Cp4.1LG14g05570 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g05570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 921420 .. 921704 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAACATGGCTTCAAATGTATGGAAGAAAGTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAAATTGAATTCCACACCGGGTATTGATGGTACGTTTATCCTTACTTTTGATACTCAAATCATTATGATGCTGCTATCCAAGCTTGGTGGGTTGATATTGATTTCAATGTCCATTCTCTATGTAGGTATGAACAAAAAGAGGCCTCCTCGTGGTCCATCTGATGACCCTGGATATGCTGCTCCTCGGAATGGCAACTATTGA

mRNA sequence

ATGGCTTCCAACATGGCTTCAAATGTATGGAAGAAAGTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAAATTGAATTCCACACCGGGTATTGATGGTACGTTTATCCTTACTTTTGATACTCAAATCATTATGATGCTGCTATCCAAGCTTGGTGGGTTGATATTGATTTCAATGTCCATTCTCTATGTAGGTATGAACAAAAAGAGGCCTCCTCGTGGTCCATCTGATGACCCTGGATATGCTGCTCCTCGGAATGGCAACTATTGA

Coding sequence (CDS)

ATGGCTTCCAACATGGCTTCAAATGTATGGAAGAAAGTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAAATTGAATTCCACACCGGGTATTGATGGTACGTTTATCCTTACTTTTGATACTCAAATCATTATGATGCTGCTATCCAAGCTTGGTGGGTTGATATTGATTTCAATGTCCATTCTCTATGTAGGTATGAACAAAAAGAGGCCTCCTCGTGGTCCATCTGATGACCCTGGATATGCTGCTCCTCGGAATGGCAACTATTGA

Protein sequence

MASNMASNVWKKVLSIVRLIFPSNVNAKKLNSTPGIDGTFILTFDTQIIMMLLSKLGGLILISMSILYVGMNKKRPPRGPSDDPGYAAPRNGNY
Homology
[Close]
BLAST of Cp4.1LG14g05570 vs. TrEMBL
Match: A0A0A0KUB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 39/90 (43.33%), Postives = 44/90 (48.89%), Query Frame = 1 

Query: 5  MASNVWKKVLSIVRLIFPSNVNAKKLNSTPGIDGTFILTFDTQIIMMLLSKLGGLILISM 64
          MAS VWKK+LSIVRLI PS  NAK+L+ST  IDG                          
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDG-------------------------- 58

Query: 65 SILYVGMNKKRPPRGPSDDPGYAAPRNGNY 95
                M KK+ P  P D+   AAPRNGNY
Sbjct: 61 ------MKKKKFPPRPFDEESSAAPRNGNY 58

[Close]
BLAST of Cp4.1LG14g05570 vs. NCBI nr
Match: gi|700197980|gb|KGN53138.1| (hypothetical protein Csa_4G022250 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 39/90 (43.33%), Postives = 44/90 (48.89%), Query Frame = 1 

Query: 5  MASNVWKKVLSIVRLIFPSNVNAKKLNSTPGIDGTFILTFDTQIIMMLLSKLGGLILISM 64
          MAS VWKK+LSIVRLI PS  NAK+L+ST  IDG                          
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDG-------------------------- 58

Query: 65 SILYVGMNKKRPPRGPSDDPGYAAPRNGNY 95
                M KK+ P  P D+   AAPRNGNY
Sbjct: 61 ------MKKKKFPPRPFDEESSAAPRNGNY 58

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB7_CUCSA1.7e-0643.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1[more]
BLAST of Cp4.1LG14g05570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197980|gb|KGN53138.1|2.4e-0643.33hypothetical protein Csa_4G022250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05570.1Cp4.1LG14g05570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g05570CmaCh16G001970Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g05570Bhi01G002016Wax gourdcpewgoB0291
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g05570Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g05570Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG14g05570Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g05570Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g05570Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g05570Silver-seed gourdcarcpeB0523
Cp4.1LG14g05570Silver-seed gourdcarcpeB0998
Cp4.1LG14g05570Silver-seed gourdcarcpeB1215