CSPI04G03900 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G03900
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 2438210 .. 2438894 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATAATCTCTTCCATAATATACATATTTCAACGATATCTCTTTCATTTGTCTACCCAAAACCAAAATTTGATTCAAAGATGGCTTCTGTTGTTTGGAAGAAACTCTTGTCAATTGTTAGACTCATTGTTCCTTCCAAAACAAATGCAAAGAGATTGAGTTCCACAAACGATATTGATGGTAGGTCGTAATTTCTTTGAAACTTTGTTTAAATATTATTCGTATCATTTTAAATAGGTATGCTTTTGTACCGTTCGTTCATGTTTGTTTCTCACACACTCAATAATAAAAGTGTCGTTTTTTTTCAAAAGAATATTTTAACTAAAAATATTGAAATAACAAACATTCATGTATATATTTAGTATACATTAAAGTTGGAGAGTTTAAACTTGAATCCTTTTGTTCTTAAGTATATAGAGGTGCATGCTAGTATATATGGAGCATTTAATTTATTTTGATTTTGGCTTTCTTTCATTTTCTAAATGTGTATAGGTATGAAGAAAAAGAAGTTTCCTCCTCGTCCATTTGATGAAGAAAGTTCTGCTGCTCCTCGCAATGGGAACTATTGATTCTTAAATTGTATATACAATTTTCCCTTATCATTTTTATTATCATGAAATAATTATACCTGTTGTTTTTTAATTTTCAATCTTTTATACCAAAGAATATATATATATCAATTCTAG

mRNA sequence

ATGGCTTCTGTTGTTTGGAAGAAACTCTTGTCAATTGTTAGACTCATTGTTCCTTCCAAAACAAATGCAAAGAGATTGAGTTCCACAAACGATATTGATGGTATGAAGAAAAAGAAGTTTCCTCCTCGTCCATTTGATGAAGAAAGTTCTGCTGCTCCTCGCAATGGGAACTATTGA

Coding sequence (CDS)

ATGGCTTCTGTTGTTTGGAAGAAACTCTTGTCAATTGTTAGACTCATTGTTCCTTCCAAAACAAATGCAAAGAGATTGAGTTCCACAAACGATATTGATGGTATGAAGAAAAAGAAGTTTCCTCCTCGTCCATTTGATGAAGAAAGTTCTGCTGCTCCTCGCAATGGGAACTATTGA
Homology
[Close]
BLAST of CSPI04G03900 vs. TrEMBL
Match: A0A0A0KUB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-23
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 1  MASVVWKKLLSIVRLIVPSKTNAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 59
          MASVVWKKLLSIVRLIVPSK NAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

[Close]
BLAST of CSPI04G03900 vs. NCBI nr
Match: gi|700197980|gb|KGN53138.1| (hypothetical protein Csa_4G022250 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.9e-23
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 1  MASVVWKKLLSIVRLIVPSKTNAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 59
          MASVVWKKLLSIVRLIVPSK NAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

The following BLAST results are available for this feature:
BLAST of CSPI04G03900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G03900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB7_CUCSA6.2e-2398.28Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1[more]
BLAST of CSPI04G03900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G03900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197980|gb|KGN53138.1|8.9e-2398.28hypothetical protein Csa_4G022250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03900.1CSPI04G03900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G03900Csa4G022250Cucumber (Chinese Long) v2cpicuB182
CSPI04G03900ClCG07G016790Watermelon (Charleston Gray)cpiwcgB336
CSPI04G03900MELO3C032838.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G03900CsaV3_4G003950Cucumber (Chinese Long) v3cpicucB213
CSPI04G03900Bhi01G002016Wax gourdcpiwgoB370
CSPI04G03900CmaCh16G001970Cucurbita maxima (Rimu)cmacpiB337
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G03900Cucurbita moschata (Rifu)cmocpiB328
CSPI04G03900Cucurbita moschata (Rifu)cmocpiB708
CSPI04G03900Melon (DHL92) v3.5.1cpimeB310
CSPI04G03900Watermelon (97103) v1cpiwmB315
CSPI04G03900Cucurbita pepo (Zucchini)cpecpiB398
CSPI04G03900Bottle gourd (USVL1VR-Ls)cpilsiB303
CSPI04G03900Cucumber (Gy14) v2cgybcpiB168
CSPI04G03900Watermelon (97103) v2cpiwmbB326
CSPI04G03900Cucumber (Gy14) v1cgycpiB103
CSPI04G03900Cucurbita maxima (Rimu)cmacpiB716