CmaCh13G003520 (gene) Cucurbita maxima (Rimu)

NameCmaCh13G003520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem I subunit O
LocationCma_Chr13 : 4062830 .. 4063453 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGCGCTTCCCCAAATCTCCTCCCCAACAAAACCCCTCCCTCACTTCTACTGCATACCAATCCCAAACCCTAATCCGCACAATCCCTCCCAAAAATGGCGTCCGCCTTCGCTACCTCCTCCTCCGTCGTCGGCCTCGGAAGCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTCGTCTCCGGTAACCGGCTTCCACTTGCAACTATTTTCCCCTTCCTCTGCCTTGTAATTGAATTTGGCGTTTTTTCTCGTCTTCGCAGGGTTCATCAAGCCCCCTGTCGTCGCGAGGAATCCGTTCGGCGTGGCGCGTTCATTCGGCGGAAGGTTCACCTGGTAAGTAAGATTAGAGTGAGAGATAGTATATGAGTTGGTCGGTTTGGGATTCGATTTGGAGAATGACGAGTTTGTTGTACGGTTTCGTGGTTTGAAAGCTTTCAGAGAGATTGGCTGAGGAGAGATCTGAATGTGATCGGATTTGGACTCATCGGGTGGATTGCGCCGTCGAGTATCCCGGTGATCGACGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCGTCTCCACCGGCGCTCACTTCTCAGTTCTGGTAA

mRNA sequence

AACAGCGCTTCCCCAAATCTCCTCCCCAACAAAACCCCTCCCTCACTTCTACTGCATACCAATCCCAAACCCTAATCCGCACAATCCCTCCCAAAAATGGCGTCCGCCTTCGCTACCTCCTCCTCCGTCGTCGGCCTCGGAAGCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTCGTCTCCGGGTTCATCAAGCCCCCTGTCGTCGCGAGGAATCCGTTCGGCGTGGCGCGTTCATTCGGCGGAAGGTTCACCTGCTTTCAGAGAGATTGGCTGAGGAGAGATCTGAATGTGATCGGATTTGGACTCATCGGGTGGATTGCGCCGTCGAGTATCCCGGTGATCGACGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCGTCTCCACCGGCGCTCACTTCTCAGTTCTGGTAA

Coding sequence (CDS)

ATGGCGTCCGCCTTCGCTACCTCCTCCTCCGTCGTCGGCCTCGGAAGCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTCGTCTCCGGGTTCATCAAGCCCCCTGTCGTCGCGAGGAATCCGTTCGGCGTGGCGCGTTCATTCGGCGGAAGGTTCACCTGCTTTCAGAGAGATTGGCTGAGGAGAGATCTGAATGTGATCGGATTTGGACTCATCGGGTGGATTGCGCCGTCGAGTATCCCGGTGATCGACGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCGTCTCCACCGGCGCTCACTTCTCAGTTCTGGTAA

Protein sequence

MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW
BLAST of CmaCh13G003520 vs. Swiss-Prot
Match: PSAO_ARATH (Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-38
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60
           MA+ FAT S+V+GLG SS+++         S F+KP + A+NP  +A + GGR TCF+R+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG ELAHFP+PPALTSQFW
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

BLAST of CmaCh13G003520 vs. TrEMBL
Match: A0A0A0LT61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168350 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.6e-49
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60
           MA+AFA +SSV GLG++SLSSPSSRSPRLVSGFIKPPV ARNP  VA + GG+FTCF+RD
Sbjct: 1   MATAFA-TSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFW 115

BLAST of CmaCh13G003520 vs. TrEMBL
Match: A0A067JJG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26726 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.8e-42
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSSRSPR---LVSGFIKPPVVARNPFGVARSFGGRFTCF 60
           MA+AFATSS+V+GLGSSSLSSP S S R   L SGF+K    ARNP   A S GG+F CF
Sbjct: 1   MAAAFATSSTVIGLGSSSLSSPRSCSCRRTCLSSGFVKSVATARNPLRQAGSNGGKFMCF 60

Query: 61  QRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           +RDWLRRDLNVIGFGLIGW+APSSIP I+GKSLTGLFFESIGAELAHFP+PPALTSQFW
Sbjct: 61  ERDWLRRDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGAELAHFPTPPALTSQFW 119

BLAST of CmaCh13G003520 vs. TrEMBL
Match: B9MYU1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20960g PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-40
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSS-RSPR---LVSGFIKPPVVARNPFGVARSFGGRFTC 60
           MA+ FA+ S+VVGLGS SLSSPS   SP+   L SGF+K PV ARNP G+A + GG+F C
Sbjct: 1   MAATFASPSAVVGLGSGSLSSPSRISSPKKICLSSGFVKSPVTARNPLGLAGTGGGKFMC 60

Query: 61  FQRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           FQ DWLR+DLNVIGFGLIGW+APSS+P I GKSLTGLFFESIG ELAHFP+PP LTSQFW
Sbjct: 61  FQGDWLRKDLNVIGFGLIGWLAPSSVPAIGGKSLTGLFFESIGTELAHFPTPPPLTSQFW 120

BLAST of CmaCh13G003520 vs. TrEMBL
Match: U5GGE9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20960g PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-40
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSS-RSPR---LVSGFIKPPVVARNPFGVARSFGGRFTC 60
           MA+ FA+ S+VVGLGS SLSSPS   SP+   L SGF+K PV ARNP G+A + GG+F C
Sbjct: 1   MAATFASPSAVVGLGSGSLSSPSRISSPKKICLSSGFVKSPVTARNPLGLAGTGGGKFMC 60

Query: 61  FQRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           FQ DWLR+DLNVIGFGLIGW+APSS+P I GKSLTGLFFESIG ELAHFP+PP LTSQFW
Sbjct: 61  FQGDWLRKDLNVIGFGLIGWLAPSSVPAIGGKSLTGLFFESIGTELAHFPTPPPLTSQFW 120

BLAST of CmaCh13G003520 vs. TrEMBL
Match: B9HQ34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16240g PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-40
Identity = 86/120 (71.67%), Postives = 101/120 (84.17%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPS-SRSPR---LVSGFIKPPVVARNPFGVARSFGGRFTC 60
           MA+ FA+SS+V GLGSSSLSSPS + SP+   L SGF+K PV AR+P  +A + GG+F C
Sbjct: 1   MAATFASSSAVTGLGSSSLSSPSRASSPKKICLSSGFVKSPVAARSPLRLAGTHGGKFMC 60

Query: 61  FQRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           F+RDWLR+DLNVIGFGLIGW+APSSIP I GKSL+GLFFESIG ELAHFP+PP LTSQFW
Sbjct: 61  FERDWLRKDLNVIGFGLIGWLAPSSIPAIGGKSLSGLFFESIGTELAHFPTPPPLTSQFW 120

BLAST of CmaCh13G003520 vs. TAIR10
Match: AT1G08380.1 (AT1G08380.1 photosystem I subunit O)

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-39
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60
           MA+ FAT S+V+GLG SS+++         S F+KP + A+NP  +A + GGR TCF+R+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG ELAHFP+PPALTSQFW
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

BLAST of CmaCh13G003520 vs. NCBI nr
Match: gi|449443468|ref|XP_004139499.1| (PREDICTED: photosystem I subunit O [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 3.7e-49
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60
           MA+AFA +SSV GLG++SLSSPSSRSPRLVSGFIKPPV ARNP  VA + GG+FTCF+RD
Sbjct: 1   MATAFA-TSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGAELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFW 115

BLAST of CmaCh13G003520 vs. NCBI nr
Match: gi|659127336|ref|XP_008463649.1| (PREDICTED: uncharacterized protein LOC103501744 [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-47
Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60
           MA+AFA +SSV GLG++SLSSPSSRSPRLVSGFIK PV ARNP  V R+  GRFTCF+RD
Sbjct: 1   MATAFA-TSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           WLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFW
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 115

BLAST of CmaCh13G003520 vs. NCBI nr
Match: gi|802753230|ref|XP_012088445.1| (PREDICTED: photosystem I subunit O [Jatropha curcas])

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-42
Identity = 92/119 (77.31%), Postives = 101/119 (84.87%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSSRSPR---LVSGFIKPPVVARNPFGVARSFGGRFTCF 60
           MA+AFATSS+V+GLGSSSLSSP S S R   L SGF+K    ARNP   A S GG+F CF
Sbjct: 1   MAAAFATSSTVIGLGSSSLSSPRSCSCRRTCLSSGFVKSVATARNPLRQAGSNGGKFMCF 60

Query: 61  QRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           +RDWLRRDLNVIGFGLIGW+APSSIP I+GKSLTGLFFESIGAELAHFP+PPALTSQFW
Sbjct: 61  ERDWLRRDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGAELAHFPTPPALTSQFW 119

BLAST of CmaCh13G003520 vs. NCBI nr
Match: gi|743796878|ref|XP_011006585.1| (PREDICTED: photosystem I subunit O-like [Populus euphratica])

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40
Identity = 88/120 (73.33%), Postives = 99/120 (82.50%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSS-RSPRLV---SGFIKPPVVARNPFGVARSFGGRFTC 60
           MA+ FA+ S+VVGLGS SLSSPS   SP+ +   SGF+K PV ARNP G+A + GG+F C
Sbjct: 1   MAATFASPSAVVGLGSGSLSSPSRISSPKKICLGSGFVKSPVTARNPLGLAGTGGGKFMC 60

Query: 61  FQRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           FQ DWLR+DLNVIGFGLIGWIAPSSIP I GKSLTGLFFESIG ELAHFP+PP LTSQFW
Sbjct: 61  FQGDWLRKDLNVIGFGLIGWIAPSSIPAIGGKSLTGLFFESIGTELAHFPTPPPLTSQFW 120

BLAST of CmaCh13G003520 vs. NCBI nr
Match: gi|566167691|ref|XP_006384772.1| (hypothetical protein POPTR_0004s20960g [Populus trichocarpa])

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-40
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 1

Query: 1   MASAFATSSSVVGLGSSSLSSPSS-RSPR---LVSGFIKPPVVARNPFGVARSFGGRFTC 60
           MA+ FA+ S+VVGLGS SLSSPS   SP+   L SGF+K PV ARNP G+A + GG+F C
Sbjct: 1   MAATFASPSAVVGLGSGSLSSPSRISSPKKICLSSGFVKSPVTARNPLGLAGTGGGKFMC 60

Query: 61  FQRDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFW 117
           FQ DWLR+DLNVIGFGLIGW+APSS+P I GKSLTGLFFESIG ELAHFP+PP LTSQFW
Sbjct: 61  FQGDWLRKDLNVIGFGLIGWLAPSSVPAIGGKSLTGLFFESIGTELAHFPTPPPLTSQFW 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PSAO_ARATH2.3e-3865.52Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LT61_CUCSA2.6e-4987.07Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168350 PE=4 SV=1[more]
A0A067JJG3_JATCU1.8e-4277.31Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26726 PE=4 SV=1[more]
B9MYU1_POPTR1.7e-4072.50Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20960g PE=4 SV=1[more]
U5GGE9_POPTR1.7e-4072.50Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20960g PE=4 SV=1[more]
B9HQ34_POPTR3.8e-4071.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16240g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G08380.11.3e-3965.52 photosystem I subunit O[more]
Match NameE-valueIdentityDescription
gi|449443468|ref|XP_004139499.1|3.7e-4987.07PREDICTED: photosystem I subunit O [Cucumis sativus][more]
gi|659127336|ref|XP_008463649.1|1.2e-4785.34PREDICTED: uncharacterized protein LOC103501744 [Cucumis melo][more]
gi|802753230|ref|XP_012088445.1|2.6e-4277.31PREDICTED: photosystem I subunit O [Jatropha curcas][more]
gi|743796878|ref|XP_011006585.1|1.4e-4073.33PREDICTED: photosystem I subunit O-like [Populus euphratica][more]
gi|566167691|ref|XP_006384772.1|2.4e-4072.50hypothetical protein POPTR_0004s20960g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009657 plastid organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006364 rRNA processing
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0009522 photosystem I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G003520.1CmaCh13G003520.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36311FAMILY NOT NAMEDcoord: 3..116
score: 3.4
NoneNo IPR availablePANTHERPTHR36311:SF1PHOTOSYSTEM I SUBUNIT Ocoord: 3..116
score: 3.4