CmaCh12G010600 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G010600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Rapid alkalinization factor 1, putative
Location	Cma_Chr12 : 8374184 .. 8375070 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATCTGGAGAAGATTTGAACGGAGTCAGGTAGGGATATAGCGGGACCCGTTTAAACGAAGAGTCACGACTCGACTCAATTTGAGACGGTTCCCACAAGTTAAATGGACTTTTTTGTCCTCTATTTCATCGTTCGAGCTCAATTTCGTATCATTTATGAAATGATCGGGGTTCGACCCTAGATGCTAGTATAAACAAGCTACATGAACATTCAACCTAAAACGACAGCGTTTTGCACTTGGGTGGAGTCGTTATCCCATGACGTCATAACAAAGACTAAAGAATGGCATATTCGTTATTAAGTGGAAATATAAGGGTAGATTTTCAGACCACGTTCTAAATAAGTCTTTCAACTGGCTTCATTACTGCTCGCTTTTTCTGTGCTAAAGAAGAAGAAGAAGAAACCACCGACGAATCGCCGGAGCGACTGCCGGAGCTGAAGAAACCGTCAATTCCGAGGAGACTTCAGATAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTGTTCTTGCATGGCAATGGCCGGATTCAATTCCTCGACATTCTTCCTGATCTGCGCCGCTGTGTTTGTGGTCTTCAGCTGCTCCTCAACCGCCGTCCACGGTGGTCTCGGGATCCACCACAGCCTCGGATGGATTCCTAACCAATCGACCTGCAAGGGCACAATAGCGGAGTGTTTCGGCGGAGAGGAGTTCGAATTCGATTCGGAAATCAGCCGCCGTATCTTGGCCACCAGTCAGTACATCAGCTACGGCGCTCTGCGGAGGAACACCGTGCCGTGCTCGAGACGCGGTGCATCATACTACAACTGCCAGCCCGGAGCTCAGGCCAACCCTTACAGCCGTGGATGCAGCGCCATTACAAGGTGCAGGAGTTGA

mRNA sequence

ATGGGGATCTGGAGAAGATTTGAACGGAGTCAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTGTTCTTGCATGGCAATGGCCGGATTCAATTCCTCGACATTCTTCCTGATCTGCGCCGCTGTGTTTGTGGTCTTCAGCTGCTCCTCAACCGCCGTCCACGGTGGTCTCGGGATCCACCACAGCCTCGGATGGATTCCTAACCAATCGACCTGCAAGGGCACAATAGCGGAGTGTTTCGGCGGAGAGGAGTTCGAATTCGATTCGGAAATCAGCCGCCGTATCTTGGCCACCAGTCAGTACATCAGCTACGGCGCTCTGCGGAGGAACACCGTGCCGTGCTCGAGACGCGGTGCATCATACTACAACTGCCAGCCCGGAGCTCAGGCCAACCCTTACAGCCGTGGATGCAGCGCCATTACAAGGTGCAGGAGTTGA

Coding sequence (CDS)

ATGGGGATCTGGAGAAGATTTGAACGGAGTCAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTGTTCTTGCATGGCAATGGCCGGATTCAATTCCTCGACATTCTTCCTGATCTGCGCCGCTGTGTTTGTGGTCTTCAGCTGCTCCTCAACCGCCGTCCACGGTGGTCTCGGGATCCACCACAGCCTCGGATGGATTCCTAACCAATCGACCTGCAAGGGCACAATAGCGGAGTGTTTCGGCGGAGAGGAGTTCGAATTCGATTCGGAAATCAGCCGCCGTATCTTGGCCACCAGTCAGTACATCAGCTACGGCGCTCTGCGGAGGAACACCGTGCCGTGCTCGAGACGCGGTGCATCATACTACAACTGCCAGCCCGGAGCTCAGGCCAACCCTTACAGCCGTGGATGCAGCGCCATTACAAGGTGCAGGAGTTGA

Protein sequence

MGIWRRFERSQRKRERERERERSCSCMAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHHSLGWIPNQSTCKGTIAECFGGEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS

Homology

[Close]

BLAST of CmaCh12G010600 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-31
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 67  WIPNQSTCKGTIAECF---GGEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASY 126
           ++P +S C GTIAEC      EEFE DSEI+RRILAT++YISYGALRRNTVPCSRRGASY
Sbjct: 33  FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASY 92

Query: 127 YNCQPGAQANPYSRGCSAITRCR 147
           YNC+ GAQANPYSRGCSAITRCR
Sbjct: 93  YNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of CmaCh12G010600 vs. Swiss-Prot
Match: RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 8.4e-30
Identity = 73/120 (60.83%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 34  SSTFFLICAAVFVVFSCSSTAVHGGLGIHHSLGWIP------NQSTCKGTIAECFGGEEF 93
           S T FL    + VVF  SS  V  G    + LG +       N S C G+IAEC G EE 
Sbjct: 4   SFTLFLTLT-ILVVFIISSPPVQAGFA--NDLGGVAWATTGDNGSGCHGSIAECIGAEEE 63

Query: 94  EFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 148
           E DSEI+RRILAT++YISY +L+RN+VPCSRRGASYYNCQ GAQANPYSRGCS I RCRS
Sbjct: 64  EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of CmaCh12G010600 vs. Swiss-Prot
Match: RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-29
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1


Query: 69  PNQSTCKGTIAEC-------------FGG----EEFEFDSEISRRILATSQYISYGALRR 128
           P ++ C+GTIAEC             +GG    EEFE DSEI+RRILAT +YISYGALRR
Sbjct: 42  PFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRR 101

Query: 129 NTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 147
           NT+PCSRRGASYYNC+ GAQANPYSRGCSAITRCR
Sbjct: 102 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136

[Close]

BLAST of CmaCh12G010600 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 66/110 (60.00%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 39  LICAAVFVVFSCSSTAVHGGLGIHHSLGWIPNQSTCKGTIAECFGGEE-FEFDSEISRRI 98
           ++C  +   F   S A  G  G +  +    +   CKG+I EC   EE FE DSE +RRI
Sbjct: 8   ILCVLIGAFFI--SMAAAGDSGAYDWVMPARSGGGCKGSIGECIAEEEEFELDSESNRRI 67

Query: 99  LATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 148
           LAT +YISYGAL++N+VPCSRRGASYYNC+PGAQANPYSRGCSAITRCRS
Sbjct: 68  LATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of CmaCh12G010600 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 1


Query: 72  STCKGTIAECFGGEE-FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGA 131
           S C G+IAEC   EE  EFDS+ISRRILA  +YISYGA+RRN+VPCSRRGASYYNCQ GA
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGA 102

Query: 132 QANPYSRGCSAITRCR 147
           QANPYSRGCS ITRCR
Sbjct: 103 QANPYSRGCSTITRCR 118

[Close]

BLAST of CmaCh12G010600 vs. TrEMBL
Match: A0A0A0LFW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G031140 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-58
Identity = 110/121 (90.91%), Postives = 115/121 (95.04%), Query Frame = 1


Query: 27  MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHHSLGWIPNQSTCKGTIAECFGGEE 86
           MAMAGFNS TFFLICAAVF++FSCSST VH GLGI HSL WIPNQSTCKG+IAECFGGEE
Sbjct: 1   MAMAGFNSPTFFLICAAVFLIFSCSSTTVHAGLGIQHSLAWIPNQSTCKGSIAECFGGEE 60

Query: 87  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 146
           FEFDSEI+RRILATSQYISYGALRRN VPCSRRGASYYNCQPGAQANPYSRGC+AITRCR
Sbjct: 61  FEFDSEINRRILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITRCR 120

Query: 147 S 148
           S
Sbjct: 121 S 121

[Close]

BLAST of CmaCh12G010600 vs. TrEMBL
Match: A5BUA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037723 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 79/115 (68.70%), Postives = 92/115 (80.00%), Query Frame = 1


Query: 33  NSSTFFLICAAVFVVFSCSSTAVH-GGLGIHHSLGWIPNQSTCKGTIAECFGGEEFEFDS 92
           NSS F LICA + V    +S+AV   G  +   LGWIP +S C+G+IAEC  GEEFE DS
Sbjct: 3   NSSAFVLICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDS 62

Query: 93  EISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 147
           EI+RRILA+ +YISYGAL RN+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCR
Sbjct: 63  EINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of CmaCh12G010600 vs. TrEMBL
Match: F6HDF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01490 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 79/115 (68.70%), Postives = 92/115 (80.00%), Query Frame = 1


Query: 33  NSSTFFLICAAVFVVFSCSSTAVH-GGLGIHHSLGWIPNQSTCKGTIAECFGGEEFEFDS 92
           NSS F LICA + V    +S+AV   G  +   LGWIP +S C+G+IAEC  GEEFE DS
Sbjct: 3   NSSAFVLICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDS 62

Query: 93  EISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 147
           EI+RRILA+ +YISYGAL RN+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCR
Sbjct: 63  EINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of CmaCh12G010600 vs. TrEMBL
Match: A0A061F478_THECC (Rapid alkalinization factor 1, putative OS=Theobroma cacao GN=TCM_026650 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-36
Identity = 77/110 (70.00%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 39  LICAAVFVVFSCSSTAVHGGLGIHHS-LGWIPNQSTCKGTIAECFGGEEFEFDSEISRRI 98
           +ICA +      ++T      G H   LGWIP  S CKG+IAEC  GEEF+ DSEISRRI
Sbjct: 9   VICAMIITAVVAATTRTVDASGEHERILGWIPTGSPCKGSIAECLAGEEFQLDSEISRRI 68

Query: 99  LATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 148
           LAT+QYISYGAL+RNTVPCSRRGASYYNCQPGAQANPYSRGC+ ITRCRS
Sbjct: 69  LATAQYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCNRITRCRS 118

[Close]

BLAST of CmaCh12G010600 vs. TrEMBL
Match: A0A067JU03_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23313 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.5e-36
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 1


Query: 29  MAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHH--SLGWIPNQSTCKGTIAECF---- 88
           MA   +S F +  A + ++   S T+     G HH  SLGWIP +S+CKG+IAEC     
Sbjct: 1   MAKSITSCFLMCGAMLMILILMSGTSTVEASGDHHQQSLGWIPIRSSCKGSIAECLASDD 60

Query: 89  GGEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAI 148
           GGEEFE DSEISRRILATS YISYGAL+RNTVPCSRRGASYYNCQ GAQANPY+RGCS I
Sbjct: 61  GGEEFELDSEISRRILATSNYISYGALQRNTVPCSRRGASYYNCQNGAQANPYTRGCSTI 120

[Close]

BLAST of CmaCh12G010600 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 67  WIPNQSTCKGTIAECF---GGEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASY 126
           ++P +S C GTIAEC      EEFE DSEI+RRILAT++YISYGALRRNTVPCSRRGASY
Sbjct: 33  FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASY 92

Query: 127 YNCQPGAQANPYSRGCSAITRCR 147
           YNC+ GAQANPYSRGCSAITRCR
Sbjct: 93  YNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of CmaCh12G010600 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-31
Identity = 73/120 (60.83%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 34  SSTFFLICAAVFVVFSCSSTAVHGGLGIHHSLGWIP------NQSTCKGTIAECFGGEEF 93
           S T FL    + VVF  SS  V  G    + LG +       N S C G+IAEC G EE 
Sbjct: 4   SFTLFLTLT-ILVVFIISSPPVQAGFA--NDLGGVAWATTGDNGSGCHGSIAECIGAEEE 63

Query: 94  EFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 148
           E DSEI+RRILAT++YISY +L+RN+VPCSRRGASYYNCQ GAQANPYSRGCS I RCRS
Sbjct: 64  EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of CmaCh12G010600 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-30
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1


Query: 69  PNQSTCKGTIAEC-------------FGG----EEFEFDSEISRRILATSQYISYGALRR 128
           P ++ C+GTIAEC             +GG    EEFE DSEI+RRILAT +YISYGALRR
Sbjct: 42  PFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRR 101

Query: 129 NTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 147
           NT+PCSRRGASYYNC+ GAQANPYSRGCSAITRCR
Sbjct: 102 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136

[Close]

BLAST of CmaCh12G010600 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-29
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 1


Query: 72  STCKGTIAECFGGEE-FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGA 131
           S C G+IAEC   EE  EFDS+ISRRILA  +YISYGA+RRN+VPCSRRGASYYNCQ GA
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGA 102

Query: 132 QANPYSRGCSAITRCR 147
           QANPYSRGCS ITRCR
Sbjct: 103 QANPYSRGCSTITRCR 118

[Close]

BLAST of CmaCh12G010600 vs. TAIR10
Match: AT2G33775.1 (AT2G33775.1 ralf-like 19)

HSP 1 Score: 80.5 bits (197), Expect = 9.6e-16
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 83  GGEEFEFDSEISRRILATSQ-YISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSA 142
           G  ++  DSE +RR LA  + YISYGALR+N VPCSRRG SYY+C+   +ANPY RGCS 
Sbjct: 42  GELDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSV 101

Query: 143 ITRC 146
           IT C
Sbjct: 102 ITHC 105

[Close]

BLAST of CmaCh12G010600 vs. NCBI nr
Match: gi|700205836|gb|KGN60955.1| (hypothetical protein Csa_2G031140 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.5e-58
Identity = 110/121 (90.91%), Postives = 115/121 (95.04%), Query Frame = 1


Query: 27  MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHHSLGWIPNQSTCKGTIAECFGGEE 86
           MAMAGFNS TFFLICAAVF++FSCSST VH GLGI HSL WIPNQSTCKG+IAECFGGEE
Sbjct: 1   MAMAGFNSPTFFLICAAVFLIFSCSSTTVHAGLGIQHSLAWIPNQSTCKGSIAECFGGEE 60

Query: 87  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 146
           FEFDSEI+RRILATSQYISYGALRRN VPCSRRGASYYNCQPGAQANPYSRGC+AITRCR
Sbjct: 61  FEFDSEINRRILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITRCR 120

Query: 147 S 148
           S
Sbjct: 121 S 121

[Close]

BLAST of CmaCh12G010600 vs. NCBI nr
Match: gi|659070254|ref|XP_008454184.1| (PREDICTED: protein RALF-like 33 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 1


Query: 27  MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHHSLGWIPNQSTCKGTIAECFGGEE 86
           MAMAGFNS TFFLI AAVF++FSCSSTAVH G+GI +SL WIPNQSTCKG+IAECFGGEE
Sbjct: 1   MAMAGFNSPTFFLISAAVFLIFSCSSTAVHAGIGIQNSLAWIPNQSTCKGSIAECFGGEE 60

Query: 87  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 146
           FEFDSEI+RRILATSQYISYGALRRN VPCSRRGASYYNCQPGAQANPYSRGC+AITRCR
Sbjct: 61  FEFDSEINRRILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITRCR 120

Query: 147 S 148
           S
Sbjct: 121 S 121

[Close]

BLAST of CmaCh12G010600 vs. NCBI nr
Match: gi|147862659|emb|CAN83593.1| (hypothetical protein VITISV_037723 [Vitis vinifera])

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 79/115 (68.70%), Postives = 92/115 (80.00%), Query Frame = 1


Query: 33  NSSTFFLICAAVFVVFSCSSTAVH-GGLGIHHSLGWIPNQSTCKGTIAECFGGEEFEFDS 92
           NSS F LICA + V    +S+AV   G  +   LGWIP +S C+G+IAEC  GEEFE DS
Sbjct: 3   NSSAFVLICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDS 62

Query: 93  EISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 147
           EI+RRILA+ +YISYGAL RN+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCR
Sbjct: 63  EINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of CmaCh12G010600 vs. NCBI nr
Match: gi|225432308|ref|XP_002273386.1| (PREDICTED: protein RALF-like 33 [Vitis vinifera])

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 79/115 (68.70%), Postives = 92/115 (80.00%), Query Frame = 1


Query: 33  NSSTFFLICAAVFVVFSCSSTAVH-GGLGIHHSLGWIPNQSTCKGTIAECFGGEEFEFDS 92
           NSS F LICA + V    +S+AV   G  +   LGWIP +S C+G+IAEC  GEEFE DS
Sbjct: 3   NSSAFVLICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDS 62

Query: 93  EISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 147
           EI+RRILA+ +YISYGAL RN+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCR
Sbjct: 63  EINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

[Close]

BLAST of CmaCh12G010600 vs. NCBI nr
Match: gi|297736875|emb|CBI26076.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 79/115 (68.70%), Postives = 92/115 (80.00%), Query Frame = 1


Query: 33  NSSTFFLICAAVFVVFSCSSTAVH-GGLGIHHSLGWIPNQSTCKGTIAECFGGEEFEFDS 92
           NSS F LICA + V    +S+AV   G  +   LGWIP +S C+G+IAEC  GEEFE DS
Sbjct: 37  NSSAFVLICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDS 96

Query: 93  EISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCR 147
           EI+RRILA+ +YISYGAL RN+VPCSRRGASYYNC+PGAQANPY+RGCSAITRCR
Sbjct: 97  EINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 151

The following BLAST results are available for this feature:

BLAST of CmaCh12G010600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF33_ARATH	5.8e-31	78.31	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]
RLF1_ARATH	8.4e-30	60.83	Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1	[more]
RLF23_ARATH	2.4e-29	68.42	Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1	[more]
RALF_TOBAC	2.1e-28	60.00	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]
RLF22_ARATH	7.9e-28	78.95	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]

BLAST of CmaCh12G010600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFW9_CUCSA	1.8e-58	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G031140 PE=4 SV=1	[more]
A5BUA5_VITVI	1.9e-36	68.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037723 PE=4 SV=1	[more]
F6HDF3_VITVI	1.9e-36	68.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01490 PE=4 SV=...	[more]
A0A061F478_THECC	3.2e-36	70.00	Rapid alkalinization factor 1, putative OS=Theobroma cacao GN=TCM_026650 PE=4 SV...	[more]
A0A067JU03_JATCU	5.5e-36	66.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23313 PE=4 SV=1	[more]

BLAST of CmaCh12G010600 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15800.1	3.3e-32	78.31	ralf-like 33	[more]
AT1G02900.1	4.7e-31	60.83	rapid alkalinization factor 1	[more]
AT3G16570.1	1.4e-30	68.42	rapid alkalinization factor 23	[more]
AT3G05490.1	4.4e-29	78.95	ralf-like 22	[more]
AT2G33775.1	9.6e-16	60.94	ralf-like 19	[more]

BLAST of CmaCh12G010600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205836\|gb\|KGN60955.1\|	2.5e-58	90.91	hypothetical protein Csa_2G031140 [Cucumis sativus]	[more]
gi\|659070254\|ref\|XP_008454184.1\|	1.4e-56	89.26	PREDICTED: protein RALF-like 33 [Cucumis melo]	[more]
gi\|147862659\|emb\|CAN83593.1\|	2.7e-36	68.70	hypothetical protein VITISV_037723 [Vitis vinifera]	[more]
gi\|225432308\|ref\|XP_002273386.1\|	2.7e-36	68.70	PREDICTED: protein RALF-like 33 [Vitis vinifera]	[more]
gi\|297736875\|emb\|CBI26076.3\|	2.7e-36	68.70	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0019722	calcium-mediated signaling
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004871	signal transducer activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G010600.1	CmaCh12G010600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 85..146 score: 6.8
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 15..147 score: 1.1
None	No IPR available	PANTHER	PTHR33136:SF5	PROTEIN RALF-LIKE 1-RELATED	coord: 15..147 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G010600	Cucsa.091080	Cucumber (Gy14) v1	cgycmaB0179
CmaCh12G010600	Cla019924	Watermelon (97103) v1	cmawmB170
CmaCh12G010600	Csa2G031140	Cucumber (Chinese Long) v2	cmacuB173
CmaCh12G010600	MELO3C004224	Melon (DHL92) v3.5.1	cmameB172
CmaCh12G010600	ClCG02G015440	Watermelon (Charleston Gray)	cmawcgB156
CmaCh12G010600	CSPI02G04290	Wild cucumber (PI 183967)	cmacpiB174
CmaCh12G010600	CmoCh12G010730	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G010600	Lsi11G005880	Bottle gourd (USVL1VR-Ls)	cmalsiB159
CmaCh12G010600	Cp4.1LG07g08990	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G010600	MELO3C004224.2	Melon (DHL92) v3.6.1	cmamedB187
CmaCh12G010600	CsaV3_2G006630	Cucumber (Chinese Long) v3	cmacucB0202
CmaCh12G010600	Cla97C02G041210	Watermelon (97103) v2	cmawmbB175
CmaCh12G010600	CsGy2G004400	Cucumber (Gy14) v2	cgybcmaB178
CmaCh12G010600	Carg23292	Silver-seed gourd	carcmaB1221
CmaCh12G010600	Carg26765	Silver-seed gourd	carcmaB1037

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G010600	Cucurbita maxima (Rimu)	cmacmaB190
CmaCh12G010600	Cucumber (Gy14) v1	cgycmaB0520
CmaCh12G010600	Cucurbita moschata (Rifu)	cmacmoB190
CmaCh12G010600	Wild cucumber (PI 183967)	cmacpiB160
CmaCh12G010600	Cucumber (Chinese Long) v2	cmacuB159
CmaCh12G010600	Melon (DHL92) v3.5.1	cmameB151
CmaCh12G010600	Watermelon (Charleston Gray)	cmawcgB159
CmaCh12G010600	Watermelon (97103) v1	cmawmB158
CmaCh12G010600	Cucurbita pepo (Zucchini)	cmacpeB171
CmaCh12G010600	Bottle gourd (USVL1VR-Ls)	cmalsiB178
CmaCh12G010600	Cucumber (Gy14) v2	cgybcmaB054
CmaCh12G010600	Melon (DHL92) v3.6.1	cmamedB166
CmaCh12G010600	Cucumber (Chinese Long) v3	cmacucB0184
CmaCh12G010600	Watermelon (97103) v2	cmawmbB180
CmaCh12G010600	Wax gourd	cmawgoB0182
CmaCh12G010600	Wax gourd	cmawgoB0236