CmaCh16G001970.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G001970.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 890799 .. 891252 (+)
Sequence length	348

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTACGTTTATCCTTGCTTTTTATACTCAAATGATTATGATGTTGCTATCCAAGCTTGGTGCTGCCCGATGGGTTGATATTGATTTTAATATCCATTCTCTATGCAGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGAACTTTGAGATTCTCTATACAATTTCCCTTTATCAGTTTCATTATCATCGAATCGAATAAATATAGTTTTTACTCAAATCATTTGTGATTCACTACCTATTTGTATAAAACATCTAATGTGATTATTATTTATAAGAAATAGTCTTATTGTAACAGCTCC

mRNA sequence

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGAACTTTGAGATTCTCTATACAATTTCCCTTTATCAGTTTCATTATCATCGAATCGAATAAATATAGTTTTTACTCAAATCATTTGTGATTCACTACCTATTTGTATAAAACATCTAATGTGATTATTATTTATAAGAAATAGTCTTATTGTAACAGCTCC

Coding sequence (CDS)

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGA

Protein sequence

MASNMASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY

Homology

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BLAST of CmaCh16G001970.1 vs. TrEMBL
Match: A0A0A0KUB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 5  MASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          MAS+ WKKLLSIVRLI PS  NAKRLSST DIDGMK K+ PPRP D+ + AAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

[Close]

BLAST of CmaCh16G001970.1 vs. NCBI nr
Match: gi|700197980|gb|KGN53138.1| (hypothetical protein Csa_4G022250 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1


Query: 5  MASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          MAS+ WKKLLSIVRLI PS  NAKRLSST DIDGMK K+ PPRP D+ + AAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

The following BLAST results are available for this feature:

BLAST of CmaCh16G001970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G001970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB7_CUCSA	2.5e-14	75.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022250 PE=4 SV=1	[more]

BLAST of CmaCh16G001970.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G001970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197980\|gb\|KGN53138.1\|	3.6e-14	75.86	hypothetical protein Csa_4G022250 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh16G001970	CmaCh16G001970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh16G001970.1	CmaCh16G001970.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G001970.1.exon.1	CmaCh16G001970.1.exon.1	exon
CmaCh16G001970.1.exon.2	CmaCh16G001970.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G001970.1.CDS.1	CmaCh16G001970.1.CDS.1	CDS
CmaCh16G001970.1.CDS.2	CmaCh16G001970.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh16G001970.1.three_prime_UTR.1	CmaCh16G001970.1.three_prime_UTR.1	three_prime_UTR