Cp4.1LG11g10010 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g10010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG11 : 8475866 .. 8476201 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTTCTTTTATGAACACGGCGGCGTTTCTTTTCATTTTTCTCTGTGTTTTCCACATGTCGGCGGCGAGGGTCATGACCGGAGAGCGGTGGCTTCCGGCACCGAGGGTGCCCATGGCGATGCTGCGAGGTGCCGTGCCTAGTTCCAGTAGGAATCCATGTTCGTTTATTCCGGGGTTCAGCCGTGGCCGATGTACGTTGAGCGAGGCGGACGACGGTGCCGCCGCTGTCCACGGTGGCTCCTCCGCCTTATCTCGGCTGAATGCTGATGGGTTTGCAGCGGCTTCCATGGCTAACAAAACCCAGAAGAAAGATCCTTCCTTGAGGCCTTGA

mRNA sequence

ATGGGTTTTTCTTTTATGAACACGGCGGCGTTTCTTTTCATTTTTCTCTGTGTTTTCCACATGTCGGCGGCGAGGGTCATGACCGGAGAGCGGTGGCTTCCGGCACCGAGGGTGCCCATGGCGATGCTGCGAGGTGCCGTGCCTAGTTCCAGTAGGAATCCATGTTCGTTTATTCCGGGGTTCAGCCGTGGCCGATGTACGTTGAGCGAGGCGGACGACGGTGCCGCCGCTGTCCACGGTGGCTCCTCCGCCTTATCTCGGCTGAATGCTGATGGGTTTGCAGCGGCTTCCATGGCTAACAAAACCCAGAAGAAAGATCCTTCCTTGAGGCCTTGA

Coding sequence (CDS)

ATGGGTTTTTCTTTTATGAACACGGCGGCGTTTCTTTTCATTTTTCTCTGTGTTTTCCACATGTCGGCGGCGAGGGTCATGACCGGAGAGCGGTGGCTTCCGGCACCGAGGGTGCCCATGGCGATGCTGCGAGGTGCCGTGCCTAGTTCCAGTAGGAATCCATGTTCGTTTATTCCGGGGTTCAGCCGTGGCCGATGTACGTTGAGCGAGGCGGACGACGGTGCCGCCGCTGTCCACGGTGGCTCCTCCGCCTTATCTCGGCTGAATGCTGATGGGTTTGCAGCGGCTTCCATGGCTAACAAAACCCAGAAGAAAGATCCTTCCTTGAGGCCTTGA

Protein sequence

MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSLRP

Homology

[Close]

BLAST of Cp4.1LG11g10010 vs. TrEMBL
Match: A0A0A0LJ84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-35
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 1   MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPG 60
           M FS M T AFLFIFL +  MSAARV+ GERWLP   VP AMLRG VPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSL 110
           FSRGRCTLSE D+G A+V GGSSA   LNADGFAAAS+ N+TQK+D S+
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

[Close]

BLAST of Cp4.1LG11g10010 vs. NCBI nr
Match: gi|700205663|gb|KGN60782.1| (hypothetical protein Csa_2G010180 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 1   MGFSFMNTAAFLFIFLCVFHMSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPG 60
           M FS M T AFLFIFL +  MSAARV+ GERWLP   VP AMLRG VPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEADDGAAAVHGGSSALSRLNADGFAAASMANKTQKKDPSL 110
           FSRGRCTLSE D+G A+V GGSSA   LNADGFAAAS+ N+TQK+D S+
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g10010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g10010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ84_CUCSA	7.8e-35	73.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010180 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g10010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g10010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205663\|gb\|KGN60782.1\|	1.1e-34	73.39	hypothetical protein Csa_2G010180 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g10010.1	Cp4.1LG11g10010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 11..109 score: 1.1
None	No IPR available	PANTHER	PTHR33592:SF2	SUBFAMILY NOT NAMED	coord: 11..109 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g10010	CmaCh12G011380	Cucurbita maxima (Rimu)	cmacpeB171
Cp4.1LG11g10010	CmaCh05G012220	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g10010	Cla013634	Watermelon (97103) v1	cpewmB113
Cp4.1LG11g10010	Csa2G010180	Cucumber (Chinese Long) v2	cpecuB103
Cp4.1LG11g10010	MELO3C004406	Melon (DHL92) v3.5.1	cpemeB099
Cp4.1LG11g10010	ClCG02G016880	Watermelon (Charleston Gray)	cpewcgB104
Cp4.1LG11g10010	CSPI02G02720	Wild cucumber (PI 183967)	cpecpiB100
Cp4.1LG11g10010	Lsi11G004200	Bottle gourd (USVL1VR-Ls)	cpelsiB074
Cp4.1LG11g10010	MELO3C004406.2	Melon (DHL92) v3.6.1	cpemedB123
Cp4.1LG11g10010	CsaV3_2G003890	Cucumber (Chinese Long) v3	cpecucB0114
Cp4.1LG11g10010	CsGy2G002820	Cucumber (Gy14) v2	cgybcpeB168

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG11g10010	Cp4.1LG07g09810	Cucurbita pepo (Zucchini)	cpecpeB139

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g10010	Silver-seed gourd	carcpeB0357
Cp4.1LG11g10010	Silver-seed gourd	carcpeB1494
Cp4.1LG11g10010	Wax gourd	cpewgoB0114
Cp4.1LG11g10010	Wax gourd	cpewgoB0154
Cp4.1LG11g10010	Cucumber (Gy14) v1	cgycpeB0351
Cp4.1LG11g10010	Cucurbita moschata (Rifu)	cmocpeB147
Cp4.1LG11g10010	Cucurbita moschata (Rifu)	cmocpeB721