Cla97C02G042610 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G042610
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr02 : 30802397 .. 30802732 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTCTTATGAAGATGGCTGCCTTTCTTTTCATTTTTCTTTGTATTTTCGACGCGTCAGCCTCAAGGGTCTTGACCGGAGAGCGGTGGCTTCCGGGGCCGAGTGTTTCCATCGCGGTGCTGCGAGGTCCCGTGCCTAGTTCCAGTAGGAATCCATGTTCCTTTATTCCGGGGTTCAGCCGAGGCCGGTGTACGTTGAGCGAGGTGGAAGATGGTGATGCCGGTGTCCAAGGTGGCTCCTCCGCCTTCCCTGGCCTGAATGCTGATGGGTTTGCCGCGGCTTCTATGGTTAACCAAACCCAGAAGCAAAATTCTTCTTTGAGCTCTTGA

mRNA sequence

ATGGCTTCTTCTCTTATGAAGATGGCTGCCTTTCTTTTCATTTTTCTTTGTATTTTCGACGCGTCAGCCTCAAGGGTCTTGACCGGAGAGCGGTGGCTTCCGGGGCCGAGTGTTTCCATCGCGGTGCTGCGAGGTCCCGTGCCTAGTTCCAGTAGGAATCCATGTTCCTTTATTCCGGGGTTCAGCCGAGGCCGGTGTACGTTGAGCGAGGTGGAAGATGGTGATGCCGGTGTCCAAGGTGGCTCCTCCGCCTTCCCTGGCCTGAATGCTGATGGGTTTGCCGCGGCTTCTATGGTTAACCAAACCCAGAAGCAAAATTCTTCTTTGAGCTCTTGA

Coding sequence (CDS)

ATGGCTTCTTCTCTTATGAAGATGGCTGCCTTTCTTTTCATTTTTCTTTGTATTTTCGACGCGTCAGCCTCAAGGGTCTTGACCGGAGAGCGGTGGCTTCCGGGGCCGAGTGTTTCCATCGCGGTGCTGCGAGGTCCCGTGCCTAGTTCCAGTAGGAATCCATGTTCCTTTATTCCGGGGTTCAGCCGAGGCCGGTGTACGTTGAGCGAGGTGGAAGATGGTGATGCCGGTGTCCAAGGTGGCTCCTCCGCCTTCCCTGGCCTGAATGCTGATGGGTTTGCCGCGGCTTCTATGGTTAACCAAACCCAGAAGCAAAATTCTTCTTTGAGCTCTTGA

Protein sequence

MASSLMKMAAFLFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVEDGDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLSS

Homology

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BLAST of Cla97C02G042610 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_2G010180 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 7.0e-41
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MASSLMKMAAFLFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPG 60
           MA SLMK  AFLFIFL I D SA+RVL GERWLPG  V  A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLSS 112
           FSRGRCTLSEV++GDA V+GGSSAFPGLNADGFAAAS+VNQTQKQ+SS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

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BLAST of Cla97C02G042610 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 3   SSLMKMAAFLFIFLCIFD--ASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPG 62
           +++ K A  + +  C  +   +A R+L  E+WL    +  ++ RGPVP S  NPC+FIPG
Sbjct: 11  TTMAKWAIAVLLVSCFLEQKTAAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFIPG 70

Query: 63  FSRGRCTLSEVEDGDAGVQGGSSAFPGLNADGFAAA---SMVNQTQKQNSS 109
            +RGRCTLSE++      +  ++AFP +  D  A     S  N+TQKQ+SS
Sbjct: 71  RNRGRCTLSEMDVAGQFPRAPAAAFPDIVVDFGAVTAGNSGANETQKQDSS 121

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BLAST of Cla97C02G042610 vs. NCBI nr
Match: KHN31480.1 (hypothetical protein glysoja_035587 [Glycine soja] >KRH68765.1 hypothetical protein GLYMA_03G248900 [Glycine max])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1  MASSLMKMAAF--LFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFI 60
          M    MK+     + + L +     +R L GE+WL    V  ++ RGPV SS RNPCS +
Sbjct: 1  MGCCYMKLCVLTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTV 60

Query: 61 PGFSRGRCTLSEV 72
          PG SRGRCTL E+
Sbjct: 61 PGRSRGRCTLGEI 73

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BLAST of Cla97C02G042610 vs. NCBI nr
Match: GAV66766.1 (hypothetical protein CFOL_v3_10276 [Cephalotus follicularis])

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 39/97 (40.21%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 14  IFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVED 73
           I LC     A R L GE+WL    V  ++ RGPV  S  NPC++IPG   GRCT      
Sbjct: 18  IVLCFQQILAMRPLEGEQWLEKRIVVQSLQRGPVTPSGPNPCTYIPGRGTGRCTFEMDAA 77

Query: 74  GDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLS 111
                   S AFP       AA+S+ N+TQK ++S S
Sbjct: 78  THDTHDHESPAFPHPFVKFAAASSVANETQKPDNSSS 114

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BLAST of Cla97C02G042610 vs. NCBI nr
Match: KDO39467.1 (hypothetical protein CISIN_1g044436mg [Citrus sinensis])

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 11 FLFIFLCI---FDASASRVLTGERWLPGPSVSIAVLR-GPVPSSSRNPCSFIPGFSRGRC 70
          F  I LC+     ASA R L  E+WL    + I  LR GPVPS   NPC++IPG  RGRC
Sbjct: 16 FCTILLCLSFCLQASAMRPLFEEQWLQKNPIKIQSLRKGPVPSRGGNPCTYIPGRGRGRC 75

Query: 71 TLSEVE 73
          TL++ +
Sbjct: 76 TLTQTK 81

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BLAST of Cla97C02G042610 vs. TrEMBL
Match: tr|A0A0A0LJ84|A0A0A0LJ84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.6e-41
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MASSLMKMAAFLFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPG 60
           MA SLMK  AFLFIFL I D SA+RVL GERWLPG  V  A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLSS 112
           FSRGRCTLSEV++GDA V+GGSSAFPGLNADGFAAAS+VNQTQKQ+SS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

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BLAST of Cla97C02G042610 vs. TrEMBL
Match: tr|A0A2N9F903|A0A2N9F903_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 8   MAAFLFIFLCIF-DASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPGFSRGRC 67
           M  F+ +F+  F +A A R L GE WL        + RGPV  S  NPC++IPG S GRC
Sbjct: 1   MLIFIMLFVLGFHEALAMRPLDGEPWLNKNLAMQTLQRGPVTPSGPNPCTYIPGRSHGRC 60

Query: 68  TLSEVEDGDAGVQGGSSAFPGLNADGFAAASMVN 101
           TLSE++  D  V     AFP  +   FAAAS+ N
Sbjct: 61  TLSEMDVAD-HVAHAPPAFPD-HVVSFAAASIAN 92

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BLAST of Cla97C02G042610 vs. TrEMBL
Match: tr|I1JRQ4|I1JRQ4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1  MASSLMKMAAF--LFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFI 60
          M    MK+     + + L +     +R L GE+WL    V  ++ RGPV SS RNPCS +
Sbjct: 1  MGCCYMKLCVLTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTV 60

Query: 61 PGFSRGRCTLSEV 72
          PG SRGRCTL E+
Sbjct: 61 PGRSRGRCTLGEI 73

[Close]

BLAST of Cla97C02G042610 vs. TrEMBL
Match: tr|A0A0B2RDN7|A0A0B2RDN7_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_035587 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1  MASSLMKMAAF--LFIFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFI 60
          M    MK+     + + L +     +R L GE+WL    V  ++ RGPV SS RNPCS +
Sbjct: 1  MGCCYMKLCVLTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTV 60

Query: 61 PGFSRGRCTLSEV 72
          PG SRGRCTL E+
Sbjct: 61 PGRSRGRCTLGEI 73

[Close]

BLAST of Cla97C02G042610 vs. TrEMBL
Match: tr|A0A1Q3BFG1|A0A1Q3BFG1_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 39/97 (40.21%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 14  IFLCIFDASASRVLTGERWLPGPSVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVED 73
           I LC     A R L GE+WL    V  ++ RGPV  S  NPC++IPG   GRCT      
Sbjct: 18  IVLCFQQILAMRPLEGEQWLEKRIVVQSLQRGPVTPSGPNPCTYIPGRGTGRCTFEMDAA 77

Query: 74  GDAGVQGGSSAFPGLNADGFAAASMVNQTQKQNSSLS 111
                   S AFP       AA+S+ N+TQK ++S S
Sbjct: 78  THDTHDHESPAFPHPFVKFAAASSVANETQKPDNSSS 114

The following BLAST results are available for this feature:

BLAST of Cla97C02G042610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60782.1	7.0e-41	81.98	hypothetical protein Csa_2G010180 [Cucumis sativus]	[more]
XP_021888699.1	2.1e-08	38.74	uncharacterized protein LOC110807772 [Carica papaya]	[more]
KHN31480.1	7.3e-06	43.84	hypothetical protein glysoja_035587 [Glycine soja] >KRH68765.1 hypothetical prot...	[more]
GAV66766.1	1.6e-05	40.21	hypothetical protein CFOL_v3_10276 [Cephalotus follicularis]	[more]
KDO39467.1	2.1e-05	48.48	hypothetical protein CISIN_1g044436mg [Citrus sinensis]	[more]

BLAST of Cla97C02G042610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ84\|A0A0A0LJ84_CUCSA	4.6e-41	81.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1	[more]
tr\|A0A2N9F903\|A0A2N9F903_FAGSY	2.2e-06	44.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1	[more]
tr\|I1JRQ4\|I1JRQ4_SOYBN	4.8e-06	43.84	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1	[more]
tr\|A0A0B2RDN7\|A0A0B2RDN7_GLYSO	4.8e-06	43.84	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_035587 PE=4 SV=1	[more]
tr\|A0A1Q3BFG1\|A0A1Q3BFG1_CEPFO	1.1e-05	40.21	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4...	[more]

BLAST of Cla97C02G042610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G042610 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G042610.1	Cla97C02G042610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 6..107
None	No IPR available	PANTHER	PTHR33592:SF2	SUBFAMILY NOT NAMED	coord: 6..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G042610	Cla013634	Watermelon (97103) v1	wmwmbB316
Cla97C02G042610	Csa2G010180	Cucumber (Chinese Long) v2	cuwmbB118
Cla97C02G042610	MELO3C004406	Melon (DHL92) v3.5.1	mewmbB376
Cla97C02G042610	ClCG02G016880	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G042610	CSPI02G02720	Wild cucumber (PI 183967)	cpiwmbB120
Cla97C02G042610	CmaCh05G012220	Cucurbita maxima (Rimu)	cmawmbB810
Cla97C02G042610	CmaCh12G011380	Cucurbita maxima (Rimu)	cmawmbB175
Cla97C02G042610	Lsi11G004200	Bottle gourd (USVL1VR-Ls)	lsiwmbB087
Cla97C02G042610	CsGy2G002820	Cucumber (Gy14) v2	cgybwmbB114
Cla97C02G042610	MELO3C004406.2	Melon (DHL92) v3.6.1	medwmbB367
Cla97C02G042610	CsaV3_2G003890	Cucumber (Chinese Long) v3	cucwmbB123

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G042610	Watermelon (97103) v2	wmbwmbB103
Cla97C02G042610	Silver-seed gourd	carwmbB1129
Cla97C02G042610	Cucumber (Gy14) v2	cgybwmbB122
Cla97C02G042610	Cucumber (Gy14) v1	cgywmbB213
Cla97C02G042610	Cucurbita moschata (Rifu)	cmowmbB161
Cla97C02G042610	Cucurbita moschata (Rifu)	cmowmbB785
Cla97C02G042610	Wild cucumber (PI 183967)	cpiwmbB131
Cla97C02G042610	Cucumber (Chinese Long) v3	cucwmbB132
Cla97C02G042610	Cucumber (Chinese Long) v2	cuwmbB129
Cla97C02G042610	Bottle gourd (USVL1VR-Ls)	lsiwmbB327
Cla97C02G042610	Watermelon (97103) v1	wmwmbB203
Cla97C02G042610	Watermelon (97103) v1	wmwmbB395
Cla97C02G042610	Wax gourd	wgowmbB128