ClCG02G016880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G016880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 31357918 .. 31358253 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTCTTATGAAGATGGCTGCCTTTCTTTTCATTTTTCTTTGTATTTTCGACGCGTCAGCCTCAAGGGTCTTGACCGGAGAGCGGTGGCTTCCGGGGCCGAGTGTTTCCATCGCGGTGCTGCGAGGTCCCGTGCCTAGTTCCAGTAGGAATCCATGTTCCTTTATTCCGGGGTTCAGCCGAGGCCGGTGTACGTTGAGCGAGGTGGAAGATGGTGATGCCGGTGTCCAAGGTGGCTCCTCCGCCTTCCCTGGCCTGAATGCTGATGGGTTTGCCGCGGCTTCTATGGTTAACCAAACCCAGAAGCAAAATTCTTCTTTGAGCTCTTGA

mRNA sequence

ATGGCTTCTTCTCTTATGAAGATGGCTGCCTTTCTTTTCATTTTTCTTTGTATTTTCGACGCGTCAGCCTCAAGGGTCTTGACCGGAGAGCGGTGGCTTCCGGGGCCGAGTGTTTCCATCGCGGTGCTGCGAGGTCCCGTGCCTAGTTCCAGTAGGAATCCATGTTCCTTTATTCCGGGGTTCAGCCGAGGCCGGTGTACGTTGAGCGAGGTGGAAGATGGTGATGCCGGTGTCCAAGGTGGCTCCTCCGCCTTCCCTGGCCTGAATGCTGATGGGTTTGCCGCGGCTTCTATGGTTAACCAAACCCAGAAGCAAAATTCTTCTTTGAGCTCTTGA

Coding sequence (CDS)

ATGGCTTCTTCTCTTATGAAGATGGCTGCCTTTCTTTTCATTTTTCTTTGTATTTTCGACGCGTCAGCCTCAAGGGTCTTGACCGGAGAGCGGTGGCTTCCGGGGCCGAGTGTTTCCATCGCGGTGCTGCGAGGTCCCGTGCCTAGTTCCAGTAGGAATCCATGTTCCTTTATTCCGGGGTTCAGCCGAGGCCGGTGTACGTTGAGCGAGGTGGAAGATGGTGATGCCGGTGTCCAAGGTGGCTCCTCCGCCTTCCCTGGCCTGAATGCTGATGGGTTTGCCGCGGCTTCTATGGTTAACCAAACCCAGAAGCAAAATTCTTCTTTGAGCTCTTGA

Protein sequence

MASSLMKMAAFLFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVEDGDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLSS

Homology

[Close]

BLAST of ClCG02G016880 vs. TrEMBL
Match: A0A0A0LJ84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-43
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 1


Query: 1   MASSLMKMAAFLFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPG 60
           MA SLMK  AFLFIFL I D SA+RVL GERWLPG  V  A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLSS 112
           FSRGRCTLSEV++GDA V+GGSSAFPGLNADGFAAAS+VNQTQKQ+SS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of ClCG02G016880 vs. TrEMBL
Match: I1JRQ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G248900 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1


Query: 1  MASSLMKMAAF--LFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFI 60
          M    MK+     + + L +     +R L GE+WL    V  ++ RGPV SS RNPCS +
Sbjct: 1  MGCCYMKLCVLTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTV 60

Query: 61 PGFSRGRCTLSEV 72
          PG SRGRCTL E+
Sbjct: 61 PGRSRGRCTLGEI 73

[Close]

BLAST of ClCG02G016880 vs. TrEMBL
Match: A0A0B2RDN7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_035587 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1


Query: 1  MASSLMKMAAF--LFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFI 60
          M    MK+     + + L +     +R L GE+WL    V  ++ RGPV SS RNPCS +
Sbjct: 1  MGCCYMKLCVLTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTV 60

Query: 61 PGFSRGRCTLSEV 72
          PG SRGRCTL E+
Sbjct: 61 PGRSRGRCTLGEI 73

[Close]

BLAST of ClCG02G016880 vs. TrEMBL
Match: B9I5L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 38/93 (40.86%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 17  CIFDASASRVLTGERWLPGPSVSIAVL-RGPVPSSSRNPCSFIPGFSRGRCTLSEVEDGD 76
           C     A+R L GERW      +I  L RGPVP S  +PC+ IPG   G+C+L E+    
Sbjct: 23  CSQQVLAARPLEGERWSEKIVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAG 82

Query: 77  AGVQGGSSAFPGLNADGFAAASMVNQTQKQNSS 109
             V     AFP    +  AAAS  + T KQ+SS
Sbjct: 83  HTVALAPPAFPDAIMNFGAAASTTSGTHKQDSS 115

[Close]

BLAST of ClCG02G016880 vs. TrEMBL
Match: V7BMI3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G103600g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 6  MKMAAFL---FIFLCIFDASASRVLTGERWLPGPSVSIAVL-RGPVPSSSRNPCSFIPGF 65
          MKM+  L    + L +   S +R L GE+WL    V +  L RGPV SS RNPCS +PG 
Sbjct: 7  MKMSLLLTTMILVLSLQKTSGARTLEGEQWLHKNVVLLHSLQRGPVNSSQRNPCSTVPGR 66

Query: 66 SRGRCTLSEV 72
          ++GRCTL E+
Sbjct: 67 NKGRCTLGEI 76

[Close]

BLAST of ClCG02G016880 vs. NCBI nr
Match: gi|700205663|gb|KGN60782.1| (hypothetical protein Csa_2G010180 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 1


Query: 1   MASSLMKMAAFLFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPG 60
           MA SLMK  AFLFIFL I D SA+RVL GERWLPG  V  A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLSS 112
           FSRGRCTLSEV++GDA V+GGSSAFPGLNADGFAAAS+VNQTQKQ+SS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

[Close]

BLAST of ClCG02G016880 vs. NCBI nr
Match: gi|734400476|gb|KHN31480.1| (hypothetical protein glysoja_035587 [Glycine soja])

HSP 1 Score: 62.0 bits (149), Expect = 7.6e-07
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1


Query: 1  MASSLMKMAAF--LFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFI 60
          M    MK+     + + L +     +R L GE+WL    V  ++ RGPV SS RNPCS +
Sbjct: 1  MGCCYMKLCVLTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTV 60

Query: 61 PGFSRGRCTLSEV 72
          PG SRGRCTL E+
Sbjct: 61 PGRSRGRCTLGEI 73

[Close]

BLAST of ClCG02G016880 vs. NCBI nr
Match: gi|224123488|ref|XP_002319090.1| (hypothetical protein POPTR_0013s04080g [Populus trichocarpa])

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 38/93 (40.86%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 17  CIFDASASRVLTGERWLPGPSVSIAVL-RGPVPSSSRNPCSFIPGFSRGRCTLSEVEDGD 76
           C     A+R L GERW      +I  L RGPVP S  +PC+ IPG   G+C+L E+    
Sbjct: 23  CSQQVLAARPLEGERWSEKIVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAG 82

Query: 77  AGVQGGSSAFPGLNADGFAAASMVNQTQKQNSS 109
             V     AFP    +  AAAS  + T KQ+SS
Sbjct: 83  HTVALAPPAFPDAIMNFGAAASTTSGTHKQDSS 115

[Close]

BLAST of ClCG02G016880 vs. NCBI nr
Match: gi|593693348|ref|XP_007147195.1| (hypothetical protein PHAVU_006G103600g [Phaseolus vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-06
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 6  MKMAAFL---FIFLCIFDASASRVLTGERWLPGPSVSIAVL-RGPVPSSSRNPCSFIPGF 65
          MKM+  L    + L +   S +R L GE+WL    V +  L RGPV SS RNPCS +PG 
Sbjct: 7  MKMSLLLTTMILVLSLQKTSGARTLEGEQWLHKNVVLLHSLQRGPVNSSQRNPCSTVPGR 66

Query: 66 SRGRCTLSEV 72
          ++GRCTL E+
Sbjct: 67 NKGRCTLGEI 76

[Close]

BLAST of ClCG02G016880 vs. NCBI nr
Match: gi|641818922|gb|KDO39467.1| (hypothetical protein CISIN_1g044436mg [Citrus sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-06
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 11 FLFIFLCI---FDASASRVLTGERWLPGPSVSIAVLR-GPVPSSSRNPCSFIPGFSRGRC 70
          F  I LC+     ASA R L  E+WL    + I  LR GPVPS   NPC++IPG  RGRC
Sbjct: 16 FCTILLCLSFCLQASAMRPLFEEQWLQKNPIKIQSLRKGPVPSRGGNPCTYIPGRGRGRC 75

Query: 71 TLSEVE 73
          TL++ +
Sbjct: 76 TLTQTK 81

The following BLAST results are available for this feature:

BLAST of ClCG02G016880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ84_CUCSA	1.6e-43	81.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1	[more]
I1JRQ4_SOYBN	5.3e-07	43.84	Uncharacterized protein OS=Glycine max GN=GLYMA_03G248900 PE=4 SV=1	[more]
A0A0B2RDN7_GLYSO	5.3e-07	43.84	Uncharacterized protein OS=Glycine soja GN=glysoja_035587 PE=4 SV=1	[more]
B9I5L3_POPTR	3.4e-06	40.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1	[more]
V7BMI3_PHAVU	4.5e-06	47.14	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G103600g PE=4 SV=1	[more]

BLAST of ClCG02G016880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205663\|gb\|KGN60782.1\|	2.3e-43	81.98	hypothetical protein Csa_2G010180 [Cucumis sativus]	[more]
gi\|734400476\|gb\|KHN31480.1\|	7.6e-07	43.84	hypothetical protein glysoja_035587 [Glycine soja]	[more]
gi\|224123488\|ref\|XP_002319090.1\|	4.9e-06	40.86	hypothetical protein POPTR_0013s04080g [Populus trichocarpa]	[more]
gi\|593693348\|ref\|XP_007147195.1\|	6.4e-06	47.14	hypothetical protein PHAVU_006G103600g [Phaseolus vulgaris]	[more]
gi\|641818922\|gb\|KDO39467.1\|	6.4e-06	48.48	hypothetical protein CISIN_1g044436mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G016880.1	ClCG02G016880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 6..109 score: 9.7
None	No IPR available	PANTHER	PTHR33592:SF2	SUBFAMILY NOT NAMED	coord: 6..109 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G016880	Csa2G010180	Cucumber (Chinese Long) v2	cuwcgB122
ClCG02G016880	MELO3C004406	Melon (DHL92) v3.5.1	mewcgB375
ClCG02G016880	Cla013634	Watermelon (97103) v1	wcgwmB197
ClCG02G016880	Cla97C02G042610	Watermelon (97103) v2	wcgwmbB138
ClCG02G016880	CSPI02G02720	Wild cucumber (PI 183967)	cpiwcgB128
ClCG02G016880	CmaCh12G011380	Cucurbita maxima (Rimu)	cmawcgB156
ClCG02G016880	CmaCh05G012220	Cucurbita maxima (Rimu)	cmawcgB695
ClCG02G016880	Lsi11G004200	Bottle gourd (USVL1VR-Ls)	lsiwcgB098
ClCG02G016880	Cp4.1LG11g10010	Cucurbita pepo (Zucchini)	cpewcgB104
ClCG02G016880	Cp4.1LG07g09810	Cucurbita pepo (Zucchini)	cpewcgB733
ClCG02G016880	CsGy2G002820	Cucumber (Gy14) v2	cgybwcgB119
ClCG02G016880	MELO3C004406.2	Melon (DHL92) v3.6.1	medwcgB369
ClCG02G016880	CsaV3_2G003890	Cucumber (Chinese Long) v3	cucwcgB137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G016880	Cucurbita moschata (Rifu)	cmowcgB700
ClCG02G016880	Wild cucumber (PI 183967)	cpiwcgB139
ClCG02G016880	Wild cucumber (PI 183967)	cpiwcgB219
ClCG02G016880	Melon (DHL92) v3.5.1	mewcgB425
ClCG02G016880	Watermelon (97103) v1	wcgwmB191
ClCG02G016880	Watermelon (97103) v1	wcgwmB219
ClCG02G016880	Bottle gourd (USVL1VR-Ls)	lsiwcgB011
ClCG02G016880	Bottle gourd (USVL1VR-Ls)	lsiwcgB331
ClCG02G016880	Melon (DHL92) v3.6.1	medwcgB414
ClCG02G016880	Silver-seed gourd	carwcgB0245
ClCG02G016880	Silver-seed gourd	carwcgB1042
ClCG02G016880	Cucumber (Chinese Long) v3	cucwcgB220
ClCG02G016880	Watermelon (97103) v2	wcgwmbB160
ClCG02G016880	Wax gourd	wcgwgoB260
ClCG02G016880	Wax gourd	wcgwgoB318
ClCG02G016880	Cucumber (Gy14) v1	cgywcgB218
ClCG02G016880	Cucurbita moschata (Rifu)	cmowcgB144