CmaCh12G011380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G011380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr12 : 8962865 .. 8964727 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGGCGGCAGCGGCGTTTGTTTTCATTTTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCGGACAGGATGCTACGAGGTTCGGTGCCTCCTTCCGATAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGTACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGTTCCTCTGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGCTTCCATGGTTAACGGAACCCAGAAGCAAGATCCTTCTTTGAGGCCTTGAATCTCATGGGGGAATGGAATTTGAAGCTTATGTATAGTTCTTCTTCATACAAAGTTCTTATTGTTCTTATTTTATTTTGTTAATTATTTGTTTTTTTGTTCCATAGTTTGAGGCTCATGATGTGATTGGATTAGCCAAATTTTGACCATTGTTTGTTCCTTGAATCCCAAGGAATTTAAAAAATAAAAAAAAAATGCTTTTTTTTTTTTTTTTTGTGAATTTTTATCTCGAGAGGATTGTTGTAACGAGTTTGATATACATAGTTTGTGTGACTTCAGTATTTCAATGCATCTCTTGCAACATGACCATATTACTTACTTATTGGTGGGTGTGTGGGGGGTGCGTGCCGGAGATGAGCGGGGGGAGCGCACACGGGAGGTGTGCGGGGGCGAGCACACACGAGAGTGGGATCTGGGGGTGTGTTTAACTATTTCTAAGTGTAAAATTATCTCCATATATAGGCACCCGAGTTATTTTTAGCATTGTCTCACTTGCATGTTTTTTAAAAAAATTTTGAAGTCATGGGACTAAATGATTAAGCTCCAAACAGAACAATATGCCTAAAAGGGAAAACCTAAAATAGAACAATATCCACTAGCGGTGAGATTAGGTTGTTACAAAGGATATCAAAGCCAGACACTAGGTGATGTGCCAGTGAGAAAGTTGAACCCCAAAGGGGGTGGACATAAGGCAGTGTTGGGCTTCAAAGGGAGTGGATTGTAAGATCCCACATTGATTTTGGAGGAGAAAGAGTATTTTTTATAAGGGTGTAGAAATCTTTCTATCATACGCGATTTAAAAACATTGAAAGAAAATCGGATGAGATTGAGTTTGTTACATAATTAGACTAATTCATTCATATAGATGACAACTTCATTTCTTTCTGATTTTAAATTGCTTCATAAAATTGTTCCTCGAGATAGTCTCGATTAGAATCACTCTCATTCAAATATGATATCAATTCGTTCGTTCATCCACTTCTCATACGCACAAAAGAAAGAGAAGAAAATTTACATAATACACTACAAACAAATACCTTAACTTGGAAAAAGAACACCAAAGATCAAATCCTCACACCATTGTTTACTCATAAGATAAAGCAAGTGCTTCTTCAGTAAGAAGGTTTCTTCTCTTCTTTTGTCATCCTAATTTCTATCGACTTTATTCTCATACTTTCAGTTACCATCATCAGCTGATTTCAAGTAGAGAGTCTCACCTCCATCTCCGCCATGGCTCCCGGAGCTCCCTCCACGTCCCTCGCCTGACCCGGTTCCTCCCATATCTTGCTTGCTCCCACCAGCTAGGCTGCGGTGCAAGCTATCAGCTGCAGCATTGTGGCTGAAATCTGGGAATCCTCCTCCTCCAAGTGCTCCTCCGTTGCCTCCGGCATTGGCGGCATCGTTTTGCAGCATGTTGAATCCTATGCCACCTCCGGAGCTCATCCCGAGTTGGCTGTGTAAAGCTTGCTGCTGTAGGCTAGAAAATGGCTGTTGGGTGTACAACATGGAGGACCGAGCAGCCATCAGTGATTGTGGTGTCATTTGCTGA

mRNA sequence

ATGAAGACGGCGGCAGCGGCGTTTGTTTTCATTTTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCGGACAGGATGCTACGAGGTTCGGTGCCTCCTTCCGATAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGTACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGTTCCTCTGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGCTTCCATGAGAGTCTCACCTCCATCTCCGCCATGGCTCCCGGAGCTCCCTCCACGTCCCTCGCCTGACCCGGTTCCTCCCATATCTTGCTTGCTCCCACCAGCTAGGCTGCGGTGCAAGCTATCAGCTGCAGCATTGTGGCTGAAATCTGGGAATCCTCCTCCTCCAAGTGCTCCTCCGTTGCCTCCGGCATTGGCGGCATCGTTTTGCAGCATGTTGAATCCTATGCCACCTCCGGAGCTCATCCCGAGTTGGCTGTGTAAAGCTTGCTGCTGTAGGCTAGAAAATGGCTGTTGGGTGTACAACATGGAGGACCGAGCAGCCATCAGTGATTGTGGTGTCATTTGCTGA

Coding sequence (CDS)

ATGAAGACGGCGGCAGCGGCGTTTGTTTTCATTTTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCGGACAGGATGCTACGAGGTTCGGTGCCTCCTTCCGATAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGTACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGTTCCTCTGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGCTTCCATGAGAGTCTCACCTCCATCTCCGCCATGGCTCCCGGAGCTCCCTCCACGTCCCTCGCCTGACCCGGTTCCTCCCATATCTTGCTTGCTCCCACCAGCTAGGCTGCGGTGCAAGCTATCAGCTGCAGCATTGTGGCTGAAATCTGGGAATCCTCCTCCTCCAAGTGCTCCTCCGTTGCCTCCGGCATTGGCGGCATCGTTTTGCAGCATGTTGAATCCTATGCCACCTCCGGAGCTCATCCCGAGTTGGCTGTGTAAAGCTTGCTGCTGTAGGCTAGAAAATGGCTGTTGGGTGTACAACATGGAGGACCGAGCAGCCATCAGTGATTGTGGTGTCATTTGCTGA

Protein sequence

MKTAAAAFVFIFLCIFHVSAARVLTGERWRPVSDRMLRGSVPPSDRNPCSFIPGLGRGRCTLSEVEDEAGGGGGSSAFPGMNFDGFAAASMRVSPPSPPWLPELPPRPSPDPVPPISCLLPPARLRCKLSAAALWLKSGNPPPPSAPPLPPALAASFCSMLNPMPPPELIPSWLCKACCCRLENGCWVYNMEDRAAISDCGVIC
Homology
[Close]
BLAST of CmaCh12G011380 vs. TrEMBL
Match: A0A0A0LJ84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.2e-22
Identity = 65/95 (68.42%), Postives = 70/95 (73.68%), Query Frame = 1 

Query: 1  MKTAAAAFVFIFLCIFHVSAARVLTGERWRP---VSDRMLRGSVPPSDRNPCSFIPGLGR 60
          MKT A  F+FIFL I  +SAARVL GERW P   V   MLRG VP S RNPCSFIPG  R
Sbjct: 6  MKTVA--FLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSR 65

Query: 61 GRCTLSEV-EDEAGGGGGSSAFPGMNFDGFAAASM 92
          GRCTLSEV E +A   GGSSAFPG+N DGFAAAS+
Sbjct: 66 GRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASV 98

[Close]
BLAST of CmaCh12G011380 vs. NCBI nr
Match: gi|700205663|gb|KGN60782.1| (hypothetical protein Csa_2G010180 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 65/95 (68.42%), Postives = 70/95 (73.68%), Query Frame = 1 

Query: 1  MKTAAAAFVFIFLCIFHVSAARVLTGERWRP---VSDRMLRGSVPPSDRNPCSFIPGLGR 60
          MKT A  F+FIFL I  +SAARVL GERW P   V   MLRG VP S RNPCSFIPG  R
Sbjct: 6  MKTVA--FLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSR 65

Query: 61 GRCTLSEV-EDEAGGGGGSSAFPGMNFDGFAAASM 92
          GRCTLSEV E +A   GGSSAFPG+N DGFAAAS+
Sbjct: 66 GRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASV 98

The following BLAST results are available for this feature:
BLAST of CmaCh12G011380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G011380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ84_CUCSA8.2e-2268.42Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1[more]
BLAST of CmaCh12G011380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G011380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205663|gb|KGN60782.1|1.2e-2168.42hypothetical protein Csa_2G010180 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G011380.1CmaCh12G011380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 8..66
score: 2.5
NoneNo IPR availablePANTHERPTHR33592:SF2SUBFAMILY NOT NAMEDcoord: 8..66
score: 2.5