CmaCh09G006820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G006820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pentatricopeptide repeat (PPR) superfamily protein, putative
Location	Cma_Chr09 : 3223201 .. 3224886 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGTTTTTGTGGGCATTGGTAGCTATGGCTCCCTTAATGCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGTATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCGAAAGAGAGGTGTAAACCCGAATGTCGTTACTTTTGGGACTTCGATTTATGGGCTCTCTCTCCATTTTAAGTTGAAAGAAGCATTGAGATTAAGAGAGGATATGGTGAATGTGTATAGATTTCACCTAATGCGTCAATATATGCTACTTTTATCAAAGGATTATGTGGGGTTGGATAATTGAATTTGGCTTTCAAGCTGGAGGAGGAGATGGTGACTAACAAGGTAAAATTAGACTCGGCAATTTATTCTACTTCAATTAGTGCTCGATGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAGCTCATTAGCAGGTGGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGTTTTTTAAACAGTTTAGTAAGAGGAAATGGCATGAATGTGGCTATATGGTCTAGTTTTGTTTGCAAGGAGAGTCTATCAGAAGCCTCCAAGTTACTTCCTTCATTGATGGGACGATCTTATAATTGCCATGTTTAAATTCTTGTTAGTCCTATTCTATCTACCAATTTAAACTTCTTGTCTCTTATAGGGTGAAACTCAACTTTCATCTCCCTGGTCTGGGCATCGCAAAGTAAGTTGACGTCGACCCATATGAAGTTGTTTTTGAATGGGTTAGAACGAACTTACTATCCATGTTTAGCATGAATGTGATTGTCACATTGGTTGGAGAGGAGAACAAAGCATTCCTTATGAGTGTGGAAACCTCTTTCTAGTAGACGTTTTAAAATCGTGAGGCTGATGGCGATACGTAACAGGCCAAAGCGGACAATATACTAGCAGTAGGCTTGGGCTATTGCAAATGGTATCAGAGCCCGACTCAAAGCGGTGTGCCAGCGAGGACATTGGGCCCCCAAGGGAGGTGGATTGTGAGATCCTACATCGATTGGTGAGGGAAACAAAGCATTCCTTGTATGAGTGTGGAAAGCTCTCCTTAGTAGACGCGTTTTAAAACCGAGAGGCTGATGGTGATACGTAACGGCCAAAGCATACAATATCTACTAGCGGTGAACTTCGACTGTTACAACAAAGAACTAGGGGATAGAGTGATGCACTCTAATGGATCCTAGGTCTCTCTCCATGCTCTATTTTGATCAGGATCTCTTCGATCCAATTGACAATAGACAATTGAGAGTCCCAGCAATAGCCTATTTCTCAAGGAAATAAGAACAAGGGAAGGAGCTATGAAGGGTCCTATTCTATTCAGCTCAGAACCAATTTGTCCAGATACTTGCTTCAGCTTGTGTCCTATCTAGTTGCAGTATATCTGGAACAATTACTGAACACAGGGATCTATCATGTTGAACAACGACATTAAGAGGTACAATTATTTCCATTCAGCACTATAAACTTATACATCTAGCAAGAATCCTTAGTTTATGTGCACAAACATGTAATGAGCATGAGTTACAGAATTTGCAGGCAGGCATGGTAATATCTTCACCTTCGCTTATTTCGGCTTCAATTTCAGTGCAGCACTGCAGAGAGTTTCATACACAATTCAGTTCAGGAAATTAGCAGCCACACAAGCAGAATGA

mRNA sequence

ATGGCGGAAGTTTTTGTGGGCATTGGTAGCTATGGCTCCCTTAATGCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGTATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCGAAAGAGAGTGCTCGATGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAGCTCATTAGCAGGTGGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGGTGAAACTCAACTTTCATCTCCCTGGTCTGGGCATCGCAAAGCATGGTAATATCTTCACCTTCGCTTATTTCGGCTTCAATTTCAGTGCAGCACTGCAGAGAGTTTCATACACAATTCAGTTCAGGAAATTAGCAGCCACACAAGCAGAATGA

Coding sequence (CDS)

ATGGCGGAAGTTTTTGTGGGCATTGGTAGCTATGGCTCCCTTAATGCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGTATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCGAAAGAGAGTGCTCGATGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAGCTCATTAGCAGGTGGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGGTGAAACTCAACTTTCATCTCCCTGGTCTGGGCATCGCAAAGCATGGTAATATCTTCACCTTCGCTTATTTCGGCTTCAATTTCAGTGCAGCACTGCAGAGAGTTTCATACACAATTCAGTTCAGGAAATTAGCAGCCACACAAGCAGAATGA

Protein sequence

MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKRVLDEMIFKGYVPRSESINKLISRWCQECNMELLGQVKLNFHLPGLGIAKHGNIFTFAYFGFNFSAALQRVSYTIQFRKLAATQAE

Homology

[Close]

BLAST of CmaCh09G006820 vs. TrEMBL
Match: A0A0A0KZF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622790 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-08
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 46  VLDEMIFKGYVPRSESINKLISRWCQECNMELLGQV 82
           +LDEMIFKGYVPR+ESINKL+ R CQECNMELL  +
Sbjct: 421 ILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMI 456

[Close]

BLAST of CmaCh09G006820 vs. TrEMBL
Match: A0A0D2W715_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G174100 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 1   MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKRVLDEMIFKGYVPRSE 60
           M +VF+G+  Y   +ACT+NILI A CL G LD AW++FDEM++        KG  P   
Sbjct: 145 MKQVFLGMEKYARPDACTYNILIRACCLNGCLDDAWNLFDEMQR--------KGVKPDQV 204

Query: 61  SINKLISRWCQECNME 77
           +   LI+  C E  ++
Sbjct: 205 TFGTLINALCVELKIK 212

[Close]

BLAST of CmaCh09G006820 vs. TrEMBL
Match: V5QPJ8_GOSHI (Pentatricopeptide repeat-containing protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 1   MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKRVLDEMIFKGYVPRSE 60
           M +VF+G+  Y   +ACT+NILI A CL G LD AW++FDEM++        KG  P   
Sbjct: 146 MKQVFLGMEKYARPDACTYNILIRACCLNGCLDDAWNLFDEMQR--------KGVKPDQV 205

Query: 61  SINKLISRWCQECNME 77
           +   LI+  C E  ++
Sbjct: 206 TFGTLINALCVELKIK 213

[Close]

BLAST of CmaCh09G006820 vs. TrEMBL
Match: A0A022QQI8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024126mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-06
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1


Query: 1   MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKRVLDEMIFKGYVPRSE 60
           M EV  GI  Y + +ACT+NI+I+A C+   L+ AW VFDEMR+R        G  P   
Sbjct: 146 MVEVISGIEKYAAPDACTYNIMINACCVMSDLERAWYVFDEMRRR--------GVEPNPV 205

Query: 61  SINKLISRWCQECNMEL 78
           +   LI+  C    +E+
Sbjct: 206 TFGTLINGLCVNSELEM 214

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BLAST of CmaCh09G006820 vs. NCBI nr
Match: gi|659103014|ref|XP_008452430.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 1   MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKR 46
           M EV VGIG++GS +ACTFNILIHAACLCG LDA W VFDEMRKR
Sbjct: 203 MMEVLVGIGNHGSPDACTFNILIHAACLCGDLDAVWGVFDEMRKR 247

[Close]

BLAST of CmaCh09G006820 vs. NCBI nr
Match: gi|449456681|ref|XP_004146077.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-11
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1


Query: 1   MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKR 46
           M +VFV I +YGS +ACTFNILIHAACLCG LDA W VFDEM+KR
Sbjct: 205 MTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQKR 249

[Close]

BLAST of CmaCh09G006820 vs. NCBI nr
Match: gi|700199862|gb|KGN55020.1| (hypothetical protein Csa_4G622790 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 6.1e-08
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 46  VLDEMIFKGYVPRSESINKLISRWCQECNMELLGQV 82
           +LDEMIFKGYVPR+ESINKL+ R CQECNMELL  +
Sbjct: 421 ILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMI 456

[Close]

BLAST of CmaCh09G006820 vs. NCBI nr
Match: gi|747071768|ref|XP_011082772.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Sesamum indicum])

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-07
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1


Query: 3   EVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKRVLDEMI--FKGYVPRSE 62
           EVF GIG Y S +ACT+NILI+A C+   L+ AW VFDEMR+R ++  +  F   +    
Sbjct: 155 EVFSGIGKYASPDACTYNILINAWCMRSDLERAWKVFDEMRRRGVEPNVVTFGTLIKGLC 214

Query: 63  SINKLISRWCQECNMELLGQVKLNFHL 88
           +I+KL   +  +  ME   +++ N H+
Sbjct: 215 AISKLDVAFSLKRRMERDFKIRPNAHI 241

[Close]

BLAST of CmaCh09G006820 vs. NCBI nr
Match: gi|823265726|ref|XP_012465585.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 isoform X2 [Gossypium raimondii])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 1   MAEVFVGIGSYGSLNACTFNILIHAACLCGYLDAAWDVFDEMRKRVLDEMIFKGYVPRSE 60
           M +VF+G+  Y   +ACT+NILI A CL G LD AW++FDEM++        KG  P   
Sbjct: 76  MKQVFLGMEKYARPDACTYNILIRACCLNGCLDDAWNLFDEMQR--------KGVKPDQV 135

Query: 61  SINKLISRWCQECNME 77
           +   LI+  C E  ++
Sbjct: 136 TFGTLINALCVELKIK 143

The following BLAST results are available for this feature:

BLAST of CmaCh09G006820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh09G006820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZF4_CUCSA	4.3e-08	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622790 PE=4 SV=1	[more]
A0A0D2W715_GOSRA	1.1e-06	40.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G174100 PE=4 SV=1	[more]
V5QPJ8_GOSHI	1.1e-06	40.79	Pentatricopeptide repeat-containing protein OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A022QQI8_ERYGU	6.8e-06	38.96	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024126mg PE=4 SV=1	[more]

BLAST of CmaCh09G006820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh09G006820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103014\|ref\|XP_008452430.1\|	9.1e-12	80.00	PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum...	[more]
gi\|449456681\|ref\|XP_004146077.1\|	7.7e-11	75.56	PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum...	[more]
gi\|700199862\|gb\|KGN55020.1\|	6.1e-08	77.78	hypothetical protein Csa_4G622790 [Cucumis sativus]	[more]
gi\|747071768\|ref\|XP_011082772.1\|	6.8e-07	40.23	PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Sesam...	[more]
gi\|823265726\|ref\|XP_012465585.1\|	1.5e-06	40.79	PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 isofor...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G006820.1	CmaCh09G006820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 14..43 score: 4.9
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 17..45 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 15..45 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 14..76 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G006820	MELO3C016677	Melon (DHL92) v3.5.1	cmameB045
CmaCh09G006820	CmoCh01G013300	Cucurbita moschata (Rifu)	cmacmoB041
CmaCh09G006820	Lsi04G019690	Bottle gourd (USVL1VR-Ls)	cmalsiB025
CmaCh09G006820	Cp4.1LG06g05450	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G006820	Cp4.1LG02g02270	Cucurbita pepo (Zucchini)	cmacpeB055
CmaCh09G006820	CsaV3_4G032750	Cucumber (Chinese Long) v3	cmacucB0032
CmaCh09G006820	Cla97C11G223130	Watermelon (97103) v2	cmawmbB021
CmaCh09G006820	Bhi09G002920	Wax gourd	cmawgoB0028
CmaCh09G006820	CsGy4G020900	Cucumber (Gy14) v2	cgybcmaB470
CmaCh09G006820	Carg03086	Silver-seed gourd	carcmaB0889
CmaCh09G006820	Carg14756	Silver-seed gourd	carcmaB0432

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh09G006820	CmaCh01G012760	Cucurbita maxima (Rimu)	cmacmaB045

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G006820	Cucumber (Gy14) v1	cgycmaB0076
CmaCh09G006820	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G006820	Wild cucumber (PI 183967)	cmacpiB024
CmaCh09G006820	Cucumber (Chinese Long) v2	cmacuB025
CmaCh09G006820	Melon (DHL92) v3.5.1	cmameB046
CmaCh09G006820	Watermelon (Charleston Gray)	cmawcgB016
CmaCh09G006820	Watermelon (97103) v1	cmawmB038
CmaCh09G006820	Melon (DHL92) v3.6.1	cmamedB044