G001970	CSPI04G03900	Wild cucumber (PI 183967)	cmacpiB337
CmaCh16G001970	Cp4.1LG14g05570	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G001970	CsaV3_4G003950	Cucumber (Chinese Long) v3	cmacucB0387
CmaCh16G001970	Bhi01G002016	Wax gourd	cmawgoB0434

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G001970	Cucumber (Gy14) v2	cgybcmaB493
CmaCh16G001970	Silver-seed gourd	carcmaB0526
CmaCh16G001970	Silver-seed gourd	carcmaB1206
CmaCh16G001970	Watermelon (97103) v2	cmawmbB352
CmaCh16G001970	Cucurbita maxima (Rimu)	cmacmaB345
CmaCh16G001970	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G001970	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G001970	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G001970	Cucurbita pepo (Zucchini)	cmacpeB342
CmaCh16G001970	Cucurbita pepo (Zucchini)	cmacpeB351