Carg23292 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23292
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rapid ALkalinization Factor
Location	Cucurbita_argyrosperma_scaffold_231 : 225959 .. 227341 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCCGGATTCAATTCCTCGACATTCTTCCTGATCTGCGCCGCTGTGTTTGTGGTCTTCAGCTGCTCCTCAACCGCCGTTCACGGAGGCCTCGGGATCCAACACAGCCTCGGATGGATTCCTAACCAATCGACCTGCAAAGGCACAATAGCGGAGTGTTTCGGCGGAGAGGAGTTCGAATTCGATTCGGAAATCAGCCGACGTATCTTGGCCACCAGTCAGTACATCAGTTACGGCGCTCTGCGGAGGAACACCGTGCCGTGCTCGAGACGCGGTGCATCATACTACAACTGCCAGCCCGGAGCTCAGGCCAACCCTTACAGCCGTGGATGCAGCGCCATTACAAGGTGCAGGAGTTGAGTAATTTGTTTGTACTCTCTGTTTAATAATCTCTTTCTCTCCTTTCAATGTTCATTGATCTTTATTTTTTTCTTCTTTTTTTCCTCTTTTTTGAGATTGCTTTGGTTGTTATACAAATTGAAAAGGGGAGATTGATTATATAATGTCGTCGTTGTCGTTATTGTAAGTGATGAAAATTGTTGTGCTCAATTAATTATATATATATATCTTCTCAATAATGTGATATTCTATTCCTGGCTGGGATTTCTTTCCTCTTTCTTTCCTTTTGTCGATTGAAGGGAAAAGAGATTCTGCAAAGAGATTGAAGAACAAGAAAGGCTGTAATGGCTGGAATTAAGGAGAATTATGGCTCCCATCATGAGATAAGAGTAAGAACAAATTCATCAGTTGTTATAATTAGTATATTTCTCTTATAGAAACTGTGAAAGATTGTGTTTCTGATGCTGTTTTTGGGTTTAGATTAACTTTACAATGCCAATTTCTTTCCATTTTGGGTTTTGATCGGCTGACCAAACCATTTCCTTTCGTTTACTTGTTTTTTCTCTCTCTGTTCTCATCTGTTTATGGTAAAGAATCTTGAACTCTTTAGGAAAAATATTTAGAGAGGGAAGTTTTCCTTGAGAAATCATACCATACTACTGATTTGATTCTTGGTGCTCTTGAATTGGCTATCATGTTGAGGTTGGGTACTTTTCTTAGAACTTTCATTATGTTGACAAGAGAAGTAAATATCAAATATTTGTAACCATATGTATATGTGTGTGCATTGATTATGGTTTTACTTAGTTTTAGTATCATATTGAGGATAATTATGCATTCTAGAAGTAAAACTACTTCCATGGATTGCCCTAATGATCGAAAGGGCGAACCAGATGTTCTTGAGATGTATATGTCTGTGCATTGATTATGGTTTCAAGCTATGGTGTTGGTGGCTATCTATCTAGGATTTCCCGTTGTTATCTGAGGTTTGTTGAGATGTACATGATGTGGATGGGACTCATATTATATATTAGTATA

mRNA sequence

ATGGCAATGGCCGGATTCAATTCCTCGACATTCTTCCTGATCTGCGCCGCTGTGTTTGTGGTCTTCAGCTGCTCCTCAACCGCCGTTCACGGAGGCCTCGGGATCCAACACAGCCTCGGATGGATTCCTAACCAATCGACCTGCAAAGGCACAATAGCGGAGTGTTTCGGCGGAGAGGAGTTCGAATTCGATTCGGAAATCAGCCGACGTATCTTGGCCACCAGTCAGTACATCAGTTACGGCGCTCTGCGGAGGAACACCGTGCCGTGCTCGAGACGCGGTGCATCATACTACAACTGCCAGCCCGGAGCTCAGGCCAACCCTTACAGCCGTGGATGCAGCGCCATTACAAGGGAAAAGAGATTCTGCAAAGAGATTGAAGAACAAGAAAGGCTGTAATGGCTGGAATTAAGGAGAATTATGGCTCCCATCATGAGATAAGAGTAAGAACAAATTCATCAGTTGTTATAATTAGTATATTTCTCTTATAGAAACTGTGAAAGATTGTGTTTCTGATGCTGTTTTTGGGTTTAGATTAACTTTACAATGCCAATTTCTTTCCATTTTGGGTTTTGATCGGCTGACCAAACCATTTCCTTTCGTTTACTTGTTTTTTCTCTCTCTGTTCTCATCTGTTTATGGTAAAGAATCTTGAACTCTTTAGGAAAAATATTTAGAGAGGGAAGTTTTCCTTGAGAAATCATACCATACTACTGATTTGATTCTTGGTGCTCTTGAATTGGCTATCATGTTGAGGTTGGGTACTTTTCTTAGAACTTTCATTATGTTGACAAGAGAAGTAAATATCAAATATTTGTAACCATATGTATATGTGTGTGCATTGATTATGGTTTTACTTAGTTTTAGTATCATATTGAGGATAATTATGCATTCTAGAAGTAAAACTACTTCCATGGATTGCCCTAATGATCGAAAGGGCGAACCAGATGTTCTTGAGATGTATATGTCTGTGCATTGATTATGGTTTCAAGCTATGGTGTTGGTGGCTATCTATCTAGGATTTCCCGTTGTTATCTGAGGTTTGTTGAGATGTACATGATGTGGATGGGACTCATATTATATATTAGTATA

Coding sequence (CDS)

ATGGCAATGGCCGGATTCAATTCCTCGACATTCTTCCTGATCTGCGCCGCTGTGTTTGTGGTCTTCAGCTGCTCCTCAACCGCCGTTCACGGAGGCCTCGGGATCCAACACAGCCTCGGATGGATTCCTAACCAATCGACCTGCAAAGGCACAATAGCGGAGTGTTTCGGCGGAGAGGAGTTCGAATTCGATTCGGAAATCAGCCGACGTATCTTGGCCACCAGTCAGTACATCAGTTACGGCGCTCTGCGGAGGAACACCGTGCCGTGCTCGAGACGCGGTGCATCATACTACAACTGCCAGCCCGGAGCTCAGGCCAACCCTTACAGCCGTGGATGCAGCGCCATTACAAGGGAAAAGAGATTCTGCAAAGAGATTGAAGAACAAGAAAGGCTGTAA

Protein sequence

MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITREKRFCKEIEEQERL

Homology

[Close]

BLAST of Carg23292 vs. NCBI nr
Match: XP_022937540.1 (protein RALF-like 33 [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEE 60
           MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEE
Sbjct: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEE 60

Query: 61  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR
Sbjct: 61  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 118

[Close]

BLAST of Carg23292 vs. NCBI nr
Match: XP_022966015.1 (protein RALF-like 33 [Cucurbita maxima] >XP_023537429.1 protein RALF-like 33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.3 bits (617), Expect = 9.4e-61
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEE 60
           MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGI HSLGWIPNQSTCKGTIAECFGGEE
Sbjct: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHHSLGWIPNQSTCKGTIAECFGGEE 60

Query: 61  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR
Sbjct: 61  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 118

[Close]

BLAST of Carg23292 vs. NCBI nr
Match: KGN60955.1 (hypothetical protein Csa_2G031140 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEE 60
           MAMAGFNS TFFLICAAVF++FSCSST VH GLGIQHSL WIPNQSTCKG+IAECFGGEE
Sbjct: 1   MAMAGFNSPTFFLICAAVFLIFSCSSTTVHAGLGIQHSLAWIPNQSTCKGSIAECFGGEE 60

Query: 61  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           FEFDSEI+RRILATSQYISYGALRRN VPCSRRGASYYNCQPGAQANPYSRGC+AITR
Sbjct: 61  FEFDSEINRRILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITR 118

[Close]

BLAST of Carg23292 vs. NCBI nr
Match: XP_022150733.1 (protein RALF-like 33 [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 2.9e-54
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEE 60
           MAMAGF+S T FLICAAVFVVF+CSSTAVHGGLGI HSL WIP+QS+CKG+IAECFGGEE
Sbjct: 1   MAMAGFHSPT-FLICAAVFVVFTCSSTAVHGGLGIHHSLAWIPDQSSCKGSIAECFGGEE 60

Query: 61  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           FEFDSEISRRILATSQYISYGAL+RNTVPCSRRGASYYNCQPGAQANPY RGCSAITR
Sbjct: 61  FEFDSEISRRILATSQYISYGALKRNTVPCSRRGASYYNCQPGAQANPYGRGCSAITR 117

[Close]

BLAST of Carg23292 vs. NCBI nr
Match: XP_022999036.1 (protein RALF-like 33 [Cucurbita maxima])

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 3   MAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEEFE 62
           MAGFNS TF LICA VFVVFS SSTAV G LGIQHS+ WIPNQ+TCKG+IAECFGGEEFE
Sbjct: 1   MAGFNSPTFLLICATVFVVFSFSSTAVLGSLGIQHSVAWIPNQATCKGSIAECFGGEEFE 60

Query: 63  FDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           FDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR
Sbjct: 61  FDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 116

[Close]

BLAST of Carg23292 vs. TAIR10
Match: AT4G15800.1 (ralf-like 33)

HSP 1 Score: 130.2 bits (326), Expect = 9.5e-31
Identity = 72/122 (59.02%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 3   MAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAEC---FGGE 62
           M G ++    +I A + V F      +   +  Q S  ++P +S C GTIAEC      E
Sbjct: 1   MRGLSTKPVAIIIAILTVHF------LFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEE 60

Query: 63  EFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRE 122
           EFE DSEI+RRILAT++YISYGALRRNTVPCSRRGASYYNC+ GAQANPYSRGCSAITR 
Sbjct: 61  EFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRC 116

[Close]

BLAST of Carg23292 vs. TAIR10
Match: AT3G16570.1 (rapid alkalinization factor 23)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-29
Identity = 64/96 (66.67%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 43  PNQSTCKGTIAEC-------------FG----GEEFEFDSEISRRILATSQYISYGALRR 102
           P ++ C+GTIAEC             +G    GEEFE DSEI+RRILAT +YISYGALRR
Sbjct: 42  PFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRR 101

Query: 103 NTVPCSRRGASYYNCQPGAQANPYSRGCSAITREKR 122
           NT+PCSRRGASYYNC+ GAQANPYSRGCSAITR +R
Sbjct: 102 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of Carg23292 vs. TAIR10
Match: AT1G02900.1 (rapid alkalinization factor 1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-29
Identity = 70/117 (59.83%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 8   SSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWI------PNQSTCKGTIAECFGGEEF 67
           S T FL    + VVF  SS  V  G    + LG +       N S C G+IAEC G EE 
Sbjct: 4   SFTLFL-TLTILVVFIISSPPVQAGFA--NDLGGVAWATTGDNGSGCHGSIAECIGAEEE 63

Query: 68  EFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           E DSEI+RRILAT++YISY +L+RN+VPCSRRGASYYNCQ GAQANPYSRGCS I R
Sbjct: 64  EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIAR 117

[Close]

BLAST of Carg23292 vs. TAIR10
Match: AT3G05490.1 (ralf-like 22)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-28
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 46  STCKGTIAECFG-GEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGA 105
           S C G+IAEC    EE EFDS+ISRRILA  +YISYGA+RRN+VPCSRRGASYYNCQ GA
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGA 102

Query: 106 QANPYSRGCSAITREKR 122
           QANPYSRGCS ITR +R
Sbjct: 103 QANPYSRGCSTITRCRR 119

[Close]

BLAST of Carg23292 vs. TAIR10
Match: AT2G33775.1 (ralf-like 19)

HSP 1 Score: 78.2 bits (191), Expect = 4.3e-15
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 57  GGEEFEFDSEISRRILATSQ-YISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSA 116
           G  ++  DSE +RR LA  + YISYGALR+N VPCSRRG SYY+C+   +ANPY RGCS 
Sbjct: 42  GELDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSV 101

Query: 117 IT 118
           IT
Sbjct: 102 IT 103

[Close]

BLAST of Carg23292 vs. Swiss-Prot
Match: sp|Q8L9P8|RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-29
Identity = 72/122 (59.02%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 3   MAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAEC---FGGE 62
           M G ++    +I A + V F      +   +  Q S  ++P +S C GTIAEC      E
Sbjct: 1   MRGLSTKPVAIIIAILTVHF------LFAAVTSQSSGDFVPIESKCNGTIAECSLSTAEE 60

Query: 63  EFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRE 122
           EFE DSEI+RRILAT++YISYGALRRNTVPCSRRGASYYNC+ GAQANPYSRGCSAITR 
Sbjct: 61  EFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRC 116

[Close]

BLAST of Carg23292 vs. Swiss-Prot
Match: sp|Q9LUS7|RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-28
Identity = 64/96 (66.67%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 43  PNQSTCKGTIAEC-------------FG----GEEFEFDSEISRRILATSQYISYGALRR 102
           P ++ C+GTIAEC             +G    GEEFE DSEI+RRILAT +YISYGALRR
Sbjct: 42  PFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRR 101

Query: 103 NTVPCSRRGASYYNCQPGAQANPYSRGCSAITREKR 122
           NT+PCSRRGASYYNC+ GAQANPYSRGCSAITR +R
Sbjct: 102 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of Carg23292 vs. Swiss-Prot
Match: sp|Q9SRY3|RLF1_ARATH (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.5e-28
Identity = 70/117 (59.83%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 8   SSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWI------PNQSTCKGTIAECFGGEEF 67
           S T FL    + VVF  SS  V  G    + LG +       N S C G+IAEC G EE 
Sbjct: 4   SFTLFL-TLTILVVFIISSPPVQAGFA--NDLGGVAWATTGDNGSGCHGSIAECIGAEEE 63

Query: 68  EFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           E DSEI+RRILAT++YISY +L+RN+VPCSRRGASYYNCQ GAQANPYSRGCS I R
Sbjct: 64  EMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIAR 117

[Close]

BLAST of Carg23292 vs. Swiss-Prot
Match: sp|Q945T0|RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.1e-27
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 48  CKGTIAECFG-GEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQA 107
           CKG+I EC    EEFE DSE +RRILAT +YISYGAL++N+VPCSRRGASYYNC+PGAQA
Sbjct: 41  CKGSIGECIAEEEEFELDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQA 100

Query: 108 NPYSRGCSAITR 119
           NPYSRGCSAITR
Sbjct: 101 NPYSRGCSAITR 112

[Close]

BLAST of Carg23292 vs. Swiss-Prot
Match: sp|Q9MA62|RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.9e-27
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 46  STCKGTIAECFG-GEEFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGA 105
           S C G+IAEC    EE EFDS+ISRRILA  +YISYGA+RRN+VPCSRRGASYYNCQ GA
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGA 102

Query: 106 QANPYSRGCSAITREKR 122
           QANPYSRGCS ITR +R
Sbjct: 103 QANPYSRGCSTITRCRR 119

[Close]

BLAST of Carg23292 vs. TrEMBL
Match: tr|A0A0A0LFW9|A0A0A0LFW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031140 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 7.1e-57
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEE 60
           MAMAGFNS TFFLICAAVF++FSCSST VH GLGIQHSL WIPNQSTCKG+IAECFGGEE
Sbjct: 1   MAMAGFNSPTFFLICAAVFLIFSCSSTTVHAGLGIQHSLAWIPNQSTCKGSIAECFGGEE 60

Query: 61  FEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           FEFDSEI+RRILATSQYISYGALRRN VPCSRRGASYYNCQPGAQANPYSRGC+AITR
Sbjct: 61  FEFDSEINRRILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITR 118

[Close]

BLAST of Carg23292 vs. TrEMBL
Match: tr|A0A2C9VHY5|A0A2C9VHY5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G118000 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.7e-40
Identity = 86/110 (78.18%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 12  FLICAAVFVVFSC-SSTAVHGGLGIQHSLGWIPNQSTCKGTIAECF--GGEEFEFDSEIS 71
           F+ICAA+F++ S  +ST VHGG   QH LGWIP +S+CKG+IAEC    GEEFE DSEIS
Sbjct: 9   FMICAALFILISMNASTTVHGGGDHQHQLGWIPIRSSCKGSIAECLASNGEEFELDSEIS 68

Query: 72  RRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           RRILATS YISYGAL+RNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR
Sbjct: 69  RRILATSSYISYGALQRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 118

[Close]

BLAST of Carg23292 vs. TrEMBL
Match: tr|A0A2I4GPT3|A0A2I4GPT3_9ROSI (protein RALF-like 33 OS=Juglans regia OX=51240 GN=LOC109009756 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 86/117 (73.50%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 3   MAG-FNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFGGEEF 62
           MAG F SS  F ICA V +VFS SS+ VH G    H LG+IP  S+CKGT+AEC   EEF
Sbjct: 1   MAGIFYSSAVFGICALV-LVFSSSSSTVHAGGLSHHQLGFIPAGSSCKGTVAECLAAEEF 60

Query: 63  EFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           E  SEISRRILATS YISYGAL+RNTVPCSRRGASYYNCQ GAQANPYSRGCS+ITR
Sbjct: 61  ELGSEISRRILATSGYISYGALQRNTVPCSRRGASYYNCQGGAQANPYSRGCSSITR 116

[Close]

BLAST of Carg23292 vs. TrEMBL
Match: tr|A0A2C9VBI5|A0A2C9VBI5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G169900 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.8e-36
Identity = 81/119 (68.07%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 3   MAGFNSSTFFLICAAVFV-VFSCSSTAVHGGLGIQHSLGWIPNQSTCKGTIAECFG--GE 62
           MA   +S+F +  AA+F+ +   +S+ VHG     H LGWIP +S+CKG+IAEC    GE
Sbjct: 1   MANLLASSFLVCIAALFISILMSTSSTVHGSGEHLHHLGWIPIRSSCKGSIAECLAIDGE 60

Query: 63  EFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITR 119
           EFE DSEISRRILATS YISYGA++RNTVPCSRRGASYYNCQPGAQANPY+RGCSAITR
Sbjct: 61  EFELDSEISRRILATSNYISYGAMQRNTVPCSRRGASYYNCQPGAQANPYTRGCSAITR 119

[Close]

BLAST of Carg23292 vs. TrEMBL
Match: tr|A5BUA5|A5BUA5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037723 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 7   NSSTFFLICAAVFVVFSCSSTAV-HGGLGIQHSLGWIPNQSTCKGTIAECFGGEEFEFDS 66
           NSS F LICA + V    +S+AV   G  +Q  LGWIP +S C+G+IAEC  GEEFE DS
Sbjct: 3   NSSAFVLICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFEMDS 62

Query: 67  EISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITREKR 122
           EI+RRILA+ +YISYGAL RN+VPCSRRGASYYNC+PGAQANPY+RGCSAITR +R
Sbjct: 63  EINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCRR 118

The following BLAST results are available for this feature:

BLAST of Carg23292 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937540.1	2.5e-61	100.00	protein RALF-like 33 [Cucurbita moschata]	[more]
XP_022966015.1	9.4e-61	99.15	protein RALF-like 33 [Cucurbita maxima] >XP_023537429.1 protein RALF-like 33 [Cu...	[more]
KGN60955.1	1.1e-56	91.53	hypothetical protein Csa_2G031140 [Cucumis sativus]	[more]
XP_022150733.1	2.9e-54	90.68	protein RALF-like 33 [Momordica charantia]	[more]
XP_022999036.1	1.5e-53	91.38	protein RALF-like 33 [Cucurbita maxima]	[more]

BLAST of Carg23292 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15800.1	9.5e-31	59.02	ralf-like 33	[more]
AT3G16570.1	2.3e-29	66.67	rapid alkalinization factor 23	[more]
AT1G02900.1	3.1e-29	59.83	rapid alkalinization factor 1	[more]
AT3G05490.1	4.4e-28	76.62	ralf-like 22	[more]
AT2G33775.1	4.3e-15	61.29	ralf-like 19	[more]

BLAST of Carg23292 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L9P8\|RLF33_ARATH	1.7e-29	59.02	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
sp\|Q9LUS7\|RLF23_ARATH	4.2e-28	66.67	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
sp\|Q9SRY3\|RLF1_ARATH	5.5e-28	59.83	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
sp\|Q945T0\|RALF_TOBAC	6.1e-27	79.17	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
sp\|Q9MA62\|RLF22_ARATH	7.9e-27	76.62	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of Carg23292 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFW9\|A0A0A0LFW9_CUCSA	7.1e-57	91.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031140 PE=4 SV=1	[more]
tr\|A0A2C9VHY5\|A0A2C9VHY5_MANES	2.7e-40	78.18	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G118000 PE=4 SV=...	[more]
tr\|A0A2I4GPT3\|A0A2I4GPT3_9ROSI	1.1e-36	73.50	protein RALF-like 33 OS=Juglans regia OX=51240 GN=LOC109009756 PE=4 SV=1	[more]
tr\|A0A2C9VBI5\|A0A2C9VBI5_MANES	1.8e-36	68.07	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G169900 PE=4 SV=...	[more]
tr\|A5BUA5\|A5BUA5_VITVI	1.2e-35	68.10	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037723 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23292-RA	Carg23292-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 59..118 e-value: 5.1E-29 score: 100.8
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 9..118
None	No IPR available	PANTHER	PTHR33136:SF4	SUBFAMILY NOT NAMED	coord: 9..118

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23292	Cla019924	Watermelon (97103) v1	carwmB0885
Carg23292	Csa2G031140	Cucumber (Chinese Long) v2	carcuB0896
Carg23292	MELO3C004224	Melon (DHL92) v3.5.1	carmeB0870
Carg23292	ClCG02G015440	Watermelon (Charleston Gray)	carwcgB0858
Carg23292	CSPI02G04290	Wild cucumber (PI 183967)	carcpiB0916
Carg23292	Cucsa.091080	Cucumber (Gy14) v1	carcgyB1002
Carg23292	CmaCh05G011240	Cucurbita maxima (Rimu)	carcmaB1222
Carg23292	CmaCh12G010600	Cucurbita maxima (Rimu)	carcmaB1221
Carg23292	CmoCh05G011360	Cucurbita moschata (Rifu)	carcmoB1191
Carg23292	CmoCh12G010730	Cucurbita moschata (Rifu)	carcmoB1190
Carg23292	Lsi11G005880	Bottle gourd (USVL1VR-Ls)	carlsiB801
Carg23292	Cp4.1LG11g09060	Cucurbita pepo (Zucchini)	carcpeB1229
Carg23292	Cp4.1LG07g08990	Cucurbita pepo (Zucchini)	carcpeB1230
Carg23292	CsGy2G004400	Cucumber (Gy14) v2	carcgybB0868
Carg23292	MELO3C004224.2	Melon (DHL92) v3.6.1	carmedB0879
Carg23292	CsaV3_2G006630	Cucumber (Chinese Long) v3	carcucB0920
Carg23292	Cla97C02G041210	Watermelon (97103) v2	carwmbB0921

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None