CmaCh16G001240 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G001240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cellular nucleic acid-binding protein
Location	Cma_Chr16 : 569503 .. 572178 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCCAAAGGCAAAGACTTGCCCGGAAAAAGTACAGAGAAGAACACCCGGAACTGTTTCCGGAAGCAGAGCCAACGCCACCTAAAGACCCCGACAAGAAGAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGCAGAATCGAACTCAACCAGCGACCCAAATAAACCCCACAAGAAGAGTTTTAAGAAACACCCTCTTAGAGTGACTGGGATGAAACCTGGAGAAAGCTGCTTCATCTGCAAAGCCAAAGACCACATTGCTAAGCTTTGCCCCGAAAAGGCTCAATGGGAGAAGAACAAGGTTTGTTTTTCCGTTAAACTCTTCCGTGTTTCTGGTGTTTCACTGTTCACCGAGTTTATGGAAATCTTGCTCATAGAATAGGGTTCCCTTTCCAAAGCTATCACTGTAATGAATGTGGTGTCCGTGACATTGGTTAGGATTGGATTTTCCTCTCCTATTTGATGCAAACTTCTTAGCTTAGTTATGCCTATGCTAAGGCTTCTTCCATCAACTATTGTCACTTTGTGATGATAATCTTGTGGGAAAGTGGAAGGTTTGGAATGAATGAACGGTTAGGAATTATGGATCTCACCATGGAATCTTATGGGTTTGCTTTATGCTTCCCAAAAGGTCTCACATTCATAGTATTCCCCACTTCCACTAAATTATTTAATGTGGCACTCACTCTCAATAATCCTCAACAATTCTCCCCTCGAATAAACTACACTCATTATTCATCCACTTTAGTCACTTTTGACTACACCTTCAAGGCTCACAATTCTTTGTTCGATATTTCAGAATTCTATTGATATGATTAAGTTTAGGGCATGACTCTGATACCATGTTAGGAATCACATATCTCCACGATGGTATGATATTGTCCACTTTGAGCATAAGTTCTCATGGCTTTGCTTTGGGCTTCCTCATAAGACCTCATACCAATGGAGATAATATTCCCCACTTATAAACTCATGATTTTCCATAATATTCCCCACTTATAAACTCATGATTTTCCACTAAATTAATCACCGGGGACTCACTCCCAATAATCCTCAACACAAATCTGGGGATATGCCTTCGAAGTAGTATGGATGAACATCCAGTCCTGCCTTTATGCCTTTTACTAGCATTTAAGATTGTTTCTGTTGATAACTAATTGTGATTTCAATTCCACCTTGATTTACTTAAACTATTTCCAAAAGTTTAAAACTATGATTTTTTTAGGTATATTAGCTGTCTATTTCTGTTATTTGGCATTCTCAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAAGGACTGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCATTGGCTAATTGTCCACAGCCTCTTCAAGATGGTAAATTTTATTACAATTCAAACTCGTATCCACTGGAGTTCTTATGGGGTTTTCTTCTTTTAAATTATATGTCTCGTTTTCCATCTGGAACTGTAGGAGGAACTAAATTCGCCAGTTGTTTTATTTGTAACGAAAGTGGACACTTGAGCAAAAACTGTCCGAAGAACACTCATGGGATCTATCCTAAGGTATTTGCTGTAATGAATTCTAGGCTGTCCCTCAGTTTCCTCGTATCATACAATTTTAAGGATGCCCTCCTATGATGTTCTGCAGGGAGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGCCACCCAATTTTCTGGTGGGGCTTATGATGGTAACAAATGTAAGTTTCCAAATTTGTTTCTATTTTTTCATTTTTTGTGTGTTAGACATAGAGAAACCATTTTGAAACATCTCCATTTTGACTGAGATACGAGGGTTAGACATAGAAACCATGACCTTTGATCATATTATTTCATCCACTCAAGGTCAAGCCTGCATGGATGAGTATCAAATAACAGTGAAATGATGATCTGCATTCATTTGCTAGGATTTTGTAGTACAACCATGTTGATCAAAGTAAATGATTTTGAATCTTCCAAAGTTCTTCGTTAGTTCTTGTTTTTGTATCGAGTACCTTTCTGGGAATTTCATGAACACGCAAAAAAGAGATGTTTCGATCAAAACTGCCACTGTGGAAAGCTGTTCTTTTCAGGATTGACAAACATCTTGTAAAACAATCTATTATAATATCTTGAAAAGCATGAATGGGAAACATAATATTATGAGTAATCATTCATTTTCTTGTCTCAGCATCTGGATATGTGGAAATGCATAGACGACCAGAGACGAGGCGTGTGAGCGGCGATGATCTCGAGGATGATTTCAACATCGACGAAGATCATTTGCAGATGAAAGATGCAAAAGTGGAAAAGAAAAAGGGTCCCAGAGTTGTGCAGTTCATGGATTGAATTGAATGATAGCATAGCTGTATGAGAAAGATTCTTTTACACATGAGAAAAAGTGGGTAGTTTTGGAACATCACCCATTATTTACAACATTAATTGGTCAAATTTGAAGTAAATATGAGAGACATTTGTGTCTAAAATTGATGTAGTTTGGTAAAATTAAGGAGGTTTGTTATCTTGTGGAGCTTTGTTTAAGGAAGAGACGTGGATGAGGACATAATCAGCCATAGAAAACAATTGTGAGCCTTGGATTTGTCCCTCAAA

mRNA sequence

ATGGTGAGCCAAAGGCAAAGACTTGCCCGGAAAAAGTACAGAGAAGAACACCCGGAACTGTTTCCGGAAGCAGAGCCAACGCCACCTAAAGACCCCGACAAGAAGAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGCAGAATCGAACTCAACCAGCGACCCAAATAAACCCCACAAGAAGAGTTTTAAGAAACACCCTCTTAGAGTGACTGGGATGAAACCTGGAGAAAGCTGCTTCATCTGCAAAGCCAAAGACCACATTGCTAAGCTTTGCCCCGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAAGGACTGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCATTGGCTAATTGTCCACAGCCTCTTCAAGATGGAGGAACTAAATTCGCCAGTTGTTTTATTTGTAACGAAAGTGGACACTTGAGCAAAAACTGTCCGAAGAACACTCATGGGATCTATCCTAAGGGAGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGCCACCCAATTTTCTGGTGGGGCTTATGATGGTAACAAATCATCTGGATATGTGGAAATGCATAGACGACCAGAGACGAGGCGTGTGAGCGGCGATGATCTCGAGGATGATTTCAACATCGACGAAGATCATTTGCAGATGAAAGATGCAAAAGTGGAAAAGAAAAAGGGTCCCAGAGTTGTGCAGTTCATGGATTGAATTGAATGATAGCATAGCTGTATGAGAAAGATTCTTTTACACATGAGAAAAAGTGGGTAGTTTTGGAACATCACCCATTATTTACAACATTAATTGGTCAAATTTGAAGTAAATATGAGAGACATTTGTGTCTAAAATTGATGTAGTTTGGTAAAATTAAGGAGGTTTGTTATCTTGTGGAGCTTTGTTTAAGGAAGAGACGTGGATGAGGACATAATCAGCCATAGAAAACAATTGTGAGCCTTGGATTTGTCCCTCAAA

Coding sequence (CDS)

ATGGTGAGCCAAAGGCAAAGACTTGCCCGGAAAAAGTACAGAGAAGAACACCCGGAACTGTTTCCGGAAGCAGAGCCAACGCCACCTAAAGACCCCGACAAGAAGAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGCAGAATCGAACTCAACCAGCGACCCAAATAAACCCCACAAGAAGAGTTTTAAGAAACACCCTCTTAGAGTGACTGGGATGAAACCTGGAGAAAGCTGCTTCATCTGCAAAGCCAAAGACCACATTGCTAAGCTTTGCCCCGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAAGGACTGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCATTGGCTAATTGTCCACAGCCTCTTCAAGATGGAGGAACTAAATTCGCCAGTTGTTTTATTTGTAACGAAAGTGGACACTTGAGCAAAAACTGTCCGAAGAACACTCATGGGATCTATCCTAAGGGAGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGCCACCCAATTTTCTGGTGGGGCTTATGATGGTAACAAATCATCTGGATATGTGGAAATGCATAGACGACCAGAGACGAGGCGTGTGAGCGGCGATGATCTCGAGGATGATTTCAACATCGACGAAGATCATTTGCAGATGAAAGATGCAAAAGTGGAAAAGAAAAAGGGTCCCAGAGTTGTGCAGTTCATGGATTGA

Protein sequence

MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPHKKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDFNIDEDHLQMKDAKVEKKKGPRVVQFMD

Homology

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BLAST of CmaCh16G001240 vs. Swiss-Prot
Match: YL92_SCHPO (Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC683.02c PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.6e-24
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 98  QWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFAS 157
           Q  ++K C  CR++GH +++CP+  +      +C+ CG   HSL  C +    G  KFA 
Sbjct: 72  QRNRDKFCFACRQQGHIVQDCPEAKDNV---SICFRCGSKEHSLNACSKK---GPLKFAK 131

Query: 158 CFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDC 199
           CFIC+E+GHLS  C +N  G+YPKGGCCK C  V HLAKDC
Sbjct: 132 CFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166

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BLAST of CmaCh16G001240 vs. Swiss-Prot
Match: Y3800_DROME (CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 44/124 (35.48%), Postives = 62/124 (50.00%), Query Frame = 1


Query: 78  ESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLCYNCGET 137
           E C+ C    H A+ CPE+A+      C  C   GH  K+C        D   CY C +T
Sbjct: 55  EKCYKCNQFGHFARACPEEAER-----CYRCNGIGHISKDCTQ-----ADNPTCYRCNKT 114

Query: 138 GHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKD 197
           GH + NCP+ + + G    SC+ CN +GH+SKNCP+ +         C  CG+  HL ++
Sbjct: 115 GHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSK-------TCYGCGKSGHLRRE 161

Query: 198 CPNK 202
           C  K
Sbjct: 175 CDEK 161

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BLAST of CmaCh16G001240 vs. Swiss-Prot
Match: ZCHC9_HUMAN (Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens GN=ZCCHC9 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-18
Identity = 64/207 (30.92%), Postives = 94/207 (45.41%), Query Frame = 1


Query: 32  PDKKKKKKKSKFKRKKAESNSTSDPNKPHKKSFKKHPLRVTGMKP-GESCFICKAKDHIA 91
           P  K KK K K +    + N   +  + + +      +  T  +   E   +   KD   
Sbjct: 54  PQAKHKKNKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRR 113

Query: 92  KLCPEKAQWEKNK--ICLLCRRRGHSLKNCPDKNE-RTVDKKLCYNCGETGHSLANCPQP 151
           +    K Q  K    +C  CR+ GH + +CP   E + +   +CY CG T H +  C   
Sbjct: 114 EGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAK 173

Query: 152 LQD--GGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCP---NKA 211
           +    G   FA CF+C E GHLS++CP N  G+Y  GG CK CG V HL KDCP   N  
Sbjct: 174 VDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSE 233

Query: 212 TQFSGGAYDGNKSSGYVEMHRRPETRR 230
              + G +    S+ Y E+   P+ ++
Sbjct: 234 RMVTVGRWAKGMSADYEEILDVPKPQK 260

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BLAST of CmaCh16G001240 vs. Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.0e-18
Identity = 45/148 (30.41%), Postives = 65/148 (43.92%), Query Frame = 1


Query: 79  SCFICKAKDHIAKLCPEKAQW--EKNKICLLCRRRGHSLKNCPDK-NERTVDKKLCYNCG 138
           SC  C  + H A+ CPE      E++  C  C   GH  + CP++          C+ CG
Sbjct: 17  SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76

Query: 139 ETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKN----------------THGIY 198
           E GH   +CP   + G  K   C+ C + GHLS++CP +                  G Y
Sbjct: 77  EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGY 136

Query: 199 PKGGCCKTCGEVTHLAKDCPNKATQFSG 208
                C  CG+  H+++DCPN    +SG
Sbjct: 137 SGDRTCYKCGDAGHISRDCPNGQGGYSG 164

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BLAST of CmaCh16G001240 vs. Swiss-Prot
Match: ZCHC9_MOUSE (Zinc finger CCHC domain-containing protein 9 OS=Mus musculus GN=Zcchc9 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-17
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1


Query: 26  PTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPHKKSFKKHPL-RVTGMKPGESCFICK 85
           P     P  K+KK K K +    + N   +  K + +      L      +  E   +  
Sbjct: 48  PLRNDSPQAKRKKNKKKKEYLNEDVNGFMEYLKQNSQVLHNGQLIAADSQEVREEIAVAL 107

Query: 86  AKDHIAKLCPEKAQWEKNK--ICLLCRRRGHSLKNCPDKNE-RTVDKKLCYNCGETGHSL 145
            KD   +    K Q  K    +C  CR+ GH + +CP   E + +   +CY CG T H +
Sbjct: 108 KKDSRREGRRLKRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEM 167

Query: 146 ANCPQPLQD--GGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDC 199
           + C   +    G   FA CF+C E GHLS++CP NT G+Y  GG CK CG V H  KDC
Sbjct: 168 SKCRANVDPALGEFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226

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BLAST of CmaCh16G001240 vs. TrEMBL
Match: A0A0A0L9S9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182130 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 4.8e-131
Identity = 231/267 (86.52%), Postives = 241/267 (90.26%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MV+QRQRLARKKY+EEHPELFP+AEPTPPKDPD  KKKKKSKFKRKK ESNS  DP KPH
Sbjct: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPD--KKKKKSKFKRKKEESNSNRDPTKPH 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           KK FKKHPLRV GMKPGESCFICKA DHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD
Sbjct: 61  KKGFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KNE TVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP
Sbjct: 121 KNEGTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQ-FSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDF 240
           KGGCCKTCGEVTHLAKDCP K TQ F      G +SSGYVEM RRPET+ +SGDDLEDDF
Sbjct: 181 KGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYRSSGYVEMPRRPETKLISGDDLEDDF 240

Query: 241 NIDEDHLQMKDAKVEKKKGPRVVQFMD 267
            IDE  LQ+KDAK+ KKKGP+VV+FMD
Sbjct: 241 MIDEGSLQIKDAKMGKKKGPKVVKFMD 265

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BLAST of CmaCh16G001240 vs. TrEMBL
Match: K4BF47_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 2.0e-100
Identity = 187/266 (70.30%), Postives = 213/266 (80.08%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MVS+RQR+ARK+Y+E +PELFP+ EPTPPKDP+ KKKKKKS FK+KK ES    DPNK  
Sbjct: 1   MVSKRQRIARKRYKEANPELFPKPEPTPPKDPN-KKKKKKSTFKKKKGES---KDPNK-- 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           K+SF KHP RV GMKPGESCFICK  DHIA+ CP KA+WEKNKICLLCRRRGHSLKNCP+
Sbjct: 61  KRSFTKHPFRVAGMKPGESCFICKEHDHIARDCPRKAEWEKNKICLLCRRRGHSLKNCPN 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KN+  VDKKLCYNCGET HSLANCP PLQDGGTKFASCFIC E GHLSK+CPKNTHGIYP
Sbjct: 121 KNDEVVDKKLCYNCGETSHSLANCPYPLQDGGTKFASCFICKEQGHLSKDCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDFN 240
           KGGCCK CG VTHLA+DCPNK+ + S  A    K S + +  R   T+  SGDDLEDDFN
Sbjct: 181 KGGCCKICGGVTHLARDCPNKSGKASDAAIGRFKISQFEDRPRGQVTKLSSGDDLEDDFN 240

Query: 241 IDEDHL-QMKDAKVEKKKGPRVVQFM 266
              D + +  DAK++KKK P+VV F+
Sbjct: 241 FKADDVNEDDDAKLKKKKEPKVVNFV 260

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BLAST of CmaCh16G001240 vs. TrEMBL
Match: B9R9B0_RICCO (Actin depolymerizing factor, putative OS=Ricinus communis GN=RCOM_1495930 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.8e-99
Identity = 179/273 (65.57%), Postives = 218/273 (79.85%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MVSQRQRLARKK+R+EHPELFP+ EPTPPKDP+KKKKK  +KFKRK++ES  + DPN+P+
Sbjct: 1   MVSQRQRLARKKFRQEHPELFPKPEPTPPKDPNKKKKKNNTKFKRKRSESKESKDPNEPN 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           KK FKKHPLRV GMKPGESCFICKAKDHIAKLCP+KA+WE+NKICLLCR+RGHSLK CP+
Sbjct: 61  KKRFKKHPLRVPGMKPGESCFICKAKDHIAKLCPQKAEWERNKICLLCRQRGHSLKRCPN 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           K +  VD+KLCYNCGETGHSL+NCPQPL++GGTK+A+CFICNESGHLSK+CP+NT GIYP
Sbjct: 121 KKDENVDRKLCYNCGETGHSLSNCPQPLKNGGTKYANCFICNESGHLSKDCPQNTRGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPE---TRRVSGDDLED 240
           KGGCCK CG VTHLA+DCP K  + S  A     S   +E   R     T+ +SGD+L+D
Sbjct: 181 KGGCCKICGGVTHLARDCPEKGKRGSLAA-----SGEVIEKEERQTPKLTKFISGDELDD 240

Query: 241 DFNIDEDHLQMKD---------AKVEKKKGPRV 262
           DF  +  +   K+         AK++KK+G ++
Sbjct: 241 DFMTENTYAVEKERGSDSKDGHAKLKKKQGHKL 268

[Close]

BLAST of CmaCh16G001240 vs. TrEMBL
Match: M1B4Z9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402014344 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.8e-98
Identity = 184/265 (69.43%), Postives = 211/265 (79.62%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MVS+RQ+LARK+Y++ +PELFP+ EPTPPKDP+KKKKKK S FK+KK ES    DPN  +
Sbjct: 1   MVSKRQKLARKRYKDANPELFPKPEPTPPKDPNKKKKKK-STFKKKKGESK---DPN--N 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           K+SF KHP RV GMKPGESCFICK  DHIA+ CP KA+WEKNKICLLCRRRGHSLKNCP+
Sbjct: 61  KRSFTKHPFRVAGMKPGESCFICKEHDHIARDCPRKAEWEKNKICLLCRRRGHSLKNCPN 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KN+  VDKKLCYNCG T HSLANCP PLQDGGTKFASCFIC E GHLSK+CPKNTHGIYP
Sbjct: 121 KNDEVVDKKLCYNCGNTSHSLANCPYPLQDGGTKFASCFICKEQGHLSKDCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDFN 240
           KGGCCK CG VTHLA+DCPNK+ + S  A    K S + +  R   T+   GDDLEDDFN
Sbjct: 181 KGGCCKICGGVTHLARDCPNKSGKASDAAIGRFKISQFEDRPRGQVTKLSGGDDLEDDFN 240

Query: 241 -IDEDHLQMKDAKVEKKKGPRVVQF 265
            + ED  +  DAK++KKK P+VV F
Sbjct: 241 FMAEDVNEDDDAKLKKKKEPKVVNF 259

[Close]

BLAST of CmaCh16G001240 vs. TrEMBL
Match: A0A0V0HPY3_SOLCH (Putative vascular-related nac-domain 6-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-98
Identity = 184/265 (69.43%), Postives = 210/265 (79.25%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MVS+RQ+LARK+Y++ +PELFP+ EPTPPKDP+KKKKKK S FK+KK ES    DPN  +
Sbjct: 1   MVSKRQKLARKRYKDANPELFPKPEPTPPKDPNKKKKKK-STFKKKKGESK---DPN--N 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           K+SF KHP RV GMKPGESCFICK  DHIA+ CP KA+WEKNKICLLCRRRGHSLKNCP+
Sbjct: 61  KRSFTKHPFRVAGMKPGESCFICKEHDHIARDCPRKAEWEKNKICLLCRRRGHSLKNCPN 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KN+  VDKKLCYNCG T HSLANCP PLQDGGTKFASCFIC E GHLSK+CPKNTHGIYP
Sbjct: 121 KNDEVVDKKLCYNCGNTSHSLANCPYPLQDGGTKFASCFICKEQGHLSKDCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDFN 240
           KGGCCK CG VTHLA+DCPNK+ + S  A    K S + +  R   T+  SGDDLEDDFN
Sbjct: 181 KGGCCKICGGVTHLARDCPNKSGKASDVAIGRFKISQFEDRPRGQVTKLSSGDDLEDDFN 240

Query: 241 ID-EDHLQMKDAKVEKKKGPRVVQF 265
              ED  +  D K++KKK P+VV F
Sbjct: 241 FKAEDVNEDDDTKLKKKKEPKVVNF 259

[Close]

BLAST of CmaCh16G001240 vs. TAIR10
Match: AT5G52380.1 (AT5G52380.1 VASCULAR-RELATED NAC-DOMAIN 6)

HSP 1 Score: 324.7 bits (831), Expect = 5.3e-89
Identity = 163/275 (59.27%), Postives = 200/275 (72.73%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MV+QR+RLA+K+Y+E +PELFP+AEPTPPKDP+KKKKKK S FK+KK  S ST  P +  
Sbjct: 1   MVNQRRRLAQKRYKEANPELFPKAEPTPPKDPNKKKKKK-SLFKKKKPGS-STDRPQRTG 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
             +  +HPLRV GMKPGE CFIC +K HIAKLCPEK++WE+NKICL CRRRGHSLKNCP+
Sbjct: 61  SST--RHPLRVPGMKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPE 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KN  + +KKLCYNCG+TGHSL++CP P++DGGTKFASCFIC   GH+SKNCP+N HGIYP
Sbjct: 121 KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDF- 240
            GGCCK CG V HL KDCP+K  Q S       K +   +   R +  + SGDDLEDDF 
Sbjct: 181 MGGCCKVCGSVAHLVKDCPDKFNQESAQP----KKTSRFDATPRGKLTKFSGDDLEDDFT 240

Query: 241 ---------NIDEDHLQMKDAKVEKKKGPRVVQFM 266
                    N  +D  Q      +KK+GP++V F+
Sbjct: 241 EEPKSSKKINTSDDSAQNSVEVKKKKQGPKIVNFV 267

[Close]

BLAST of CmaCh16G001240 vs. TAIR10
Match: AT3G43590.1 (AT3G43590.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-14
Identity = 40/127 (31.50%), Postives = 55/127 (43.31%), Query Frame = 1


Query: 72  TGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLC 131
           T  K  + CFIC + +H AK C       K   C +C++ GH  K+CPDK +      +C
Sbjct: 183 TPTKRRKPCFICGSLEHGAKQC------SKGHDCYICKKTGHRAKDCPDKYKNGSKGAVC 242

Query: 132 YNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEV 191
             CG+ GH +  C         K   C+IC   GHL    P N+         C  CG++
Sbjct: 243 LRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNS---LSWAVSCYRCGQL 300

Query: 192 THLAKDC 199
            H    C
Sbjct: 303 GHSGLAC 300

[Close]

BLAST of CmaCh16G001240 vs. TAIR10
Match: AT4G36020.1 (AT4G36020.1 cold shock domain protein 1)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-11
Identity = 41/131 (31.30%), Postives = 59/131 (45.04%), Query Frame = 1


Query: 105 CLLCRRRGHSLKNCP------DKNERTVDKKLCYNCGETGHSLANCPQP---LQDGGTKF 164
           C  C   GH  K+C           R+   + CYNCG+TGH   +C       Q G TK 
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161

Query: 165 AS--CFICNESGHLSKNCPKNTHGIYPKGGC-------CKTCGEVTHLAKDCPNKATQFS 218
            +  C+ C + GH++++C + + G   + G        C TCG+V H A+DC  K    +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVA--A 221

[Close]

BLAST of CmaCh16G001240 vs. TAIR10
Match: AT2G17870.1 (AT2G17870.1 cold shock domain protein 3)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-09
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 1


Query: 131 CYNCGETGHSLANCPQPLQDGGTKFAS-----------CFICNESGHLSKNCPKNTHGIY 190
           C+NCGE GH   +C      GG  F             C++C + GH +++C ++  G  
Sbjct: 96  CFNCGEVGHMAKDCDGG--SGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNS 155

Query: 191 PKGGC----CKTCGEVTHLAKDC--PNKATQFSGGAYDGNKSSG 218
             GG     C +CGEV HLAKDC   +   ++ GG   G+   G
Sbjct: 156 GGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDG 197

[Close]

BLAST of CmaCh16G001240 vs. NCBI nr
Match: gi|778688554|ref|XP_011652775.1| (PREDICTED: zinc finger CCHC domain-containing protein 9 [Cucumis sativus])

HSP 1 Score: 475.3 bits (1222), Expect = 6.9e-131
Identity = 231/267 (86.52%), Postives = 241/267 (90.26%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MV+QRQRLARKKY+EEHPELFP+AEPTPPKDPD  KKKKKSKFKRKK ESNS  DP KPH
Sbjct: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPD--KKKKKSKFKRKKEESNSNRDPTKPH 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           KK FKKHPLRV GMKPGESCFICKA DHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD
Sbjct: 61  KKGFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KNE TVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP
Sbjct: 121 KNEGTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQ-FSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDF 240
           KGGCCKTCGEVTHLAKDCP K TQ F      G +SSGYVEM RRPET+ +SGDDLEDDF
Sbjct: 181 KGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYRSSGYVEMPRRPETKLISGDDLEDDF 240

Query: 241 NIDEDHLQMKDAKVEKKKGPRVVQFMD 267
            IDE  LQ+KDAK+ KKKGP+VV+FMD
Sbjct: 241 MIDEGSLQIKDAKMGKKKGPKVVKFMD 265

[Close]

BLAST of CmaCh16G001240 vs. NCBI nr
Match: gi|700202244|gb|KGN57377.1| (hypothetical protein Csa_3G182130 [Cucumis sativus])

HSP 1 Score: 475.3 bits (1222), Expect = 6.9e-131
Identity = 231/267 (86.52%), Postives = 241/267 (90.26%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MV+QRQRLARKKY+EEHPELFP+AEPTPPKDPD  KKKKKSKFKRKK ESNS  DP KPH
Sbjct: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPD--KKKKKSKFKRKKEESNSNRDPTKPH 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           KK FKKHPLRV GMKPGESCFICKA DHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD
Sbjct: 61  KKGFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KNE TVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP
Sbjct: 121 KNEGTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQ-FSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDF 240
           KGGCCKTCGEVTHLAKDCP K TQ F      G +SSGYVEM RRPET+ +SGDDLEDDF
Sbjct: 181 KGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYRSSGYVEMPRRPETKLISGDDLEDDF 240

Query: 241 NIDEDHLQMKDAKVEKKKGPRVVQFMD 267
            IDE  LQ+KDAK+ KKKGP+VV+FMD
Sbjct: 241 MIDEGSLQIKDAKMGKKKGPKVVKFMD 265

[Close]

BLAST of CmaCh16G001240 vs. NCBI nr
Match: gi|659077480|ref|XP_008439227.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis melo])

HSP 1 Score: 442.6 bits (1137), Expect = 4.9e-121
Identity = 216/244 (88.52%), Postives = 220/244 (90.16%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MVSQRQRLARKKYRE HPELFP+AEPTPPKDPDKKKK   SKFKRKK ESNS  DPNKPH
Sbjct: 1   MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKK---SKFKRKKGESNSNRDPNKPH 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           KK FKKHPLRV GMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD
Sbjct: 61  KKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KNE T+DKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP
Sbjct: 121 KNEGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDFN 240
           KGGCCKTCGEVTHLAKDCP K TQ    A     +SGYVEM RRPET+ VSGDDLEDDF 
Sbjct: 181 KGGCCKTCGEVTHLAKDCPKKGTQVFDRA-----ASGYVEMPRRPETKLVSGDDLEDDFM 236

Query: 241 IDED 245
           IDED
Sbjct: 241 IDED 236

[Close]

BLAST of CmaCh16G001240 vs. NCBI nr
Match: gi|970014363|ref|XP_015068170.1| (PREDICTED: uncharacterized protein C683.02c [Solanum pennellii])

HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100
Identity = 187/266 (70.30%), Postives = 214/266 (80.45%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MVS+RQ+LARK+Y+E +PELFP+ EPTPPKDP+ KKKKKKS FK+KK ES    DPNK  
Sbjct: 1   MVSKRQKLARKRYKEANPELFPKPEPTPPKDPN-KKKKKKSTFKKKKGES---KDPNK-- 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           K+SF KHP RV GMKPGESCFICK  DHIA+ CP KA+WEKNKICLLCRRRGHSLKNCP+
Sbjct: 61  KRSFTKHPFRVAGMKPGESCFICKEHDHIARDCPRKAEWEKNKICLLCRRRGHSLKNCPN 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           KN+  VDKKLCYNCG+T HSLANCP PLQDGGTKFASCFIC E GHLSK+CPKNTHGIYP
Sbjct: 121 KNDEVVDKKLCYNCGDTSHSLANCPYPLQDGGTKFASCFICKEQGHLSKDCPKNTHGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPETRRVSGDDLEDDFN 240
           KGGCCK CG VTHLA+DCPNK+ + S  A D  K S + +  R   T+  SGDDLEDDFN
Sbjct: 181 KGGCCKICGGVTHLARDCPNKSGKASDAAIDRFKISQFEDRPRGQVTKLSSGDDLEDDFN 240

Query: 241 IDEDHL-QMKDAKVEKKKGPRVVQFM 266
              D + +  DAK++KKK P+VV F+
Sbjct: 241 FKADDVNEDDDAKLKKKKEPKVVNFV 260

[Close]

BLAST of CmaCh16G001240 vs. NCBI nr
Match: gi|1000984348|ref|XP_015577911.1| (PREDICTED: uncharacterized protein LOC8270014 [Ricinus communis])

HSP 1 Score: 374.8 bits (961), Expect = 1.3e-100
Identity = 182/276 (65.94%), Postives = 220/276 (79.71%), Query Frame = 1


Query: 1   MVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKKSKFKRKKAESNSTSDPNKPH 60
           MVSQRQRLARKK+R+EHPELFP+ EPTPPKDP+KKKKK  +KFKRK++ES  + DPN+P+
Sbjct: 1   MVSQRQRLARKKFRQEHPELFPKPEPTPPKDPNKKKKKNNTKFKRKRSESKESKDPNEPN 60

Query: 61  KKSFKKHPLRVTGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPD 120
           KK FKKHPLRV GMKPGESCFICKAKDHIAKLCP+KA+WE+NKICLLCR+RGHSLK CP+
Sbjct: 61  KKRFKKHPLRVPGMKPGESCFICKAKDHIAKLCPQKAEWERNKICLLCRQRGHSLKRCPN 120

Query: 121 KNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYP 180
           K +  VD+KLCYNCGETGHSL+NCPQPL++GGTK+A+CFICNESGHLSK+CP+NT GIYP
Sbjct: 121 KKDENVDRKLCYNCGETGHSLSNCPQPLKNGGTKYANCFICNESGHLSKDCPQNTRGIYP 180

Query: 181 KGGCCKTCGEVTHLAKDCPNKATQFSGGAYDGNKSSGYVEMHRRPE---TRRVSGDDLED 240
           KGGCCK CG VTHLA+DCP K  + S  A     S   +E   R     T+ +SGD+L+D
Sbjct: 181 KGGCCKICGGVTHLARDCPEKGKRGSLAA-----SGEVIEKEERQTPKLTKFISGDELDD 240

Query: 241 DFNIDEDHLQMKD---------AKVEKKKGPRVVQF 265
           DF  +  +   K+         AK++KK+G +VV F
Sbjct: 241 DFMTENTYAVEKERGSDSKDGHAKLKKKQGHKVVNF 271

The following BLAST results are available for this feature:

BLAST of CmaCh16G001240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YL92_SCHPO	9.6e-24	47.52	Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Y3800_DROME	1.2e-18	35.48	CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 S...	[more]
ZCHC9_HUMAN	2.1e-18	30.92	Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens GN=ZCCHC9 PE=1 SV=2	[more]
HEXP_LEIMA	6.0e-18	30.41	DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1	[more]
ZCHC9_MOUSE	2.3e-17	32.96	Zinc finger CCHC domain-containing protein 9 OS=Mus musculus GN=Zcchc9 PE=2 SV=2	[more]

BLAST of CmaCh16G001240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9S9_CUCSA	4.8e-131	86.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182130 PE=4 SV=1	[more]
K4BF47_SOLLC	2.0e-100	70.30	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
B9R9B0_RICCO	2.8e-99	65.57	Actin depolymerizing factor, putative OS=Ricinus communis GN=RCOM_1495930 PE=4 S...	[more]
M1B4Z9_SOLTU	1.8e-98	69.43	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402014344 PE=4 SV=1	[more]
A0A0V0HPY3_SOLCH	4.1e-98	69.43	Putative vascular-related nac-domain 6-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CmaCh16G001240 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52380.1	5.3e-89	59.27	VASCULAR-RELATED NAC-DOMAIN 6	[more]
AT3G43590.1	7.3e-14	31.50	zinc knuckle (CCHC-type) family protein	[more]
AT4G36020.1	4.4e-11	31.30	cold shock domain protein 1	[more]
AT2G17870.1	3.2e-09	32.69	cold shock domain protein 3	[more]

BLAST of CmaCh16G001240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688554\|ref\|XP_011652775.1\|	6.9e-131	86.52	PREDICTED: zinc finger CCHC domain-containing protein 9 [Cucumis sativus]	[more]
gi\|700202244\|gb\|KGN57377.1\|	6.9e-131	86.52	hypothetical protein Csa_3G182130 [Cucumis sativus]	[more]
gi\|659077480\|ref\|XP_008439227.1\|	4.9e-121	88.52	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis me...	[more]
gi\|970014363\|ref\|XP_015068170.1\|	1.3e-100	70.30	PREDICTED: uncharacterized protein C683.02c [Solanum pennellii]	[more]
gi\|1000984348\|ref\|XP_015577911.1\|	1.3e-100	65.94	PREDICTED: uncharacterized protein LOC8270014 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR025836	Zn_knuckle_CX2CX4HX4C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003779	actin binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001240.1	CmaCh16G001240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 77..110 score: 1.4E-8coord: 111..137 score: 6.4E-10coord: 164..201 score: 8.9E-12coord: 138..163 score: 3.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 130..146 score: 3.8E-6coord: 158..173 score: 2.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 79..95 score: 0.032coord: 130..146 score: 2.1E-4coord: 104..120 score: 0.33coord: 184..200 score: 0.015coord: 157..173 score: 9.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 158..173 score: 9.883coord: 185..200 score: 9.01coord: 131..146 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 124..175 score: 1.57E-11coord: 74..121 score: 2.6
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 103..119 score: 0.012coord: 184..199 score:
None	No IPR available	unknown	Coil	Coil	coord: 265..266 scor
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 1..204 score: 2.7E
None	No IPR available	PANTHER	PTHR23002:SF73	SUBFAMILY NOT NAMED	coord: 1..204 score: 2.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G001240	Cla006176	Watermelon (97103) v1	cmawmB316
CmaCh16G001240	Csa3G182130	Cucumber (Chinese Long) v2	cmacuB329
CmaCh16G001240	MELO3C006911	Melon (DHL92) v3.5.1	cmameB296
CmaCh16G001240	ClCG05G008070	Watermelon (Charleston Gray)	cmawcgB296
CmaCh16G001240	CSPI03G16960	Wild cucumber (PI 183967)	cmacpiB335
CmaCh16G001240	CmoCh18G012710	Cucurbita moschata (Rifu)	cmacmoB327
CmaCh16G001240	Lsi05G012240	Bottle gourd (USVL1VR-Ls)	cmalsiB312
CmaCh16G001240	Cp4.1LG14g06100	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G001240	Cp4.1LG09g00860	Cucurbita pepo (Zucchini)	cmacpeB339
CmaCh16G001240	MELO3C006911.2	Melon (DHL92) v3.6.1	cmamedB344
CmaCh16G001240	CsaV3_3G017130	Cucumber (Chinese Long) v3	cmacucB0383
CmaCh16G001240	Cla97C05G090120	Watermelon (97103) v2	cmawmbB346
CmaCh16G001240	Bhi01G000955	Wax gourd	cmawgoB0433
CmaCh16G001240	CsGy3G017040	Cucumber (Gy14) v2	cgybcmaB342
CmaCh16G001240	Carg15135	Silver-seed gourd	carcmaB1366
CmaCh16G001240	Carg22103	Silver-seed gourd	carcmaB1031

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G001240	CmaCh18G012480	Cucurbita maxima (Rimu)	cmacmaB338

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G001240	Cucurbita maxima (Rimu)	cmacmaB300
CmaCh16G001240	Cucurbita maxima (Rimu)	cmacmaB346
CmaCh16G001240	Cucurbita maxima (Rimu)	cmacmaB359
CmaCh16G001240	Cucumber (Gy14) v1	cgycmaB0248
CmaCh16G001240	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G001240	Cucurbita moschata (Rifu)	cmacmoB333
CmaCh16G001240	Cucurbita pepo (Zucchini)	cmacpeB358
CmaCh16G001240	Bottle gourd (USVL1VR-Ls)	cmalsiB320
CmaCh16G001240	Melon (DHL92) v3.6.1	cmamedB338
CmaCh16G001240	Silver-seed gourd	carcmaB0994
CmaCh16G001240	Cucumber (Chinese Long) v3	cmacucB0376
CmaCh16G001240	Watermelon (97103) v2	cmawmbB344