Cp4.1LG14g05570.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g05570.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG14 : 921420 .. 921704 (+)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAACATGGCTTCAAATGTATGGAAGAAAGTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAAATTGAATTCCACACCGGGTATTGATGGTACGTTTATCCTTACTTTTGATACTCAAATCATTATGATGCTGCTATCCAAGCTTGGTGGGTTGATATTGATTTCAATGTCCATTCTCTATGTAGGTATGAACAAAAAGAGGCCTCCTCGTGGTCCATCTGATGACCCTGGATATGCTGCTCCTCGGAATGGCAACTATTGA

mRNA sequence

ATGGCTTCCAACATGGCTTCAAATGTATGGAAGAAAGTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAAATTGAATTCCACACCGGGTATTGATGGTACGTTTATCCTTACTTTTGATACTCAAATCATTATGATGCTGCTATCCAAGCTTGGTGGGTTGATATTGATTTCAATGTCCATTCTCTATGTAGGTATGAACAAAAAGAGGCCTCCTCGTGGTCCATCTGATGACCCTGGATATGCTGCTCCTCGGAATGGCAACTATTGA

Coding sequence (CDS)

ATGGCTTCCAACATGGCTTCAAATGTATGGAAGAAAGTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAAATTGAATTCCACACCGGGTATTGATGGTACGTTTATCCTTACTTTTGATACTCAAATCATTATGATGCTGCTATCCAAGCTTGGTGGGTTGATATTGATTTCAATGTCCATTCTCTATGTAGGTATGAACAAAAAGAGGCCTCCTCGTGGTCCATCTGATGACCCTGGATATGCTGCTCCTCGGAATGGCAACTATTGA

Protein sequence

MASNMASNVWKKVLSIVRLIFPSNVNAKKLNSTPGIDGTFILTFDTQIIMMLLSKLGGLILISMSILYVGMNKKRPPRGPSDDPGYAAPRNGNY

Homology

[Close]

BLAST of Cp4.1LG14g05570.1 vs. TrEMBL
Match: A0A0A0KUB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 39/90 (43.33%), Postives = 44/90 (48.89%), Query Frame = 1


Query: 5  MASNVWKKVLSIVRLIFPSNVNAKKLNSTPGIDGTFILTFDTQIIMMLLSKLGGLILISM 64
          MAS VWKK+LSIVRLI PS  NAK+L+ST  IDG                          
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDG-------------------------- 58

Query: 65 SILYVGMNKKRPPRGPSDDPGYAAPRNGNY 95
                M KK+ P  P D+   AAPRNGNY
Sbjct: 61 ------MKKKKFPPRPFDEESSAAPRNGNY 58

[Close]

BLAST of Cp4.1LG14g05570.1 vs. NCBI nr
Match: gi|700197980|gb|KGN53138.1| (hypothetical protein Csa_4G022250 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 39/90 (43.33%), Postives = 44/90 (48.89%), Query Frame = 1


Query: 5  MASNVWKKVLSIVRLIFPSNVNAKKLNSTPGIDGTFILTFDTQIIMMLLSKLGGLILISM 64
          MAS VWKK+LSIVRLI PS  NAK+L+ST  IDG                          
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDG-------------------------- 58

Query: 65 SILYVGMNKKRPPRGPSDDPGYAAPRNGNY 95
                M KK+ P  P D+   AAPRNGNY
Sbjct: 61 ------MKKKKFPPRPFDEESSAAPRNGNY 58

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05570.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05570.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB7_CUCSA	1.7e-06	43.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g05570.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197980\|gb\|KGN53138.1\|	2.4e-06	43.33	hypothetical protein Csa_4G022250 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG14g05570	Cp4.1LG14g05570	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g05570.1:cds:001	Cp4.1LG14g05570.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG14g05570.1	Cp4.1LG14g05570.1-protein	polypeptide