CmoCh15G006470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G006470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCmo_Chr15 : 3139226 .. 3141784 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATTGCTCATTACAGGATCAAGTGTTCGCTCCAGCCTATTGAAAAGCAATGCATGTTCAAGAGCTCTGTGAGAAGAATCCAGGATCTCAATCTACCCAACATGTTGACTGTCACAATCCCCATCAAGTATGTGATACATCCACTAAACTTTCGATGCTTATTTAAATAGGAAATTTGTAAACCTCGTCCATCGAGATATCGTTATGAGTTCAAAGCATGCTTAAAGAAAGATAGGCCGTATTCTATAATTTGAACAAACAAGAACAACAAACTCTGGTGATACTTTGCGTTTTTGGTTGAAGGGTCAGCTGTTTTAGTTGCCTTGCCTGATATGTAGCAGAACACAAGCTGATTCTTTATTCTTTAACTTAAATATCTTCAAATGCCTAAATTAAATGATCTGATCGAAAATGAGATGAGAACAGAACACGAAAGACAATTTGCTGACTGAAAAGTCACTTTAATGTTAATACCTTGTACTTTATTTTGGCTCTTGGCTTACTCTTGTTGGTGAGGGCTAGGATAAATTACTAGAATTTATGGAACTGATATTGTATGTCAAAGATCAAATTGTATTCAGAAAATTTTATTGAGGTGCATCAATCTCCCTTTTCCATTCATATGCGTTTTCGTTAGGATGATTTGTCTGTTTTTCTTTGAAATGCTTTGTTCTTCTCCAGTTCCCTTGCAAGCTCTGATTCCTATCACAGGTTAAATGAATAATAATAGAAAAAACTTAAGTCAGTTTTTATGTTACCGTAGCTAATGAGATGGTTTAGACTATTTTGAAAACTTCAGTAGTTAAGAAAAGAAATTAAGGTTTCATTTTTGTATTCTTGTTTTTCATTTTTTCGTTTTTGTTTCCTCTTTTTTAACAAAGAAAAATGTATCTTGTTCTTTCTTTTATTTTTATTTTTTGAATAAAATATAAACATATTTGATAACCTAAAAACTTGTGAGAGGAAAATGAAACTTTCTATAAAATGTAAACATATTTATAATATACATTAAAAATATAAAAAAATTACATGAAAATAAGTTCTTAAAATTAAATAACAAATTTTTTGTGTTATATTCGTTTTTAGATATATATTATTTATGCTTTTCATAACCGGAGATAAGAAACATGAACTTAAACCAGTTTTTTAAGATCTGTTTAATAACCATTTGGCGGCATTAAAAGAAGAATATTGTATCCTGGAACAGATGCTTGAAAGGTATATTTAGATTTGGTGATGTCAAAGGTGCACGCCATCAGGTAATGCCTGAGAAGGACATTATTTCTTGGAACTCTACGATTTCTGGTTCTGTTTCATCTGGATTTGCTAATAATGCTATGGACGTTTTTCTGGAAATGAAAAACGCTGGTTTTAGACCAAGTAAATATACCTTCTCCATTTTGCTTCCAGTGTCGTATGCTTGTCATGGTAAGCAATTTCTTGGCAGTATGGTTCGAAGTGGTGTGGATGTGTCAAGTGTGGTGCTCAGAAATTCATTGATTGATATGCAGTGAGAATTTTTGGCCTTGTTGATTACATGTTTTCCATATTTTTTAGTATGGAAAAGGTGGATGTTATCTCTTGAAGCTCTTTGATTTTGGTCTGCCACAGACCAGGCTTAAGAGTATTGGCACTATATCAGTTCTCTCTAGTAGCACTCTCCCGATCAGTTCACTGTATTAATCATGCTAAACTTGGATTAACTGAGAATGCCATTATAGTCTTCATAGATATACCTGTTAGAGGTTTGATATCATGGAACACTATGATTATGGTTCTGGTTAACAATGTGTACTTTGAAGCCTTACGCACTTTGAATAAGTTGGTCAGGGAAGGTGTACTGCCAGATAGGATAACTCTAGCTGGAGTCTCATTAGCTTGCAGTCATGCTGGTTTTGTTGAGGAAGGGATAGCCACCTTCTTTTCAATGGCATATGAACATGGAGGCGTGCCGAGGAATGAACATTGTTCTTTTGTAGTGAACTTGCTGAGTTGGGCTGGTAAATTTGAAGCAGTTATTATTATTAAAACACCAAAATGCCAATCTACTTCTACACTTTGCAAGTCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAAGTTGTTGAAAGAGTTGCAGAGAGGGTGGTGAAGCTGGAACTGCAATCATCCTTACTGTATTCGGTACGGGTCGGTGCAGGCTCAAGCATTTGCAATGAGAGGTAGATGGGAAAGGATCGCACTGATTGTGAGCTCCAGATTACTCTTAGGAACTCGAGGCTGGGAGGCGATACACGTATTATGCTTAGGAATCCTTCACAGAGTGCCTCATCCGGGTAAGTTTCTGCTGGACTTGTATATGCTTCATTTTTTTGCAGCAAATGTGATTTTATGTTAACAGATTATGCAGCTTTGTTCTGAAGTTTACTGTCTATTCTCTCTGCATTTGTGTGGGTTTGCTATAGTGGGATACCAATTGAAAGCATTCCCAAGGTCGTTTGCTGGAGCTAACTTTCGTGCAATGGAGGATGGAGTTTGGAAGAAAGCTGAAGCAGTGTGGAGAGATATGTGA

mRNA sequence

ATGTTTATTGCTCATTACAGGATCAAGTGTTCGCTCCAGCCTATTGAAAAGCAATGCATGTTCAAGAGCTCTGTGAGAAGAATCCAGGATCTCAATCTACCCAACATGTTGACTGTCACAATCCCCATCAAATGCTTGAAAGGTATATTTAGATTTGGTGATGTCAAAGGTGCACGCCATCAGGTAATGCCTGAGAAGGACATTATTTCTTGGAACTCTACGATTTCTGGTTCTGTTTCATCTGGATTTGCTAATAATGCTATGGACGTTTTTCTGGAAATGAAAAACGCTGGTTTTAGACCAAGTAAATATACCTTCTCCATTTTGCTTCCAGTGTCGTATGCTTGTCATGGTAAGCAATTTCTTGGCAGTATGGTTCGAAGTGGTGTGGATGTGTCAAGTGTGGTGCTCAGAAATTCATTGATTGATATGCAACCAGGCTTAAGAGTATTGGCACTATATCAGTTCTCTCTAGTAGCACTCTCCCGATCAGTTCACTGTATTAATCATGCTAAACTTGGATTAACTGAGAATGCCATTATAGTCTTCATAGATATACCTGTTAGAGGTTTGATATCATGGAACACTATGATTATGGTTCTGGTTAACAATGTGTACTTTGAAGCCTTACGCACTTTGAATAAGTTGGTCAGGGAAGGTGTACTGCCAGATAGGATAACTCTAGCTGGAGTCTCATTAGCTTGCAGTCATGCTGGTTTTGTTGAGGAAGGGATAGCCACCTTCTTTTCAATGGCATATGAACATGGAGGCGTGCCGAGGAATGAACATTGTTCTTTTGTAGTGAACTTGCTGAGTTGGGCTGGTAAATTTGAAGCAGTTATTATTATTAAAACACCAAAATGCCAATCTACTTCTACACTTTGCAAGTCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAAGTTGTTGAAAGAGTTGCAGAGAGGGTGGTGAAGCTGGAACTGCAATCATCCTTACTGTATTCGATTATGCAGCTTTGTTCTGAAGTTTACTGTCTATTCTCTCTGCATTTGTGTGGGTTTGCTATAGTGGGATACCAATTGAAAGCATTCCCAAGGTCGTTTGCTGGAGCTAACTTTCGTGCAATGGAGGATGGAGTTTGGAAGAAAGCTGAAGCAGTGTGGAGAGATATGTGA

Coding sequence (CDS)

ATGTTTATTGCTCATTACAGGATCAAGTGTTCGCTCCAGCCTATTGAAAAGCAATGCATGTTCAAGAGCTCTGTGAGAAGAATCCAGGATCTCAATCTACCCAACATGTTGACTGTCACAATCCCCATCAAATGCTTGAAAGGTATATTTAGATTTGGTGATGTCAAAGGTGCACGCCATCAGGTAATGCCTGAGAAGGACATTATTTCTTGGAACTCTACGATTTCTGGTTCTGTTTCATCTGGATTTGCTAATAATGCTATGGACGTTTTTCTGGAAATGAAAAACGCTGGTTTTAGACCAAGTAAATATACCTTCTCCATTTTGCTTCCAGTGTCGTATGCTTGTCATGGTAAGCAATTTCTTGGCAGTATGGTTCGAAGTGGTGTGGATGTGTCAAGTGTGGTGCTCAGAAATTCATTGATTGATATGCAACCAGGCTTAAGAGTATTGGCACTATATCAGTTCTCTCTAGTAGCACTCTCCCGATCAGTTCACTGTATTAATCATGCTAAACTTGGATTAACTGAGAATGCCATTATAGTCTTCATAGATATACCTGTTAGAGGTTTGATATCATGGAACACTATGATTATGGTTCTGGTTAACAATGTGTACTTTGAAGCCTTACGCACTTTGAATAAGTTGGTCAGGGAAGGTGTACTGCCAGATAGGATAACTCTAGCTGGAGTCTCATTAGCTTGCAGTCATGCTGGTTTTGTTGAGGAAGGGATAGCCACCTTCTTTTCAATGGCATATGAACATGGAGGCGTGCCGAGGAATGAACATTGTTCTTTTGTAGTGAACTTGCTGAGTTGGGCTGGTAAATTTGAAGCAGTTATTATTATTAAAACACCAAAATGCCAATCTACTTCTACACTTTGCAAGTCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAAGTTGTTGAAAGAGTTGCAGAGAGGGTGGTGAAGCTGGAACTGCAATCATCCTTACTGTATTCGATTATGCAGCTTTGTTCTGAAGTTTACTGTCTATTCTCTCTGCATTTGTGTGGGTTTGCTATAGTGGGATACCAATTGAAAGCATTCCCAAGGTCGTTTGCTGGAGCTAACTTTCGTGCAATGGAGGATGGAGTTTGGAAGAAAGCTGAAGCAGTGTGGAGAGATATGTGA
Homology
[Close]
BLAST of CmoCh15G006470 vs. Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-33
Identity = 106/340 (31.18%), Postives = 176/340 (51.76%), Query Frame = 1 

Query: 2   FIAHYRIKCSLQPIEKQCMFKSSVRRIQDLNLPNMLTVTIPIKCLKGIFRFGDVKGARHQ 61
           F+++  + CS+     +C    S +R  D     +  + I    + G  + GD++ A   
Sbjct: 210 FLSNVVLSCSIIDAYAKCGQMESAKRCFDEM--TVKDIHIWTTLISGYAKLGDMEAAEKL 269

Query: 62  V--MPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLPVSYAC--- 121
              MPEK+ +SW + I+G V  G  N A+D+F +M   G +P ++TFS  L  S +    
Sbjct: 270 FCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASL 329

Query: 122 -HGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGL 181
            HGK+  G M+R+ V  +++V+ +SLIDM                         ++K G 
Sbjct: 330 RHGKEIHGYMIRTNVRPNAIVI-SSLIDM-------------------------YSKSGS 389

Query: 182 TENAIIVF-IDIPVRGLISWNTMIMVLVNN-VYFEALRTLNKLVREGVLPDRITLAGVSL 241
            E +  VF I       + WNTMI  L  + +  +ALR L+ +++  V P+R TL  +  
Sbjct: 390 LEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILN 449

Query: 242 ACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTS 301
           ACSH+G VEEG+  F SM  +HG VP  EH + +++LL  AG F E +  I+    +   
Sbjct: 450 ACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDK 509

Query: 302 TLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIM 333
            +  ++LGVC IHG+ ++ ++ A+ ++KL+ +SS  Y ++
Sbjct: 510 HIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILL 521

[Close]
BLAST of CmoCh15G006470 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.9e-26
Identity = 90/290 (31.03%), Postives = 144/290 (49.66%), Query Frame = 1 

Query: 53  GDVKGAR--HQVMPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILL 112
           G+V+ AR     M E+DI+SWN  I G    GF N+A+ +F ++   G +P     +++ 
Sbjct: 206 GNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG-KPKPDEITVVA 265

Query: 113 PVSY-----ACHGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSV 172
            +S      A    +++   V+S     +V +   LIDM                     
Sbjct: 266 ALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDM--------------------- 325

Query: 173 HCINHAKLGLTENAIIVFIDIPVRGLISWNTMIMVLVNNVYFE-ALRTLNKLVR-EGVLP 232
               ++K G  E A++VF D P + +++WN MI     + Y + ALR  N++    G+ P
Sbjct: 326 ----YSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQP 385

Query: 233 DRITLAGVSLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKFE-AVII 292
             IT  G   AC+HAG V EGI  F SM  E+G  P+ EH   +V+LL  AG+ + A   
Sbjct: 386 TDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYET 445

Query: 293 IKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIM 333
           IK     + S L  S+LG C +HGD  + + +AE ++ L +++S +Y ++
Sbjct: 446 IKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469

[Close]
BLAST of CmoCh15G006470 vs. Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.7e-26
Identity = 82/272 (30.15%), Postives = 138/272 (50.74%), Query Frame = 1 

Query: 67  DIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLPVSYACHGKQFLGSMV 126
           D I WNS I G   +  ++ A+++F  MK AGF   + T + +L    AC G   L   +
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR---ACTGLALLELGM 283

Query: 127 RSGVDV----SSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTENAIIV 186
           ++ V +      ++L N+L+DM                         + K G  E+A+ V
Sbjct: 284 QAHVHIVKYDQDLILNNALVDM-------------------------YCKCGSLEDALRV 343

Query: 187 FIDIPVRGLISWNTMIMVLVNNVYF-EALRTLNKLVREGVLPDRITLAGVSLACSHAGFV 246
           F  +  R +I+W+TMI  L  N Y  EAL+   ++   G  P+ IT+ GV  ACSHAG +
Sbjct: 344 FNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLL 403

Query: 247 EEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCKSLLG 306
           E+G   F SM   +G  P  EH   +++LL  AGK  +AV ++   +C+  +   ++LLG
Sbjct: 404 EDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLG 463

Query: 307 VCAIHGDLKVVERVAERVVKLELQSSLLYSIM 333
            C +  ++ + E  A++V+ L+ + +  Y+++
Sbjct: 464 ACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467

[Close]
BLAST of CmoCh15G006470 vs. Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-25
Identity = 82/265 (30.94%), Postives = 137/265 (51.70%), Query Frame = 1 

Query: 63  MPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLP----VSYACHG 122
           M EK+I+SW   ISG   +GF    + +F  MK  GF P  Y FS  +     +   C+G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 123 KQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTEN 182
           +Q+   +++ G D SS+   N+LI M                         +AK G+ E 
Sbjct: 437 QQYHAQLLKIGFD-SSLSAGNALITM-------------------------YAKCGVVEE 496

Query: 183 AIIVFIDIPVRGLISWNTMIMVLVNNVY-FEALRTLNKLVREGVLPDRITLAGVSLACSH 242
           A  VF  +P    +SWN +I  L  + +  EA+    +++++G+ PDRITL  V  ACSH
Sbjct: 497 ARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 556

Query: 243 AGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCK 302
           AG V++G   F SM   +   P  +H + +++LL  +GKF +A  +I++   + T+ + +
Sbjct: 557 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 615

Query: 303 SLLGVCAIHGDLKVVERVAERVVKL 322
           +LL  C +HG++++    A+++  L
Sbjct: 617 ALLSGCRVHGNMELGIIAADKLFGL 615

[Close]
BLAST of CmoCh15G006470 vs. Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-25
Identity = 76/266 (28.57%), Postives = 134/266 (50.38%), Query Frame = 1 

Query: 63  MPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLPVSYACH----G 122
           +P++  +SW + ISG V  G     + +F +M+ +  R  + TF+ +L  S +      G
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 123 KQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTEN 182
           KQ    ++RSG ++ +V   + L+DM                         +AK G  ++
Sbjct: 472 KQLHAFIIRSG-NLENVFSGSGLVDM-------------------------YAKCGSIKD 531

Query: 183 AIIVFIDIPVRGLISWNTMIMVLVNNVYFEA-LRTLNKLVREGVLPDRITLAGVSLACSH 242
           A+ VF ++P R  +SWN +I    +N   EA +    K++  G+ PD +++ GV  ACSH
Sbjct: 532 AVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSH 591

Query: 243 AGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCK 302
            GFVE+G   F +M+  +G  P+ +H + +++LL   G+F EA  ++     +    +  
Sbjct: 592 CGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWS 651

Query: 303 SLLGVCAIHGDLKVVERVAERVVKLE 323
           S+L  C IH +  + ER AE++  +E
Sbjct: 652 SVLNACRIHKNQSLAERAAEKLFSME 651

[Close]
BLAST of CmoCh15G006470 vs. TrEMBL
Match: A0A0A0KIE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344300 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 128/238 (53.78%), Postives = 154/238 (64.71%), Query Frame = 1 

Query: 105 TFSILLPVSYACHGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRS 164
           + S+  PV     G Q    +++ G   S V++ +SL+DM                    
Sbjct: 39  SISVFTPVEL---GSQIHNLVLKLGFQ-SDVIVTSSLVDM-------------------- 98

Query: 165 VHCINHAKLGLTENAIIVFIDIPVRGLISWNTMIMVLVNN-VYFEALRTLNKLVREGVLP 224
                +AK+G  ++A+ VFID+P R LISWNTMIM LV+N  YFEAL T NKLV EGVLP
Sbjct: 99  -----YAKVGSIDDAMKVFIDMPFRDLISWNTMIMGLVDNGKYFEALHTFNKLVMEGVLP 158

Query: 225 DRITLAGVSLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVII 284
           DRITLAGV LACS+AG VEEG+  F  M YEHG VPRNEH S VVNLLS AGKF EAV I
Sbjct: 159 DRITLAGVLLACSYAGLVEEGLVIFSKMTYEHGVVPRNEHYSCVVNLLSRAGKFEEAVNI 218

Query: 285 IKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIMQLCSEVYC 341
           IKT   Q TST   SLLGVCAIHGDLK++E+VAE ++KLE QSSL YS++     + C
Sbjct: 219 IKTTLYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSSLPYSVLAQAYAMRC 247

[Close]
BLAST of CmoCh15G006470 vs. TrEMBL
Match: F6GZT9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14970 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 117/326 (35.89%), Postives = 172/326 (52.76%), Query Frame = 1 

Query: 52  FGDVKGARH--QVMPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSIL 111
           FG+++ AR     MP++D++SWN+ ISG VS G  ++A   F EM+ AG RPS +T+S L
Sbjct: 61  FGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTL 120

Query: 112 LPVSYACHGKQFLGSMVRSGVDVSSV--------VLRNSLIDMQPGLR--------VLAL 171
           L  S     + +    V     +SS          L+  ++ ++  LR        VL+ 
Sbjct: 121 LEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSA 180

Query: 172 YQFSL-VALSRSVHCI------------------NHAKLGLTENAIIVFIDIPVRGLISW 231
               L V     +H +                   +AK GL ++A+  F  I  R LISW
Sbjct: 181 VSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISW 240

Query: 232 NTMIMVLV-NNVYFEALRTLNKLVREGVLPDRITLAGVSLACSHAGFVEEGIATFFSMAY 291
           NTMIM L  N    +AL    +L+  G  PD ITLAGV LAC+  G V+EG++ F SM  
Sbjct: 241 NTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEK 300

Query: 292 EHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCKSLLGVCAIHGDLKVVE 339
           E+G +P  EH + +V+++S  GK  EA+ I++    + +  +  SLL  C I+GDL+  E
Sbjct: 301 EYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTE 360

[Close]
BLAST of CmoCh15G006470 vs. TrEMBL
Match: A0A0A0K215_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062860 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.2e-35
Identity = 101/293 (34.47%), Postives = 160/293 (54.61%), Query Frame = 1 

Query: 46  LKGIFRFGDVKGAR---HQVMPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPS 105
           + G  ++GD+  A    HQ MPEK+ +SW++ ISG   +   + A+D F +M   G  P 
Sbjct: 268 VSGYAKWGDMNSASELFHQ-MPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPE 327

Query: 106 KYTFSILL----PVSYACHGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSL 165
           +YTFS  L     ++   HGKQ  G ++R+    +++V+ +SLIDM           +S 
Sbjct: 328 QYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVV-SSLIDM-----------YSK 387

Query: 166 VALSRSVHCINHAKLGLTENAIIVFIDIPVRGLISWNTMIMVLVNNVYFE-ALRTLNKLV 225
             +  +  C+ H  +G  ++ ++            WNTMI  L  N + E A++  N +V
Sbjct: 388 CGMLEASCCVFHL-MGNKQDVVV------------WNTMISALAQNGHGEKAMQMFNDMV 447

Query: 226 REGVLPDRITLAGVSLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF 285
             G+ PDRIT   +  ACSH+G V+EG+  F +M Y+HG  P  EH S +++LL  AG F
Sbjct: 448 ESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCF 507

Query: 286 -EAVIIIKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLY 330
            E V  ++   C+    +  +LLGVC IH ++++  +VAERV++L+ QSS  Y
Sbjct: 508 VELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAY 534

[Close]
BLAST of CmoCh15G006470 vs. TrEMBL
Match: B9S2P5_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0559780 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.3e-35
Identity = 103/266 (38.72%), Postives = 144/266 (54.14%), Query Frame = 1 

Query: 72  NSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLP---VSYACHGKQFLGSMVRS 131
           NS IS     GF  NA+ +F+       RP+++T S +L    +     G QF  S+V+ 
Sbjct: 210 NSMISSYAGHGFGENALQLFVLALRENIRPTEFTISSVLSFISIFPPEQGTQFHSSVVKL 269

Query: 132 GVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTENAIIVFIDIPV 191
           G ++ ++V  +SL+ M                         + K G  + A+ +F  + V
Sbjct: 270 GFELDAIVA-SSLVQM-------------------------YTKFGFIDYAMDIFKSMTV 329

Query: 192 RGLISWNTMIMVLVNNV-YFEALRTLNKLVREGVLPDRITLAGVSLACSHAGFVEEGIAT 251
           R LISWNTMIM L  N    EAL    KL+  G  PDRITLAGV LACS+ GF+EEG+  
Sbjct: 330 RDLISWNTMIMGLTQNGRVIEALDAFKKLLNRGPPPDRITLAGVLLACSYGGFIEEGMTI 389

Query: 252 FFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCKSLLGVCAIHG 311
           F SM   +G +P NEH + +VNLL  AG   EA+ +I+    +  S  C+S+L  CAI G
Sbjct: 390 FSSMQGSYGIIPSNEHYASIVNLLCQAGWLDEAMSMIEAMPSEPNSMTCRSILHACAIRG 449

Query: 312 DLKVVERVAERVVKLELQSSLLYSIM 333
           DLK++E VAER+V +   SSL Y ++
Sbjct: 450 DLKLMEGVAERLVDIGSLSSLPYLVL 449

[Close]
BLAST of CmoCh15G006470 vs. TrEMBL
Match: B9H7L3_POPTR (Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0005s20740g PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 101/272 (37.13%), Postives = 152/272 (55.88%), Query Frame = 1 

Query: 72  NSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLPVSYAC---HGKQFLGSMVRS 131
           NS IS     GF  + + +F+       RP+++T S +L  +       G QF    V+S
Sbjct: 317 NSMISSYARCGFREDGLRLFVLTLKKDIRPTEFTLSSVLHSTSILKLEQGTQFHSLAVKS 376

Query: 132 GVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTENAIIVFIDIPV 191
           G+++ ++V  +SL++M                         ++K G  + +I +F  +  
Sbjct: 377 GLELDAIVA-SSLVEM-------------------------YSKFGFIDCSIKIFNKMVA 436

Query: 192 RGLISWNTMIMVLVNNV-YFEALRTLNKLVREGVLPDRITLAGVSLACSHAGFVEEGIAT 251
           R LI+WNTMIM L +N   FEAL+T  +L+R G+ PDRITLAGV LACS  GF+ EG+  
Sbjct: 437 RDLIAWNTMIMGLTHNGRVFEALQTFKELIRTGLPPDRITLAGVLLACSFGGFISEGMTV 496

Query: 252 FFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCKSLLGVCAIHG 311
           F SM   +G  P NEH +  V+LL  AG+  EA+ + ++   +  S + +S+L  C IHG
Sbjct: 497 FSSMEERYGVKPSNEHYACFVDLLCQAGRLDEALYVAESMPYEPVSLIWESILHACLIHG 556

Query: 312 DLKVVERVAERVVKLELQSSLLYSIMQLCSEV 339
           DLK+ ERVAER+++LE QSSL Y ++    E+
Sbjct: 557 DLKLSERVAERLMELEPQSSLPYLVLARMFEI 562

[Close]
BLAST of CmoCh15G006470 vs. TAIR10
Match: AT2G21090.1 (AT2G21090.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 8.3e-35
Identity = 106/340 (31.18%), Postives = 176/340 (51.76%), Query Frame = 1 

Query: 2   FIAHYRIKCSLQPIEKQCMFKSSVRRIQDLNLPNMLTVTIPIKCLKGIFRFGDVKGARHQ 61
           F+++  + CS+     +C    S +R  D     +  + I    + G  + GD++ A   
Sbjct: 210 FLSNVVLSCSIIDAYAKCGQMESAKRCFDEM--TVKDIHIWTTLISGYAKLGDMEAAEKL 269

Query: 62  V--MPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLPVSYAC--- 121
              MPEK+ +SW + I+G V  G  N A+D+F +M   G +P ++TFS  L  S +    
Sbjct: 270 FCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASL 329

Query: 122 -HGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGL 181
            HGK+  G M+R+ V  +++V+ +SLIDM                         ++K G 
Sbjct: 330 RHGKEIHGYMIRTNVRPNAIVI-SSLIDM-------------------------YSKSGS 389

Query: 182 TENAIIVF-IDIPVRGLISWNTMIMVLVNN-VYFEALRTLNKLVREGVLPDRITLAGVSL 241
            E +  VF I       + WNTMI  L  + +  +ALR L+ +++  V P+R TL  +  
Sbjct: 390 LEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILN 449

Query: 242 ACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTS 301
           ACSH+G VEEG+  F SM  +HG VP  EH + +++LL  AG F E +  I+    +   
Sbjct: 450 ACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDK 509

Query: 302 TLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIM 333
            +  ++LGVC IHG+ ++ ++ A+ ++KL+ +SS  Y ++
Sbjct: 510 HIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILL 521

[Close]
BLAST of CmoCh15G006470 vs. TAIR10
Match: AT4G37380.1 (AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-27
Identity = 90/290 (31.03%), Postives = 144/290 (49.66%), Query Frame = 1 

Query: 53  GDVKGAR--HQVMPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILL 112
           G+V+ AR     M E+DI+SWN  I G    GF N+A+ +F ++   G +P     +++ 
Sbjct: 206 GNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG-KPKPDEITVVA 265

Query: 113 PVSY-----ACHGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSV 172
            +S      A    +++   V+S     +V +   LIDM                     
Sbjct: 266 ALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDM--------------------- 325

Query: 173 HCINHAKLGLTENAIIVFIDIPVRGLISWNTMIMVLVNNVYFE-ALRTLNKLVR-EGVLP 232
               ++K G  E A++VF D P + +++WN MI     + Y + ALR  N++    G+ P
Sbjct: 326 ----YSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQP 385

Query: 233 DRITLAGVSLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKFE-AVII 292
             IT  G   AC+HAG V EGI  F SM  E+G  P+ EH   +V+LL  AG+ + A   
Sbjct: 386 TDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYET 445

Query: 293 IKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIM 333
           IK     + S L  S+LG C +HGD  + + +AE ++ L +++S +Y ++
Sbjct: 446 IKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469

[Close]
BLAST of CmoCh15G006470 vs. TAIR10
Match: AT2G03880.1 (AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-27
Identity = 82/272 (30.15%), Postives = 138/272 (50.74%), Query Frame = 1 

Query: 67  DIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLPVSYACHGKQFLGSMV 126
           D I WNS I G   +  ++ A+++F  MK AGF   + T + +L    AC G   L   +
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLR---ACTGLALLELGM 283

Query: 127 RSGVDV----SSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTENAIIV 186
           ++ V +      ++L N+L+DM                         + K G  E+A+ V
Sbjct: 284 QAHVHIVKYDQDLILNNALVDM-------------------------YCKCGSLEDALRV 343

Query: 187 FIDIPVRGLISWNTMIMVLVNNVYF-EALRTLNKLVREGVLPDRITLAGVSLACSHAGFV 246
           F  +  R +I+W+TMI  L  N Y  EAL+   ++   G  P+ IT+ GV  ACSHAG +
Sbjct: 344 FNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLL 403

Query: 247 EEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCKSLLG 306
           E+G   F SM   +G  P  EH   +++LL  AGK  +AV ++   +C+  +   ++LLG
Sbjct: 404 EDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLG 463

Query: 307 VCAIHGDLKVVERVAERVVKLELQSSLLYSIM 333
            C +  ++ + E  A++V+ L+ + +  Y+++
Sbjct: 464 ACRVQRNMVLAEYAAKKVIALDPEDAGTYTLL 467

[Close]
BLAST of CmoCh15G006470 vs. TAIR10
Match: AT1G25360.1 (AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 119.0 bits (297), Expect = 6.4e-27
Identity = 82/265 (30.94%), Postives = 137/265 (51.70%), Query Frame = 1 

Query: 63  MPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLP----VSYACHG 122
           M EK+I+SW   ISG   +GF    + +F  MK  GF P  Y FS  +     +   C+G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 123 KQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTEN 182
           +Q+   +++ G D SS+   N+LI M                         +AK G+ E 
Sbjct: 437 QQYHAQLLKIGFD-SSLSAGNALITM-------------------------YAKCGVVEE 496

Query: 183 AIIVFIDIPVRGLISWNTMIMVLVNNVY-FEALRTLNKLVREGVLPDRITLAGVSLACSH 242
           A  VF  +P    +SWN +I  L  + +  EA+    +++++G+ PDRITL  V  ACSH
Sbjct: 497 ARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 556

Query: 243 AGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCK 302
           AG V++G   F SM   +   P  +H + +++LL  +GKF +A  +I++   + T+ + +
Sbjct: 557 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 615

Query: 303 SLLGVCAIHGDLKVVERVAERVVKL 322
           +LL  C +HG++++    A+++  L
Sbjct: 617 ALLSGCRVHGNMELGIIAADKLFGL 615

[Close]
BLAST of CmoCh15G006470 vs. TAIR10
Match: AT3G02010.1 (AT3G02010.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 118.6 bits (296), Expect = 8.4e-27
Identity = 76/266 (28.57%), Postives = 134/266 (50.38%), Query Frame = 1 

Query: 63  MPEKDIISWNSTISGSVSSGFANNAMDVFLEMKNAGFRPSKYTFSILLPVSYACH----G 122
           +P++  +SW + ISG V  G     + +F +M+ +  R  + TF+ +L  S +      G
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 123 KQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLTEN 182
           KQ    ++RSG ++ +V   + L+DM                         +AK G  ++
Sbjct: 472 KQLHAFIIRSG-NLENVFSGSGLVDM-------------------------YAKCGSIKD 531

Query: 183 AIIVFIDIPVRGLISWNTMIMVLVNNVYFEA-LRTLNKLVREGVLPDRITLAGVSLACSH 242
           A+ VF ++P R  +SWN +I    +N   EA +    K++  G+ PD +++ GV  ACSH
Sbjct: 532 AVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSH 591

Query: 243 AGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTLCK 302
            GFVE+G   F +M+  +G  P+ +H + +++LL   G+F EA  ++     +    +  
Sbjct: 592 CGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWS 651

Query: 303 SLLGVCAIHGDLKVVERVAERVVKLE 323
           S+L  C IH +  + ER AE++  +E
Sbjct: 652 SVLNACRIHKNQSLAERAAEKLFSME 651

[Close]
BLAST of CmoCh15G006470 vs. NCBI nr
Match: gi|659081929|ref|XP_008441582.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51
Identity = 120/189 (63.49%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 154 YQFSLVALSRSVHCINHAKLGLTENAIIVFIDIPVRGLISWNTMIMVLVNN-VYFEALRT 213
           ++F ++  S  V    +AK+G  ++A+ VFID+P R LISWNTMIM LV+N  YFEAL T
Sbjct: 305 FEFDVIVASSLVDM--YAKVGSIDDAMKVFIDMPFRDLISWNTMIMGLVDNGKYFEALHT 364

Query: 214 LNKLVREGVLPDRITLAGVSLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLS 273
            NKLV EGVLPDRITLAGV LACS+AGFVEEG+  F +M YEHG VP NEH S VVNLLS
Sbjct: 365 FNKLVMEGVLPDRITLAGVLLACSYAGFVEEGLGIFSTMTYEHGVVPSNEHYSCVVNLLS 424

Query: 274 WAGKF-EAVIIIKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSI 333
            AGKF EAV IIKT   Q TST   SLLGVCAIHGDLK++E+VAE V+KLE QSSL YS+
Sbjct: 425 RAGKFEEAVNIIKTTPYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWVMKLEPQSSLPYSV 484

Query: 334 MQLCSEVYC 341
           +     + C
Sbjct: 485 LAQAYAMRC 491

[Close]
BLAST of CmoCh15G006470 vs. NCBI nr
Match: gi|659081917|ref|XP_008441575.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 4.6e-51
Identity = 120/189 (63.49%), Postives = 141/189 (74.60%), Query Frame = 1 

Query: 154 YQFSLVALSRSVHCINHAKLGLTENAIIVFIDIPVRGLISWNTMIMVLVNN-VYFEALRT 213
           ++F ++  S  V    +AK+G  ++A+ VFID+P R LISWNTMIM LV+N  YFEAL T
Sbjct: 379 FEFDVIVASSLVDM--YAKVGSIDDAMKVFIDMPFRDLISWNTMIMGLVDNGKYFEALHT 438

Query: 214 LNKLVREGVLPDRITLAGVSLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLS 273
            NKLV EGVLPDRITLAGV LACS+AGFVEEG+  F +M YEHG VP NEH S VVNLLS
Sbjct: 439 FNKLVMEGVLPDRITLAGVLLACSYAGFVEEGLGIFSTMTYEHGVVPSNEHYSCVVNLLS 498

Query: 274 WAGKF-EAVIIIKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSI 333
            AGKF EAV IIKT   Q TST   SLLGVCAIHGDLK++E+VAE V+KLE QSSL YS+
Sbjct: 499 RAGKFEEAVNIIKTTPYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWVMKLEPQSSLPYSV 558

Query: 334 MQLCSEVYC 341
           +     + C
Sbjct: 559 LAQAYAMRC 565

[Close]
BLAST of CmoCh15G006470 vs. NCBI nr
Match: gi|449453105|ref|XP_004144299.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 138/286 (48.25%), Postives = 171/286 (59.79%), Query Frame = 1 

Query: 66  KDIISWNSTISGSVSSGFA-----NNAMDVFLEMKNAGFRPSKYTFSILLPVSYACHGKQ 125
           +D   W+  +   + S FA      ++M +F+        P   T S +L  S +     
Sbjct: 306 EDTNQWDPVLCNVMISSFAWHGHWRDSMWLFVYTLRENLGPIDTTLSSVLS-SISVFTPV 365

Query: 126 FLGSMVRSGV----DVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLT 185
            LGS + + V      S V++ +SL+DM                         +AK+G  
Sbjct: 366 ELGSQIHNLVLKLGFQSDVIVTSSLVDM-------------------------YAKVGSI 425

Query: 186 ENAIIVFIDIPVRGLISWNTMIMVLVNN-VYFEALRTLNKLVREGVLPDRITLAGVSLAC 245
           ++A+ VFID+P R LISWNTMIM LV+N  YFEAL T NKLV EGVLPDRITLAGV LAC
Sbjct: 426 DDAMKVFIDMPFRDLISWNTMIMGLVDNGKYFEALHTFNKLVMEGVLPDRITLAGVLLAC 485

Query: 246 SHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTL 305
           S+AG VEEG+  F  M YEHG VPRNEH S VVNLLS AGKF EAV IIKT   Q TST 
Sbjct: 486 SYAGLVEEGLVIFSKMTYEHGVVPRNEHYSCVVNLLSRAGKFEEAVNIIKTTLYQPTSTF 545

Query: 306 CKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIMQLCSEVYC 341
             SLLGVCAIHGDLK++E+VAE ++KLE QSSL YS++     + C
Sbjct: 546 WTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSSLPYSVLAQAYAMRC 565

[Close]
BLAST of CmoCh15G006470 vs. NCBI nr
Match: gi|778714984|ref|XP_011657323.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 138/286 (48.25%), Postives = 171/286 (59.79%), Query Frame = 1 

Query: 66  KDIISWNSTISGSVSSGFA-----NNAMDVFLEMKNAGFRPSKYTFSILLPVSYACHGKQ 125
           +D   W+  +   + S FA      ++M +F+        P   T S +L  S +     
Sbjct: 232 EDTNQWDPVLCNVMISSFAWHGHWRDSMWLFVYTLRENLGPIDTTLSSVLS-SISVFTPV 291

Query: 126 FLGSMVRSGV----DVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRSVHCINHAKLGLT 185
            LGS + + V      S V++ +SL+DM                         +AK+G  
Sbjct: 292 ELGSQIHNLVLKLGFQSDVIVTSSLVDM-------------------------YAKVGSI 351

Query: 186 ENAIIVFIDIPVRGLISWNTMIMVLVNN-VYFEALRTLNKLVREGVLPDRITLAGVSLAC 245
           ++A+ VFID+P R LISWNTMIM LV+N  YFEAL T NKLV EGVLPDRITLAGV LAC
Sbjct: 352 DDAMKVFIDMPFRDLISWNTMIMGLVDNGKYFEALHTFNKLVMEGVLPDRITLAGVLLAC 411

Query: 246 SHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVIIIKTPKCQSTSTL 305
           S+AG VEEG+  F  M YEHG VPRNEH S VVNLLS AGKF EAV IIKT   Q TST 
Sbjct: 412 SYAGLVEEGLVIFSKMTYEHGVVPRNEHYSCVVNLLSRAGKFEEAVNIIKTTLYQPTSTF 471

Query: 306 CKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIMQLCSEVYC 341
             SLLGVCAIHGDLK++E+VAE ++KLE QSSL YS++     + C
Sbjct: 472 WTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSSLPYSVLAQAYAMRC 491

[Close]
BLAST of CmoCh15G006470 vs. NCBI nr
Match: gi|700192297|gb|KGN47501.1| (hypothetical protein Csa_6G344300 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 2.3e-50
Identity = 128/238 (53.78%), Postives = 154/238 (64.71%), Query Frame = 1 

Query: 105 TFSILLPVSYACHGKQFLGSMVRSGVDVSSVVLRNSLIDMQPGLRVLALYQFSLVALSRS 164
           + S+  PV     G Q    +++ G   S V++ +SL+DM                    
Sbjct: 39  SISVFTPVEL---GSQIHNLVLKLGFQ-SDVIVTSSLVDM-------------------- 98

Query: 165 VHCINHAKLGLTENAIIVFIDIPVRGLISWNTMIMVLVNN-VYFEALRTLNKLVREGVLP 224
                +AK+G  ++A+ VFID+P R LISWNTMIM LV+N  YFEAL T NKLV EGVLP
Sbjct: 99  -----YAKVGSIDDAMKVFIDMPFRDLISWNTMIMGLVDNGKYFEALHTFNKLVMEGVLP 158

Query: 225 DRITLAGVSLACSHAGFVEEGIATFFSMAYEHGGVPRNEHCSFVVNLLSWAGKF-EAVII 284
           DRITLAGV LACS+AG VEEG+  F  M YEHG VPRNEH S VVNLLS AGKF EAV I
Sbjct: 159 DRITLAGVLLACSYAGLVEEGLVIFSKMTYEHGVVPRNEHYSCVVNLLSRAGKFEEAVNI 218

Query: 285 IKTPKCQSTSTLCKSLLGVCAIHGDLKVVERVAERVVKLELQSSLLYSIMQLCSEVYC 341
           IKT   Q TST   SLLGVCAIHGDLK++E+VAE ++KLE QSSL YS++     + C
Sbjct: 219 IKTTLYQPTSTFWTSLLGVCAIHGDLKIIEKVAEWMMKLEPQSSLPYSVLAQAYAMRC 247

The following BLAST results are available for this feature:
BLAST of CmoCh15G006470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP167_ARATH1.5e-3331.18Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN... [more]
PP354_ARATH3.9e-2631.03Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
PP147_ARATH6.7e-2630.15Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop... [more]
PPR57_ARATH1.1e-2530.94Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN... [more]
PP206_ARATH1.5e-2528.57Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis th... [more]
BLAST of CmoCh15G006470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIE7_CUCSA1.6e-5053.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G344300 PE=4 SV=1[more]
F6GZT9_VITVI2.2e-3635.89Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14970 PE=4 SV=... [more]
A0A0A0K215_CUCSA3.2e-3534.47Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062860 PE=4 SV=1[more]
B9S2P5_RICCO9.3e-3538.72Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
B9H7L3_POPTR1.6e-3437.13Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POP... [more]
BLAST of CmoCh15G006470 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21090.18.3e-3531.18 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT4G37380.12.2e-2731.03 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G03880.13.7e-2730.15 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G25360.16.4e-2730.94 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G02010.18.4e-2728.57 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CmoCh15G006470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081929|ref|XP_008441582.1|4.6e-5163.49PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ... [more]
gi|659081917|ref|XP_008441575.1|4.6e-5163.49PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ... [more]
gi|449453105|ref|XP_004144299.1|1.3e-5048.25PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ... [more]
gi|778714984|ref|XP_011657323.1|1.3e-5048.25PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial ... [more]
gi|700192297|gb|KGN47501.1|2.3e-5053.78hypothetical protein Csa_6G344300 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006470.1CmoCh15G006470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 66..110
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 224..259
score: 5.656coord: 67..101
score: 10.665coord: 291..325
score: 5.371coord: 190..223
score: 5
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 66..144
score: 5.9E-70coord: 170..332
score: 5.9