Cp4.1LG07g09810 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g09810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 8781830 .. 8782171 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTTTCTGTTATGAAGACGCCGGCAGCGGCAGCGGCGGCGTTTGTTTTCATTCTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCCGACAGGATGCTACGAGGTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGCGGTTCCTCCGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGGTGCCATGGTTAACGGAACCCAGAAGCAAGATCCTTCATTGAGGCCTTGA

mRNA sequence

ATGCCTTTTTCTGTTATGAAGACGCCGGCAGCGGCAGCGGCGGCGTTTGTTTTCATTCTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCCGACAGGATGCTACGAGGTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGCGGTTCCTCCGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGGTGCCATGGTTAACGGAACCCAGAAGCAAGATCCTTCATTGAGGCCTTGA

Coding sequence (CDS)

ATGCCTTTTTCTGTTATGAAGACGCCGGCAGCGGCAGCGGCGGCGTTTGTTTTCATTCTTCTCTGTATTTTCCACGTATCGGCGGCCAGGGTCTTGACCGGAGAGCGGTGGCGACCAGTGTCCGACAGGATGCTACGAGGTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGGCTTGGCCGTGGACGCTGCACGTTGAGCGAGGTGGAAGACGAAGCCGGCGGCGGCGGCGGCGGTTCCTCCGCCTTTCCCGGCATGAACTTTGATGGGTTTGCGGCGGGTGCCATGGTTAACGGAACCCAGAAGCAAGATCCTTCATTGAGGCCTTGA

Protein sequence

MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGPVPPSGRNPCSFIPGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSLRP
Homology
[Close]
BLAST of Cp4.1LG07g09810 vs. TrEMBL
Match: A0A0A0LJ84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.0e-27
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 1 

Query: 1   MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGPVPPSGRNPC 60
           M FS+MKT      AF+FI L I  +SAARVL GERW P   V   MLRGPVP S RNPC
Sbjct: 1   MAFSLMKT-----VAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPC 60

Query: 61  SFIPGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSL 112
           SFIPG  RGRCTLSEV++      GGSSAFPG+N DGFAA ++VN TQKQD S+
Sbjct: 61  SFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

[Close]
BLAST of Cp4.1LG07g09810 vs. TrEMBL
Match: B9I5L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 1 

Query: 16  FVFILL--CIFHVSAARVLTGERWRPVS----DRMLRGPVPPSGRNPCSFIPGLGRGRCT 75
           FV I+L  C   V AAR L GERW          + RGPVPPSG +PC+ IPG G G+C+
Sbjct: 15  FVTIVLGSCSQQVLAARPLEGERWSEKIVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCS 74

Query: 76  LSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPS 111
           L E+            AFP    +  AA +  +GT KQD S
Sbjct: 75  LGEMNFAGHTVALAPPAFPDAIMNFGAAASTTSGTHKQDSS 115

[Close]
BLAST of Cp4.1LG07g09810 vs. TrEMBL
Match: A0A067DKC1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044436mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.7e-06
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 1  MPFSVMKTPAAAAAAFVFILLCI---FHVSAARVLTGERW---RPVSDRMLR-GPVPPSG 60
          M F+  K  +     F  ILLC+      SA R L  E+W    P+  + LR GPVP  G
Sbjct: 1  MGFNQSKKFSKIVLIFCTILLCLSFCLQASAMRPLFEEQWLQKNPIKIQSLRKGPVPSRG 60

Query: 61 RNPCSFIPGLGRGRCTLSEVE 75
           NPC++IPG GRGRCTL++ +
Sbjct: 61 GNPCTYIPGRGRGRCTLTQTK 81

[Close]
BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match: gi|700205663|gb|KGN60782.1| (hypothetical protein Csa_2G010180 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 1 

Query: 1   MPFSVMKTPAAAAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGPVPPSGRNPC 60
           M FS+MKT      AF+FI L I  +SAARVL GERW P   V   MLRGPVP S RNPC
Sbjct: 1   MAFSLMKT-----VAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPC 60

Query: 61  SFIPGLGRGRCTLSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPSL 112
           SFIPG  RGRCTLSEV++      GGSSAFPG+N DGFAA ++VN TQKQD S+
Sbjct: 61  SFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

[Close]
BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match: gi|224123488|ref|XP_002319090.1| (hypothetical protein POPTR_0013s04080g [Populus trichocarpa])

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-07
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 1 

Query: 16  FVFILL--CIFHVSAARVLTGERWRPVS----DRMLRGPVPPSGRNPCSFIPGLGRGRCT 75
           FV I+L  C   V AAR L GERW          + RGPVPPSG +PC+ IPG G G+C+
Sbjct: 15  FVTIVLGSCSQQVLAARPLEGERWSEKIVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCS 74

Query: 76  LSEVEDEAGGGGGGSSAFPGMNFDGFAAGAMVNGTQKQDPS 111
           L E+            AFP    +  AA +  +GT KQD S
Sbjct: 75  LGEMNFAGHTVALAPPAFPDAIMNFGAAASTTSGTHKQDSS 115

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g09810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g09810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ84_CUCSA8.0e-2763.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1[more]
B9I5L3_POPTR2.4e-0742.57Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1[more]
A0A067DKC1_CITSI7.7e-0643.21Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044436mg PE=4 SV=1[more]
BLAST of Cp4.1LG07g09810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g09810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205663|gb|KGN60782.1|1.1e-2663.16hypothetical protein Csa_2G010180 [Cucumis sativus][more]
gi|224123488|ref|XP_002319090.1|3.5e-0742.57hypothetical protein POPTR_0013s04080g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g09810.1Cp4.1LG07g09810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 4..111
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g09810CmaCh12G011380Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g09810CmaCh05G012220Cucurbita maxima (Rimu)cmacpeB789
Cp4.1LG07g09810Cla013634Watermelon (97103) v1cpewmB806
Cp4.1LG07g09810Csa2G010180Cucumber (Chinese Long) v2cpecuB820
Cp4.1LG07g09810MELO3C004406Melon (DHL92) v3.5.1cpemeB771
Cp4.1LG07g09810ClCG02G016880Watermelon (Charleston Gray)cpewcgB733
Cp4.1LG07g09810CSPI02G02720Wild cucumber (PI 183967)cpecpiB821
Cp4.1LG07g09810Lsi11G004200Bottle gourd (USVL1VR-Ls)cpelsiB659
Cp4.1LG07g09810MELO3C004406.2Melon (DHL92) v3.6.1cpemedB907
Cp4.1LG07g09810CsaV3_2G003890Cucumber (Chinese Long) v3cpecucB1014
Cp4.1LG07g09810CsGy2G002820Cucumber (Gy14) v2cgybcpeB271
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g09810Cp4.1LG11g10010Cucurbita pepo (Zucchini)cpecpeB139
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g09810Melon (DHL92) v3.6.1cpemedB908
Cp4.1LG07g09810Silver-seed gourdcarcpeB0055
Cp4.1LG07g09810Silver-seed gourdcarcpeB0190
Cp4.1LG07g09810Silver-seed gourdcarcpeB0361
Cp4.1LG07g09810Silver-seed gourdcarcpeB0817
Cp4.1LG07g09810Silver-seed gourdcarcpeB1496
Cp4.1LG07g09810Cucumber (Chinese Long) v3cpecucB1015
Cp4.1LG07g09810Wax gourdcpewgoB1006
Cp4.1LG07g09810Wax gourdcpewgoB1023
Cp4.1LG07g09810Wax gourdcpewgoB1068
Cp4.1LG07g09810Cucurbita pepo (Zucchini)cpecpeB140
Cp4.1LG07g09810Cucurbita pepo (Zucchini)cpecpeB373
Cp4.1LG07g09810Cucurbita pepo (Zucchini)cpecpeB504
Cp4.1LG07g09810Cucumber (Gy14) v1cgycpeB0356
Cp4.1LG07g09810Cucurbita maxima (Rimu)cmacpeB164
Cp4.1LG07g09810Cucurbita moschata (Rifu)cmocpeB175
Cp4.1LG07g09810Cucurbita moschata (Rifu)cmocpeB742
Cp4.1LG07g09810Cucurbita moschata (Rifu)cmocpeB745
Cp4.1LG07g09810Wild cucumber (PI 183967)cpecpiB822
Cp4.1LG07g09810Bottle gourd (USVL1VR-Ls)cpelsiB660
Cp4.1LG07g09810Watermelon (Charleston Gray)cpewcgB724
Cp4.1LG07g09810Melon (DHL92) v3.5.1cpemeB772