CmaCh15G006370 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G006370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cma_Chr15 : 3014701 .. 3016695 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCAAGCTCTTGTCATGTCATGCTCTCCAGCATTGCATGGCATGGTCATCAGAGCGATTCCATGCGGCTTTTTGTGCATCCCATAAGGGAGAACCTCAGGCCAATTGAGATTACACTGAGCAGTGTGCCGAGCTCCATTTCAGTTTTCACACCTGTGAGTTGGGTAGTCAAATTCATAATTTGGTTCTGAAGTTTGGTTTCAAATCTGAAGCCATTGTCTCTCGTTCGCTGGTAAGCATGTATCCTAAACTACATGAAAGTCTTTATAGATATGTCCGTTAGAGATTTGATATCATGGAACACTATGATTATGGTTCTGGTTAACAATGTATACTTTGAAGCCCTACGCACTTTTAATAAATTGGTCAGGGAAGGTGTACTGCCTGATAGGATAACTCTAGCTGGAGTCTTATTAGCTTGCAGTCATGCTGGTTTTGTTGAGGAGGGGATAGTCACCTTCTCTACAATGACATATGAACACGGATCGTGCTGAGGAATGAACATTATTCTTTTGTAGTAGTTGGGCTGGAATATTATTAAAACACCACAATGCCAACCTACTTCTACATTTTGCAAATCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAGTTGTTGAAAGGGTTGCAGAGGGTGATGAAGCTGGAACTGCATTCATCCTTACTGTATTTGGTGCGGGCTCAAGCATTTGCAATGACAGGTAGATGGGAAAGGATCGCACTGATCGTGAGCTCCAGATTACTCTTAGGAACTCGAGGCTGGGAGGCGATACACGTATTGTGCTTAGGAATCCTTCGCAGAGTGCCTCATCCGGGTAAGTTTCTGCTGGACTTGTATATGCTTCATTTTTTTTGCAGCAAATGTGATTTTATGTTAACAGATTATGCTTGCTTTGTTCTGATGTTTATTGTCTATTCTCTCTGCATTTGTGTGGGTTTGCTATTGTGGGATACCAATTGAAAGCATTCCCAAAGTAGTTTGCTGGAACTAACTTTTGTGCAATGGAAGATGGAGTTTGGAAGAAAGCTGAAGCAGTGTGGAGAGATGTGTAAAGGAGGGGTAAGTGCTTCCTCTTAACTCCTCATGATCCTCCATTTTTATGACGATGGGCTTCCCTTAGAAAGTACAGAAAATGATTGAAACAGATCCGGAGTCTAATGATGAATGGACCAACAAATCTGGGTGCCTAGGTATCCACAGTAAGCCTCCAAAATATGTGGTTTTAGGAAATTAATTGATCATCATTATCTTTGCCTTACTTAATATGCCTTCATTTTGTGAAAGAATCGGGTTTCCCCACCGACCCAGTGACACACCAACCACGTCCCTTCCCTTTCTCCAATCATCAAGCCCACTTGTCCCTTTCTTTGTCTTTCGTCCTCCATTCATCCCATACAAATAGTTGAGTGAGGCTCAAAGACTCCTAAATCAATCTCAAGTCTTTTCTTTCACCTCTCCTTATAATCGAGGCAATGAAATTGTGAGACCAACAATGAATCGGTTCAGGAGCGCGATCGCTTTTATTTATCTATAAATAGAAAGCAATAGGCAAATAGAGCAAAAAGGACCAATTATTCAGGATAGAAATCCACCTACGCCCTCTTTCGAAGGGTTGGTGGGACATGGGAGCCTCAGCTCATGCATTGGTTTACCGAAAGAACCAATGCTATCCTTACTTCCTTCTATCGCTCCTTGCTCACTGGGGAGGAGTTGCAATTTGTTTCAGACTCTAGGAAGCTTTTTCAAACGTAAGCTAGCTGTTCTTTGCTGGCTGGAAAAAGTGTTAGTTTCTTCACACTAACATCACTCCATTTTTGTAATCTACTGGTCACATGTATGAGGGCTGGCTTCATTTATTTATTTTTAATCAACAAAAGCACTTACAACCCAAGTTTTCTTATGATATTTTATCTGTTGCTGCTAATTTCAGGATCCAAAGAACGGGTGATGCCAGAAAACGTGATCATATCAACTTGCTTATCATAG

mRNA sequence

ATGGGGTCAAGCTCTTGTCATGTCATGCTCTCCAGCATTGCATGGCATGGTCATCAGAGCGATTCCATGCGGCTTTTTGTGCATCCCATAAGGGAGAACCTCAGGCCAATTGAGATTACACTGAGCAGTGTGCCGAGCTCCATTTCAGTTTTCACACCTTTGGGCTGGAATATTATTAAAACACCACAATGCCAACCTACTTCTACATTTTGCAAATCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAGTTGTTGAAAGGGTTGCAGAGGGTGATGAAGCTGGAACTGCATTCATCCTTACTGTATTTGGTGCGGGCTCAAGCATTTGCAATGACAGGTAGATGGGAAAGGATCGCACTGATCGTGAGCTCCAGATTACTCTTAGGAACTCGAGGCTGGGAGGCGATACACGTATTGTGCTTAGGAATCCTTCGCAGAGTGCCTCATCCGGGATCCAAAGAACGGGTGATGCCAGAAAACGTGATCATATCAACTTGCTTATCATAG

Coding sequence (CDS)

ATGGGGTCAAGCTCTTGTCATGTCATGCTCTCCAGCATTGCATGGCATGGTCATCAGAGCGATTCCATGCGGCTTTTTGTGCATCCCATAAGGGAGAACCTCAGGCCAATTGAGATTACACTGAGCAGTGTGCCGAGCTCCATTTCAGTTTTCACACCTTTGGGCTGGAATATTATTAAAACACCACAATGCCAACCTACTTCTACATTTTGCAAATCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAGTTGTTGAAAGGGTTGCAGAGGGTGATGAAGCTGGAACTGCATTCATCCTTACTGTATTTGGTGCGGGCTCAAGCATTTGCAATGACAGGTAGATGGGAAAGGATCGCACTGATCGTGAGCTCCAGATTACTCTTAGGAACTCGAGGCTGGGAGGCGATACACGTATTGTGCTTAGGAATCCTTCGCAGAGTGCCTCATCCGGGATCCAAAGAACGGGTGATGCCAGAAAACGTGATCATATCAACTTGCTTATCATAG

Protein sequence

MGSSSCHVMLSSIAWHGHQSDSMRLFVHPIRENLRPIEITLSSVPSSISVFTPLGWNIIKTPQCQPTSTFCKSLLGVCAIHGDLKLLKGLQRVMKLELHSSLLYLVRAQAFAMTGRWERIALIVSSRLLLGTRGWEAIHVLCLGILRRVPHPGSKERVMPENVIISTCLS

Homology

[Close]

BLAST of CmaCh15G006370 vs. TrEMBL
Match: A0A0A0KIE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344300 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-10
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 57  NIIKTPQCQPTSTFCKSLLGVCAIHGDLKLL-KGLQRVMKLELHSSLLYLVRAQAFAMTG 116
           NIIKT   QPTSTF  SLLGVCAIHGDLK++ K  + +MKLE  SSL Y V AQA+AM  
Sbjct: 188 NIIKTTLYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSSLPYSVLAQAYAMRC 247

Query: 117 RWERIALI 124
           +WE +  +
Sbjct: 248 QWESMVRV 255

[Close]

BLAST of CmaCh15G006370 vs. TrEMBL
Match: A0A0R0JM00_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G120100 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 57  NIIKTPQCQPTSTFCKSLLGVCAIHGDLKLLKGL-QRVMKLELHSSLLYLVRAQAFAMTG 116
           +II+T  C+ TS   +S+L  CAI+GDL++++G+ +++M  E  +SL YLV AQA+ M G
Sbjct: 481 DIIETMPCRTTSDIWRSILSACAIYGDLQIIEGVAKKIMDRESQTSLPYLVLAQAYQMRG 540

Query: 117 RWERIALIVSSRLLLGTRGW-EAIHVLCLGILRRV--------PHPGSKERVMPENVII 166
           RW+    +V  R  +  RG  E I    +GI   V         H G K+  +  N+++
Sbjct: 541 RWDS---MVRMRKAVENRGTKEFIGHSWIGIRNNVYTFASNQLQHYGGKDLYLVLNLLV 596

[Close]

BLAST of CmaCh15G006370 vs. TrEMBL
Match: A0A0B2SRT0_GLYSO (Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_018329 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 1


Query: 57  NIIKTPQCQPTSTFCKSLLGVCAIHGDLKLLKGL-QRVMKLELHSSLLYLVRAQAFAMTG 116
           +II+T  C+ TS   +S+L  CAI+GDL++++G+ +++M  E  +SL YLV AQA+ M G
Sbjct: 693 DIIETMPCRTTSDIWRSILSACAIYGDLQIIEGVAKKIMDRESQTSLPYLVLAQAYQMRG 752

Query: 117 RWERIALIVSSRLLLGTRGW-EAIHVLCLGILRRV--------PHPGSKERVMPENVII 166
           RW+    +V  R  +  RG  E I    +GI   V         H G K+  +  N+++
Sbjct: 753 RWDS---MVRMRKAVENRGTKEFIGHSWIGIRNNVYTFASNQLQHYGGKDLYLVLNLLV 808

[Close]

BLAST of CmaCh15G006370 vs. NCBI nr
Match: gi|659081917|ref|XP_008441575.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 57  NIIKTPQCQPTSTFCKSLLGVCAIHGDLKLL-KGLQRVMKLELHSSLLYLVRAQAFAMTG 116
           NIIKT   QPTSTF  SLLGVCAIHGDLK++ K  + VMKLE  SSL Y V AQA+AM  
Sbjct: 506 NIIKTTPYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWVMKLEPQSSLPYSVLAQAYAMRC 565

Query: 117 RWERIALI 124
           +WE +  +
Sbjct: 566 QWESMVRV 573

[Close]

BLAST of CmaCh15G006370 vs. NCBI nr
Match: gi|659081929|ref|XP_008441582.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 57  NIIKTPQCQPTSTFCKSLLGVCAIHGDLKLL-KGLQRVMKLELHSSLLYLVRAQAFAMTG 116
           NIIKT   QPTSTF  SLLGVCAIHGDLK++ K  + VMKLE  SSL Y V AQA+AM  
Sbjct: 432 NIIKTTPYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWVMKLEPQSSLPYSVLAQAYAMRC 491

Query: 117 RWERIALI 124
           +WE +  +
Sbjct: 492 QWESMVRV 499

[Close]

BLAST of CmaCh15G006370 vs. NCBI nr
Match: gi|449453105|ref|XP_004144299.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 6   CHVMLSSIAWHGHQSDSMRLFVHPIRENLRPIEITLSSVPSSISVFTPL 55
           C+VM+SS AWHGH  DSM LFV+ +RENL PI+ TLSSV SSISVFTP+
Sbjct: 316 CNVMISSFAWHGHWRDSMWLFVYTLRENLGPIDTTLSSVLSSISVFTPV 364

[Close]

BLAST of CmaCh15G006370 vs. NCBI nr
Match: gi|778714984|ref|XP_011657323.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 6   CHVMLSSIAWHGHQSDSMRLFVHPIRENLRPIEITLSSVPSSISVFTPL 55
           C+VM+SS AWHGH  DSM LFV+ +RENL PI+ TLSSV SSISVFTP+
Sbjct: 242 CNVMISSFAWHGHWRDSMWLFVYTLRENLGPIDTTLSSVLSSISVFTPV 290

[Close]

BLAST of CmaCh15G006370 vs. NCBI nr
Match: gi|700192297|gb|KGN47501.1| (hypothetical protein Csa_6G344300 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 8.6e-10
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 57  NIIKTPQCQPTSTFCKSLLGVCAIHGDLKLL-KGLQRVMKLELHSSLLYLVRAQAFAMTG 116
           NIIKT   QPTSTF  SLLGVCAIHGDLK++ K  + +MKLE  SSL Y V AQA+AM  
Sbjct: 188 NIIKTTLYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSSLPYSVLAQAYAMRC 247

Query: 117 RWERIALI 124
           +WE +  +
Sbjct: 248 QWESMVRV 255

The following BLAST results are available for this feature:

BLAST of CmaCh15G006370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G006370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIE7_CUCSA	6.0e-10	60.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344300 PE=4 SV=1	[more]
A0A0R0JM00_SOYBN	6.2e-07	35.29	Uncharacterized protein OS=Glycine max GN=GLYMA_06G120100 PE=4 SV=1	[more]
A0A0B2SRT0_GLYSO	6.2e-07	35.29	Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=gl...	[more]

BLAST of CmaCh15G006370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh15G006370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081917\|ref\|XP_008441575.1\|	2.9e-10	61.76	PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ...	[more]
gi\|659081929\|ref\|XP_008441582.1\|	2.9e-10	61.76	PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ...	[more]
gi\|449453105\|ref\|XP_004144299.1\|	3.8e-10	71.43	PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ...	[more]
gi\|778714984\|ref\|XP_011657323.1\|	3.8e-10	71.43	PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ...	[more]
gi\|700192297\|gb\|KGN47501.1\|	8.6e-10	60.29	hypothetical protein Csa_6G344300 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G006370.1	CmaCh15G006370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G006370	CmoCh04G025240	Cucurbita moschata (Rifu)	cmacmoB309
CmaCh15G006370	CmoCh15G006470	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G006370	Lsi08G005080	Bottle gourd (USVL1VR-Ls)	cmalsiB294
CmaCh15G006370	Cp4.1LG13g04380	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G006370	CsaV3_6G031160	Cucumber (Chinese Long) v3	cmacucB0365
CmaCh15G006370	Cla97C08G149070	Watermelon (97103) v2	cmawmbB319
CmaCh15G006370	Bhi04G001438	Wax gourd	cmawgoB0391
CmaCh15G006370	CsGy6G017740	Cucumber (Gy14) v2	cgybcmaB743
CmaCh15G006370	Carg01568	Silver-seed gourd	carcmaB1148
CmaCh15G006370	Carg15758	Silver-seed gourd	carcmaB0087

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G006370	CmaCh04G024110	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G006370	Cucurbita pepo (Zucchini)	cmacpeB318
CmaCh15G006370	Cucurbita pepo (Zucchini)	cmacpeB335
CmaCh15G006370	Melon (DHL92) v3.6.1	cmamedB307
CmaCh15G006370	Cucurbita maxima (Rimu)	cmacmaB040
CmaCh15G006370	Cucumber (Gy14) v1	cgycmaB0130
CmaCh15G006370	Cucurbita moschata (Rifu)	cmacmoB283
CmaCh15G006370	Wild cucumber (PI 183967)	cmacpiB317
CmaCh15G006370	Cucumber (Chinese Long) v2	cmacuB311
CmaCh15G006370	Melon (DHL92) v3.5.1	cmameB268
CmaCh15G006370	Watermelon (Charleston Gray)	cmawcgB273
CmaCh15G006370	Watermelon (97103) v1	cmawmB260