MELO3C016677 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C016677
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPentatricopeptide repeat-containing family protein
Locationchr7 : 2921583 .. 2921828 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAAGGAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

mRNA sequence

CTAAAGGAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

Coding sequence (CDS)

CTAAAGGAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

Protein sequence

LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS*
Homology
[Close]
BLAST of MELO3C016677 vs. Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-08
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           +EA  ILDEM+FKGY PR + +   + +LC+   +E+L  V++SL RG   + D W+ ++
Sbjct: 380 EEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMI 439

Query: 62  AFLYKENLLESSNLIDSLIS 82
             + KE ++  S  ID L++
Sbjct: 440 PTMCKEPVISDS--IDLLLN 457

[Close]
BLAST of MELO3C016677 vs. TrEMBL
Match: A0A0A0KZF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622790 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1   LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARV 60
           LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWM+LNSLGRGNRMNMD WARV
Sbjct: 415 LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILNSLGRGNRMNMDMWARV 474

Query: 61  VAFLYKENLLESSNLIDSLIS 82
           VAF+YKENL ESSNLIDSLIS
Sbjct: 475 VAFVYKENLSESSNLIDSLIS 495

[Close]
BLAST of MELO3C016677 vs. TrEMBL
Match: A0A061G0T6_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao GN=TCM_014871 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           KEA  +LDEMIFKGYVP + SI+K V RLCQ+ NM+LL MVLNSL +GN ++ DTW  V+
Sbjct: 97  KEAAFVLDEMIFKGYVPHSASIHKFVSRLCQDGNMKLLLMVLNSLAKGNAIDQDTWLMVI 156

Query: 62  AFLYKENLLE-SSNLIDSLI 81
           + +Y+E+ L   S ++D+L+
Sbjct: 157 SKVYQEDKLSIVSEILDALM 176

[Close]
BLAST of MELO3C016677 vs. TrEMBL
Match: A0A067KII7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10578 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           KEA  +LDEMIFKG+ P + SI++ V+RLCQE N +LLW VLNSLG  N ++ D W   +
Sbjct: 203 KEAAFVLDEMIFKGFAPHSSSIHRFVNRLCQERNEDLLWSVLNSLGNTNVIDADLWNIAI 262

Query: 62  AFLYKENLLES-SNLIDSLI 81
           A + K N L S SN++DSLI
Sbjct: 263 AVVCKGNKLSSTSNVVDSLI 282

[Close]
BLAST of MELO3C016677 vs. TrEMBL
Match: A0A061F7L0_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_031884 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-14
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           KEA  ILDEMIFKGYVP   SI+K V  LCQ+ + +LL MVLNSL +GN ++ DTW  V+
Sbjct: 380 KEAAFILDEMIFKGYVPHCASIHKFVSGLCQKADKKLLLMVLNSLAKGNAIDQDTWLMVI 439

Query: 62  AFLYKENLLE-SSNLIDSLI 81
           + +Y+E+ L  SS+++D+L+
Sbjct: 440 SKVYQEDKLSISSDILDALM 459

[Close]
BLAST of MELO3C016677 vs. TrEMBL
Match: A0A061F8G6_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_031884 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-14
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           KEA  ILDEMIFKGYVP   SI+K V  LCQ+ + +LL MVLNSL +GN ++ DTW  V+
Sbjct: 380 KEAAFILDEMIFKGYVPHCASIHKFVSGLCQKADKKLLLMVLNSLAKGNAIDQDTWLMVI 439

Query: 62  AFLYKENLLE-SSNLIDSLI 81
           + +Y+E+ L  SS+++D+L+
Sbjct: 440 SKVYQEDKLSISSDILDALM 459

[Close]
BLAST of MELO3C016677 vs. TAIR10
Match: AT1G53330.1 (AT1G53330.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 9.8e-10
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           +EA  ILDEM+FKGY PR + +   + +LC+   +E+L  V++SL RG   + D W+ ++
Sbjct: 380 EEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMI 439

Query: 62  AFLYKENLLESSNLIDSLIS 82
             + KE ++  S  ID L++
Sbjct: 440 PTMCKEPVISDS--IDLLLN 457

[Close]
BLAST of MELO3C016677 vs. NCBI nr
Match: gi|659103014|ref|XP_008452430.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 8.0e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1   LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARV 60
           LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARV
Sbjct: 445 LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARV 504

Query: 61  VAFLYKENLLESSNLIDSLIS 82
           VAFLYKENLLESSNLIDSLIS
Sbjct: 505 VAFLYKENLLESSNLIDSLIS 525

[Close]
BLAST of MELO3C016677 vs. NCBI nr
Match: gi|659103014|ref|XP_008452430.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis melo])

HSP 1 Score: 30.8 bits (68), Expect = 1.4e+03
Identity = 15/48 (31.25%), Postives = 26/48 (54.17%), Query Frame = 1 

Query: 1   LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGR 49
           L+ A  ++DEM+ KG  P   S N ++  LC+E  ++    +L  + R
Sbjct: 375 LESANRVVDEMVEKGCKPDVISFNTIIGGLCKEGKLDKAMDLLEDMPR 422


HSP 2 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1   LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARV 60
           LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWM+LNSLGRGNRMNMD WARV
Sbjct: 415 LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILNSLGRGNRMNMDMWARV 474

Query: 61  VAFLYKENLLESSNLIDSLIS 82
           VAF+YKENL ESSNLIDSLIS
Sbjct: 475 VAFVYKENLSESSNLIDSLIS 495

[Close]
BLAST of MELO3C016677 vs. NCBI nr
Match: gi|449456681|ref|XP_004146077.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1   LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARV 60
           LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWM+LNSLGRGNRMNMD WARV
Sbjct: 447 LKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMILNSLGRGNRMNMDMWARV 506

Query: 61  VAFLYKENLLESSNLIDSLIS 82
           VAF+YKENL ESSNLIDSLIS
Sbjct: 507 VAFVYKENLSESSNLIDSLIS 527

[Close]
BLAST of MELO3C016677 vs. NCBI nr
Match: gi|590671365|ref|XP_007038311.1| (Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           KEA  +LDEMIFKGYVP + SI+K V RLCQ+ NM+LL MVLNSL +GN ++ DTW  V+
Sbjct: 97  KEAAFVLDEMIFKGYVPHSASIHKFVSRLCQDGNMKLLLMVLNSLAKGNAIDQDTWLMVI 156

Query: 62  AFLYKENLLE-SSNLIDSLI 81
           + +Y+E+ L   S ++D+L+
Sbjct: 157 SKVYQEDKLSIVSEILDALM 176

[Close]
BLAST of MELO3C016677 vs. NCBI nr
Match: gi|643725951|gb|KDP34798.1| (hypothetical protein JCGZ_10578 [Jatropha curcas])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-14
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 2   KEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVV 61
           KEA  +LDEMIFKG+ P + SI++ V+RLCQE N +LLW VLNSLG  N ++ D W   +
Sbjct: 203 KEAAFVLDEMIFKGFAPHSSSIHRFVNRLCQERNEDLLWSVLNSLGNTNVIDADLWNIAI 262

Query: 62  AFLYKENLLES-SNLIDSLI 81
           A + K N L S SN++DSLI
Sbjct: 263 AVVCKGNKLSSTSNVVDSLI 282

The following BLAST results are available for this feature:
BLAST of MELO3C016677 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR79_ARATH1.7e-0837.50Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th... [more]
BLAST of MELO3C016677 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZF4_CUCSA4.0e-3695.06Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622790 PE=4 SV=1[more]
A0A061G0T6_THECC1.3e-1555.00Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao ... [more]
A0A067KII7_JATCU1.5e-1455.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10578 PE=4 SV=1[more]
A0A061F7L0_THECC3.3e-1453.75Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1 OS=Theobr... [more]
A0A061F8G6_THECC3.3e-1453.75Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 2 OS=Theobr... [more]
BLAST of MELO3C016677 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53330.19.8e-1037.50 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of MELO3C016677 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659103014|ref|XP_008452430.1|8.0e-38100.00PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum... [more]
gi|659103014|ref|XP_008452430.1|1.4e+0331.25PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum... [more]
gi|449456681|ref|XP_004146077.1|5.7e-3695.06PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum... [more]
gi|590671365|ref|XP_007038311.1|1.9e-1555.00Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao][more]
gi|643725951|gb|KDP34798.1|2.1e-1455.00hypothetical protein JCGZ_10578 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048731 system development
biological_process GO:0009790 embryo development
biological_process GO:0010154 fruit development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016677T1MELO3C016677T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C016677Csa4G622790Cucumber (Chinese Long) v2cumeB307
MELO3C016677Cla023298Watermelon (97103) v1mewmB543
MELO3C016677ClCG11G017080Watermelon (Charleston Gray)mewcgB461
MELO3C016677Cla97C11G223130Watermelon (97103) v2mewmbB471
MELO3C016677Bhi09G002920Wax gourdmewgoB609
MELO3C016677CSPI04G22400Wild cucumber (PI 183967)cpimeB303
MELO3C016677Cucsa.058060Cucumber (Gy14) v1cgymeB045
MELO3C016677CmaCh09G006820Cucurbita maxima (Rimu)cmameB045
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016677Cucurbita moschata (Rifu)cmomeB034
MELO3C016677Watermelon (Charleston Gray)mewcgB480
MELO3C016677Bottle gourd (USVL1VR-Ls)lsimeB321
MELO3C016677Cucumber (Gy14) v2cgybmeB265
MELO3C016677Cucumber (Chinese Long) v3cucmeB309