Carg22103 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22103
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger CCHC domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_229 : 101194 .. 104186 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTACGAGGGCTGAGTCCAATGGGCTTACGTTTTCCTGGCCCATATTATATTTTACTCATTTACTTTTTGTTTTTTAATTTCCATCTTTACTCATTTAAATTGTCGTCCATAGCCATAGCCTCCTTCAAATTAATGTTTCCGAACAGAATTTGGGAAACTTTTCTTCTAAAATTTATAATAAATAATATGAAATATATGAATTAAAATTATATATGAATTAAAATTATAATAATATGAAACTTTGCTCCAACATTGATGTTAATTATTGTCGTAGAATTTAGAAATATATGAATTAAAATTATAAATTTAAGGATTAAACGTTAAAACTTAGGGTTCTATCTAAAATTGAAATCCATGAGAGTAGGATTTGTTTTGGGGCATTGATATACAAAGAAGCCCAATTAGAATGGGAAGAGAAATCGACATGTAGTTAAACCCATTCGCATAAACCTCGCCGTCAGACCATTCGTTGAAAGAACCTCTTCGGGAATTCGCCGGAGCCGATCGACTTTCGATTATCAGGTGAAGATGGTGAGCCGGAGGCAAAAGCTTGCCCGGAAAAAGTACAGAGAAGAACACCCAGAATTGTTCCCGAAAGCAGAACCAACGCCACCAAAAGATCCGGAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGGGAGAATCGGATTCAAGGAACGACCCGAATAAACCACACAGAAAGGGATTTAAGAAACACCCTCTCAGAGTTCCTGGGATGAAGCCTGGTGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATCGCTAAGTTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGGTTTGATTTCTTGTTTTACCTTTCTTGTTTATGGTGTTTCACTGTTCACTGAGATTATGGAAATTTTGCTCATAGACATGGTATTGTTAGGAATGTGGTGTTTATGAAATTGGTTGGGATTCAGTTTGCCTCTTCAATCTGGGGCAAACTTCTTAACTCATTGATGCCAATGCTTAGGTTTCTCCATCAATTATGATCACTTGCAATAGGTTGTTAGAGATCTTGTGATCAAGAATAACATAGATTATTTGGAAGAGCTCTATTGTGAGATCCTACATCGGTTGGAGAGGAGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCTTAGGAGACGCGTTTTAAAAACCGTGAGGCTGACTATGATACGCAACGAGCCAAAGCAGACAATATCTGCTAGCGGTGAGGTCGGGCTGTTACAAATGATATTAGAGTTAGATACTCGAGAATGTTGATCTCCCAAGGGGGATGGATTGTGAGATCGCACATTGGTTGAAGAGGGAAATGAAGCATTTCTTATAAGAGTATGGAAACCTCTCCCTAGGAGACGTGTCTTAAAAACCGTGAGGCTGATGGGGATACGTAATGAGCCAAAGCGGATAATATCTGCTAGCTGTAGGCTTGAGATGTTACAAATGGTATCAGAGCCAGACAACGGGCGGTGTGCCAGTGAGAACGCTGATGTTCCAAGGGAGAAGGACTGTGAGATCTCACATCAGTTGGAGAGGGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAAACCTTGAGGAGAAGGGAAAGGTCACAAAAGACAATATCTGCTAGCGATGGGGTTGAGCTGTTACATCTATAGTAGACGTGTATACCAAATTGTTATTTGGCATTCACAGATATGCTTACTTTGCCGGAGACGAGGCCACAGCCTCAAGAACTGCCCCGACAAAACTGAGGACACAGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCACTAGCTAATTGTCCACAACCTCTTCAACATGGTAAATTTGGTTTCAATTCATACTCAAATTCATCTGTGTGCTTTGCATAATATGTAGAACAATTCCTTTTGGGTCTTTTCTGTTCCTAAACTCTTTCTACTGTTTTCCATCTTGGATCTGTAGGGGGAACTAGATTTGCCAATTGCTTTATTTGTAATGAAAGTGGACACTTAAGCAAGAACTGCCCAAAGAATACTCATGGGATCTACCCTAAGGTATTTGGTTTAACTTCCACGTTATGGTCACGGGCCAGGCTCTTGGCTTCGCCTGTACGTTGCCCCGTAGTTTCCTGTATCGTATAGCTCGAATAATTTCGTTGTATGATATTCTGCAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTGACACATTTAGCTAAGGACTGTCCAAAAAAAGGCACACAAGTTTTTGCTGGGCCTGGAGCATCTGGTAACAGATGTAAGTCTTCCTGTTTGCTGCTGTGACATGTTTGTTGACACAAATGATCTAAAATTATAATGTTCGGGAACCGAGTTCTTCGTATCGATAAACTTGTGCTTAAGATGCTTAGGATCTCCAGATTTGTGCTAAAGCTTTGTATTGTGAGTAGTAATTCGTTTTCTTTTGTCTCAGCATCTGGATATGTGGAAATGTCGAGACGACCAGAAACGAGGCTCGTCAGTGGTGACGACCTCGAGGATGACTTCATGGTCGAGGAAGATAATTTACAGATCAAAGATGCGAAACTCGGAAAGAAAAAGGGTCCCAAAGTTGTGAAATTCATGGATTGATAGGTCTATGGGGAAGATTAAACCTCATGTGTGTTGTAAAACCTTTTCTTTTACACGCAGAGAATATAGGAAGTCCCCTGAATGTATTTTTGTCTCTTAAATATAATATTATTAAGATGTTAGAGTTGTTTAATGTTCAAGCTTTTCATAACATTACTTCTATTTCATTCTTATTATTTTGTCGATCGAACGCTTTGCAATGACTTGGAACGATGAGATGGTGACTAGGATGCTCAACTAAATTAAGTTTGAAAGAATGACATTCAGATTGTCAAACATTCTAGAATTACACTAAAAAAACAACACTACATCATTAGTGTCATCGTGGGATTACATCATTAGTGTCATCGTGGGAT

mRNA sequence

CTTGTACGAGGGCTGAGTCCAATGGGCTTACGTTTTCCTGGCCCATATTATATTTTACTCATTTACTTTTTGTTTTTTAATTTCCATCTTTACTCATTTAAATTGTCGTCCATAGCCATAGCCTCCTTCAAATTAATGTTTCCGAACAGAATTTGGGAAACTTTTCTTCTAAAATTTATAATAAATAATATGAAATATATGAATTAAAATTATATATGAATTAAAATTATAATAATATGAAACTTTGCTCCAACATTGATGTTAATTATTGTCGTAGAATTTAGAAATATATGAATTAAAATTATAAATTTAAGGATTAAACGTTAAAACTTAGGGTTCTATCTAAAATTGAAATCCATGAGAGTAGGATTTGTTTTGGGGCATTGATATACAAAGAAGCCCAATTAGAATGGGAAGAGAAATCGACATGTAGTTAAACCCATTCGCATAAACCTCGCCGTCAGACCATTCGTTGAAAGAACCTCTTCGGGAATTCGCCGGAGCCGATCGACTTTCGATTATCAGGTGAAGATGGTGAGCCGGAGGCAAAAGCTTGCCCGGAAAAAGTACAGAGAAGAACACCCAGAATTGTTCCCGAAAGCAGAACCAACGCCACCAAAAGATCCGGAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGGGAGAATCGGATTCAAGGAACGACCCGAATAAACCACACAGAAAGGGATTTAAGAAACACCCTCTCAGAGTTCCTGGGATGAAGCCTGGTGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATCGCTAAGTTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGACATGGTATTGGGGAACTAGATTTGCCAATTGCTTTATTTGTAATGAAAGTGGACACTTAAGCAAGAACTGCCCAAAGAATACTCATGGGATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTGACACATTTAGCTAAGGACTGTCCAAAAAAAGGCACACAAGTTTTTGCTGGGCCTGGAGCATCTGGTAACAGATCATCTGGATATGTGGAAATGTCGAGACGACCAGAAACGAGGCTCGTCAGTGGTGACGACCTCGAGGATGACTTCATGGTCGAGGAAGATAATTTACAGATCAAAGATGCGAAACTCGGAAAGAAAAAGGGTCCCAAAGTTGTGAAATTCATGGATTGATAGGTCTATGGGGAAGATTAAACCTCATGTGTGTTGTAAAACCTTTTCTTTTACACGCAGAGAATATAGGAAGTCCCCTGAATGTATTTTTGTCTCTTAAATATAATATTATTAAGATGTTAGAGTTGTTTAATGTTCAAGCTTTTCATAACATTACTTCTATTTCATTCTTATTATTTTGTCGATCGAACGCTTTGCAATGACTTGGAACGATGAGATGGTGACTAGGATGCTCAACTAAATTAAGTTTGAAAGAATGACATTCAGATTGTCAAACATTCTAGAATTACACTAAAAAAACAACACTACATCATTAGTGTCATCGTGGGATTACATCATTAGTGTCATCGTGGGAT

Coding sequence (CDS)

ATGGTGAGCCGGAGGCAAAAGCTTGCCCGGAAAAAGTACAGAGAAGAACACCCAGAATTGTTCCCGAAAGCAGAACCAACGCCACCAAAAGATCCGGAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGGGAGAATCGGATTCAAGGAACGACCCGAATAAACCACACAGAAAGGGATTTAAGAAACACCCTCTCAGAGTTCCTGGGATGAAGCCTGGTGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATCGCTAAGTTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGACATGGTATTGGGGAACTAGATTTGCCAATTGCTTTATTTGTAATGAAAGTGGACACTTAAGCAAGAACTGCCCAAAGAATACTCATGGGATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTGACACATTTAGCTAAGGACTGTCCAAAAAAAGGCACACAAGTTTTTGCTGGGCCTGGAGCATCTGGTAACAGATCATCTGGATATGTGGAAATGTCGAGACGACCAGAAACGAGGCTCGTCAGTGGTGACGACCTCGAGGATGACTTCATGGTCGAGGAAGATAATTTACAGATCAAAGATGCGAAACTCGGAAAGAAAAAGGGTCCCAAAGTTGTGAAATTCATGGATTGA

Protein sequence

MVSRRQKLARKKYREEHPELFPKAEPTPPKDPEKKKKKKKRKKGESDSRNDPNKPHRKGFKKHPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTWYWGTRFANCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDNLQIKDAKLGKKKGPKVVKFMD

Homology

[Close]

BLAST of Carg22103 vs. NCBI nr
Match: XP_022945772.1 (uncharacterized protein LOC111449917 [Cucurbita moschata])

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-38
Identity = 138/201 (68.66%), Postives = 141/201 (70.15%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTW--------------------- 122
           HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEK                         
Sbjct: 69  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKXXXXXXXXXXXXXXXXXXXXXXDTV 128

Query: 123 -----------------------YWGTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXX 182
                                  + GT+FA XXXXXXXXXXXXXXXXX          XX
Sbjct: 129 DXXXXXXXXXXXXXXXXXXXXXQHGGTKFANXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 188

Query: 183 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN 220
           XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPET+LVSGDDLEDDFMVEEDN
Sbjct: 189 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETKLVSGDDLEDDFMVEEDN 248

[Close]

BLAST of Carg22103 vs. NCBI nr
Match: XP_022967999.1 (uncharacterized protein LOC111467373 [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 3.6e-33
Identity = 131/201 (65.17%), Postives = 134/201 (66.67%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTW--------------------- 122
           HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEK                         
Sbjct: 65  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKXXXXXXXXXXXXXXXXXXXXXXDTV 124

Query: 123 -----------------------YWGTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXX 182
                                  + GT++A XXXXXXXXXXXXXXXXX          XX
Sbjct: 125 DXXXXXXXXXXXXXXXXXXXXXQHGGTKYANXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184

Query: 183 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN 220
           XXXXXXXXXXXXXXXXXXXX     S NRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXVSSNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN 244

[Close]

BLAST of Carg22103 vs. NCBI nr
Match: XP_023542027.1 (uncharacterized protein LOC111802000 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 131/201 (65.17%), Postives = 134/201 (66.67%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTW--------------------- 122
           HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEK                         
Sbjct: 68  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKXXXXXXXXXXXXXXXXXXXXXXDTV 127

Query: 123 -----------------------YWGTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXX 182
                                  + GT+FA XXXXXXXXXXXXXXXXX          XX
Sbjct: 128 DXXXXXXXXXXXXXXXXXXXXXQHGGTKFANXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187

Query: 183 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN 220
           XXXXXXXXXXXXXXXXXXXX     S NRSSGYVEMSRRPET+LVSGDDLEDDFMVEEDN
Sbjct: 188 XXXXXXXXXXXXXXXXXXXXXXXXVSSNRSSGYVEMSRRPETKLVSGDDLEDDFMVEEDN 247

[Close]

BLAST of Carg22103 vs. NCBI nr
Match: KGN57377.1 (hypothetical protein Csa_3G182130 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 9.3e-29
Identity = 123/201 (61.19%), Postives = 130/201 (64.68%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTWYW------------------- 122
           HPLRVPGMKPGESCFICKA DHIAK CPEKAQWEKN                        
Sbjct: 65  HPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNXXXXXXXXXXXXXXXXXXXXEGTV 124

Query: 123 -------------------------GTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXX 182
                                    GT+F XXXXXXXXXXXXXXXXXX          XX
Sbjct: 125 DXXXXXXXXXXXXXXXXXXXPLQDGGTKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184

Query: 183 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN 220
           XXXXXXXXXXXXXXXXXXXX      G RSSGYVEM RRPET+L+SGDDLEDDFM++E +
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXVFGYRSSGYVEMPRRPETKLISGDDLEDDFMIDEGS 244

[Close]

BLAST of Carg22103 vs. NCBI nr
Match: XP_011652775.1 (PREDICTED: zinc finger CCHC domain-containing protein 9 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 9.3e-29
Identity = 123/201 (61.19%), Postives = 130/201 (64.68%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTWYW------------------- 122
           HPLRVPGMKPGESCFICKA DHIAK CPEKAQWEKN                        
Sbjct: 65  HPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNXXXXXXXXXXXXXXXXXXXXEGTV 124

Query: 123 -------------------------GTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXX 182
                                    GT+F XXXXXXXXXXXXXXXXXX          XX
Sbjct: 125 DXXXXXXXXXXXXXXXXXXXPLQDGGTKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184

Query: 183 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN 220
           XXXXXXXXXXXXXXXXXXXX      G RSSGYVEM RRPET+L+SGDDLEDDFM++E +
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXVFGYRSSGYVEMPRRPETKLISGDDLEDDFMIDEGS 244

[Close]

BLAST of Carg22103 vs. TAIR10
Match: AT5G52380.1 (VASCULAR-RELATED NAC-DOMAIN 6)

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-14
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNK 100
           HPLRVPGMKPGE CFIC +K HIAK CPEK++WE+NK
Sbjct: 63  HPLRVPGMKPGEGCFICHSKTHIAKLCPEKSEWERNK 99

[Close]

BLAST of Carg22103 vs. TrEMBL
Match: tr|A0A0A0L9S9|A0A0A0L9S9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182130 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.1e-29
Identity = 123/201 (61.19%), Postives = 130/201 (64.68%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTWYW------------------- 122
           HPLRVPGMKPGESCFICKA DHIAK CPEKAQWEKN                        
Sbjct: 65  HPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNXXXXXXXXXXXXXXXXXXXXEGTV 124

Query: 123 -------------------------GTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXX 182
                                    GT+F XXXXXXXXXXXXXXXXXX          XX
Sbjct: 125 DXXXXXXXXXXXXXXXXXXXPLQDGGTKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 184

Query: 183 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDN 220
           XXXXXXXXXXXXXXXXXXXX      G RSSGYVEM RRPET+L+SGDDLEDDFM++E +
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXVFGYRSSGYVEMPRRPETKLISGDDLEDDFMIDEGS 244

[Close]

BLAST of Carg22103 vs. TrEMBL
Match: tr|A0A1S3AY90|A0A1S3AY90_CUCME (LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=3656 GN=LOC103484078 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 97/179 (54.19%), Postives = 102/179 (56.98%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTWYW------------------- 122
           HPLRVPGMKPGESCFICKAKDHIAK CPEKAQWEK                         
Sbjct: 64  HPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKXXXXXXXXXXXXXXXXXXXXXXGTM 123

Query: 123 -------------------------GTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXX 182
                                    GT+FA      XXXXXXXXXXXX          XX
Sbjct: 124 DXXXXXXXXXXXXXXXXXXXPLQDGGTKFA------XXXXXXXXXXXXXXXXXXXXXXXX 183

Query: 183 XXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEED 198
           XXXXXXXXXXXXXXXXXXXX         +SGYVEM RRPET+LVSGDDLEDDFM++ED
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXDRAASGYVEMPRRPETKLVSGDDLEDDFMIDED 236

[Close]

BLAST of Carg22103 vs. TrEMBL
Match: tr|A0A0B0MH94|A0A0B0MH94_GOSAR (Zinc finger CCHC domain-containing 9 OS=Gossypium arboreum OX=29729 GN=F383_13392 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.9e-14
Identity = 69/157 (43.95%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTWYWGTRFAXXXXXXXXXXXXXX 122
           HPLRVPGM+PGESC+ICKAKDHIAK CP+KAQWEK+          XXXXXXXXXXXXX 
Sbjct: 67  HPLRVPGMRPGESCYICKAKDHIAKLCPQKAQWEKHMXXXXXXXXXXXXXXXXXXXXXXR 126

Query: 123 XXXXTHGIYPKGGCXXXXXXXXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRL 182
                +                                    G  S G  E      T+ 
Sbjct: 127 ASISAN----------------------------------REGGLSFGTDERPTGKVTKF 186

Query: 183 VSGDDLEDDFMVEEDNLQIKDAKLGKKK--GPKVVKF 218
            SGDDLEDDF+++E      DAK+  K   GPKVV F
Sbjct: 187 SSGDDLEDDFIIQEPESATNDAKIKSKNQTGPKVVNF 189

[Close]

BLAST of Carg22103 vs. TrEMBL
Match: tr|A0A0D2Q338|A0A0D2Q338_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G276900 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.6e-13
Identity = 95/197 (48.22%), Postives = 106/197 (53.81%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKTWY-------------------- 122
           HPLRVPGM+PGESC+ICKAKDHIAK CP+KAQWEK+                        
Sbjct: 67  HPLRVPGMRPGESCYICKAKDHIAKLCPQKAQWEKHMICLHCRQRGHSLKNCTEVMDKKX 126

Query: 123 --------------------WGTRFAXXXXXXXXXXXXXXXXXXTHGIYPKGGCXXXXXX 182
                                GT+FAXXXXXXXXXXXXXXXXXX          XXXXXX
Sbjct: 127 XXXXXXXXXXXXXXXXXLQDGGTKFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 186

Query: 183 XXXXXXXXXXXXXXXXAGPGASGNRSSGYVEMSRRPETRLVSGDDLEDDFMVEEDNLQIK 218
           XXXXXXXXXX            G+ S G  E      T+  SGDDLEDDF+++E      
Sbjct: 187 XXXXXXXXXXKGKRASISASREGSLSFGTGERPTGKVTKFSSGDDLEDDFIIQESESATN 246

[Close]

BLAST of Carg22103 vs. TrEMBL
Match: tr|A0A199VAH1|A0A199VAH1_ANACO (Actin-depolymerizing factor OS=Ananas comosus OX=4615 GN=ACMD2_20520 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.7e-13
Identity = 60/172 (34.88%), Postives = 77/172 (44.77%), Query Frame = 0


Query: 63  HPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKT----WYWGTRFA---------- 122
           HPLRVPGM+PGESCFICK+KDHIAK CPEKAQWE NK      ++ +R+A          
Sbjct: 67  HPLRVPGMRPGESCFICKSKDHIAKLCPEKAQWENNKVTILPLFFSSRYACYVGSADIVS 126

Query: 123 --XXXXXXXXXXXXXXXXXXTHGIYPK-------GGCXXXXXXXXXXXXXXXXXXXXXXA 182
                               +  ++P        GGC                      A
Sbjct: 127 RIARRKVILLARSIAIIVEKSDILFPSVPNPPKMGGCCKICGGVTHLARLCPNKGNKDLA 186

Query: 183 GPGASGNRSSGYVEMSRRPETRLV--SGDDLEDDFMVEEDNLQIKDAKLGKK 210
              ++G +++G    + R   + V  SGDDLEDDF+ EE     KDA L  K
Sbjct: 187 --SSAGPQNTGNTPENSRQGLQSVYRSGDDLEDDFIAEEAKNDKKDAVLYSK 236

The following BLAST results are available for this feature:

BLAST of Carg22103 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945772.1	4.9e-38	68.66	uncharacterized protein LOC111449917 [Cucurbita moschata]	[more]
XP_022967999.1	3.6e-33	65.17	uncharacterized protein LOC111467373 [Cucurbita maxima]	[more]
XP_023542027.1	1.1e-32	65.17	uncharacterized protein LOC111802000 [Cucurbita pepo subsp. pepo]	[more]
KGN57377.1	9.3e-29	61.19	hypothetical protein Csa_3G182130 [Cucumis sativus]	[more]
XP_011652775.1	9.3e-29	61.19	PREDICTED: zinc finger CCHC domain-containing protein 9 [Cucumis sativus]	[more]

BLAST of Carg22103 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52380.1	6.0e-14	78.38	VASCULAR-RELATED NAC-DOMAIN 6	[more]

BLAST of Carg22103 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22103 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9S9\|A0A0A0L9S9_CUCSA	6.1e-29	61.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182130 PE=4 SV=1	[more]
tr\|A0A1S3AY90\|A0A1S3AY90_CUCME	2.3e-15	54.19	LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=365...	[more]
tr\|A0A0B0MH94\|A0A0B0MH94_GOSAR	1.9e-14	43.95	Zinc finger CCHC domain-containing 9 OS=Gossypium arboreum OX=29729 GN=F383_1339...	[more]
tr\|A0A0D2Q338\|A0A0D2Q338_GOSRA	3.6e-13	48.22	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G276900 PE=4 ...	[more]
tr\|A0A199VAH1\|A0A199VAH1_ANACO	4.7e-13	34.88	Actin-depolymerizing factor OS=Ananas comosus OX=4615 GN=ACMD2_20520 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22103-RA	Carg22103-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 136..152 e-value: 0.019 score: 21.8 coord: 109..125 e-value: 8.5E-4 score: 28.6 coord: 75..91 e-value: 0.022 score: 21.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 136..152 e-value: 0.0043 score: 17.0 coord: 110..125 e-value: 2.5E-5 score: 24.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 137..152 score: 9.026
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 110..125 score: 9.883
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 104..162 e-value: 1.7E-12 score: 49.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR23002:SF48	ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 9	coord: 1..93
None	No IPR available	PANTHER	PTHR23002:SF48	ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 9	coord: 100..169
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 1..93
None	No IPR available	PANTHER	PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	coord: 100..169
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 104..154

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22103	Cla006176	Watermelon (97103) v1	carwmB0736
Carg22103	Csa3G182130	Cucumber (Chinese Long) v2	carcuB0754
Carg22103	MELO3C006911	Melon (DHL92) v3.5.1	carmeB0732
Carg22103	ClCG05G008070	Watermelon (Charleston Gray)	carwcgB0715
Carg22103	CSPI03G16960	Wild cucumber (PI 183967)	carcpiB0771
Carg22103	CmaCh16G001240	Cucurbita maxima (Rimu)	carcmaB1031
Carg22103	Lsi05G012240	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22103	Cp4.1LG09g00860	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22103	CsGy3G017040	Cucumber (Gy14) v2	carcgybB0733
Carg22103	MELO3C006911.2	Melon (DHL92) v3.6.1	carmedB0743
Carg22103	CsaV3_3G017130	Cucumber (Chinese Long) v3	carcucB0774
Carg22103	Cla97C05G090120	Watermelon (97103) v2	carwmbB0772
Carg22103	Bhi01G000955	Wax gourd	carwgoB0871

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22103	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22103	Watermelon (97103) v2	carwmbB0773
Carg22103	Wax gourd	carwgoB0872
Carg22103	Silver-seed gourd	carcarB583
Carg22103	Silver-seed gourd	carcarB594
Carg22103	Cucumber (Gy14) v1	carcgyB0828
Carg22103	Cucurbita maxima (Rimu)	carcmaB1032
Carg22103	Cucurbita moschata (Rifu)	carcmoB1002
Carg22103	Cucurbita moschata (Rifu)	carcmoB1003