Carg03086 (gene) Silver-seed gourd

Overview
NameCarg03086
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat
LocationCucurbita_argyrosperma_scaffold_008 : 1779889 .. 1781874 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGCAAGAGACTTATTTTGTTCCTCACGAAATCATTTATTGTTCTTCGGCCGAGCCCGCCATGCTGACCGTGCCTTCCAAGTGTTCGATAAAATTCCATCCTTTGGATGCAAGCGGACGGTGATATCTGCAAATTCGTTGTTGGATGCATTGTTGAAATGCCGGGAGTTTGAGAAAATGGTGGACGTTTTTTGTGGGCATTGGTAACTATGGCTCCCCTAATTCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGGATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCCACAGAGAGGTTTAAACCCGAATGTTATTACTTTTGGGACTTGATTTATGGGCTTTGAGATTAAGAGGGGATATGGTGAATGTATATAGATTTCACCTAATGCGTCAATATATGCTACTTTGATCAAAGGATTATGTGGGGTTGGATAATTGAATTTGGCTTTCAAGCTGAAGGAGGAGATGGTGACTAACAAGGTAAAATTAGACTCGGCAATTTATTCTACTTTAATTAGTGCTCAATGAGATGATCTTCAAGGGTTATGTGCTTCGTTCTGAAAGCATAAACAAGCTCATTAACAGGTTGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGTTTTAAACAGTTTAGTAAGAGGAAATGGCATGAATGTGGCTATATGGACTAGTTTTGTTTGCAAGGAGAGTCTATCAGAAGCCTCCAAGTTAATTCCTTCATTGATGAGTTTATGATTTCATAATGTTTTCAGGGACGATCTTATAATTTCCATGTTTAAATTCTTGTTAGTCCTATCCTATCTACCAGTTTAAACTTCTCTGTCTCTTATAGGGTGAAACTCAACTTTCATCTCCGTGGTCTGGGGATTGCAAAGTAAGATGACTCAACTTACAACACACATATGAAGTTGTTTTTGAATGGGTTAGAACGAACTTACTATCCATGGAATGTGAGATCTCACATCGGTTGGAAAGGGAAACGAAGCATTCCTTATAAGGGTGTGGAAATCTCTCCCTAGTAGACGTGTTTTAAAACCGTGAGGCTGACGGTGACACGTAATGGGCCAAAGCAGACAATATCTTCTAGCAGTGAACTTGAACTATTACAAATTGTATCAGAGCCAGACACCGAGCAGTGTACCAGTGAGGACGTTGGGCGCCCAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAATAAAACATTCCTTATAAAGGTGTGGAAACCTCGTCTTAGTAGACACGTTTTAAAATCGTGAGGCTGATGGCGATACGTAATGGGCCAAAGCGAACAATATCAGCTAGCGGTGTGCTTAAGCTATTATATCAAAGAACTAGGGGATAGAGTGATGCCCTCTAATGGATTCTAGATCACTCTCCATGCTCTATTTCGATCAGGATCTCTTTGATCCAATTGACAATAGACAAATGAGAGTCCCAGCAATAGCCTATTTCTCAAGGAAATAAGAATAAGGGAAGGAGCTATGAAGGGTCCTATTCTATTCAGCTCAGAATCAATTTGTCCACATACTTGCTCAGCTTGTGTCCTATCTAGCTCAAGTATATCTGGAACAATTACTCAAGACAGGGATCTATCATATTGAACAACGACACCAAAAGGTACAATTATTTCCATTCAGCACAATAAACTTATACATCTAGCAAGAATCCTTAGTTTATGTGCACAAACATGTAATGAGTATGAGTTACAGAATTTGCAGGCAGGCATAGTAATATCTTCACCTTAGCTTATTTCGGCTTCAATTTCAGTGCAGCACTGCAGAGAGTTTCATACACAATTCAGTTCTAGAAATTAGTAGACACACAAGCAGAATGAGCTAGTAACAGCAACATACCTATTGATGCAGTAACGCTTCCCAGTTGGCGGCGGTCCATCATCAAAGACATGGCCCAGATGAGCATCACAAGCAGCACAAAGAACTTCCTCTCGAGGCA

mRNA sequence

CAAGCAAGAGACTTATTTTGTTCCTCACGAAATCATTTATTGTTCTTCGGCCGAGCCCGCCATGCTGACCGTGCCTTCCAAGTGTTCGATAAAATTCCATCCTTTGGATGCAAGCGGACGGTGATATCTGCAAATTCGTTGTTGGATGCATTTTTGAGAAAATGGTGGACGTTTTTTGTGGGCATTGGTAACTATGGCTCCCCTAATTCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGGATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCCACAGAGAGGTTTAAACCCGAATCTGAAGGAGGAGATGGTGACTAACAAGGTTGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGTTTTAAACAGTTTAGTAAGAGGAAATGGCATGAATGTGGCTATATGGACTAGTTTTGTTTGCAAGGAGAGTCTATCAGAAGCCTCCAATAACGCTTCCCAGTTGGCGGCGGTCCATCATCAAAGACATGGCCCAGATGAGCATCACAAGCAGCACAAAGAACTTCCTCTCGAGGCA

Coding sequence (CDS)

CAAGCAAGAGACTTATTTTGTTCCTCACGAAATCATTTATTGTTCTTCGGCCGAGCCCGCCATGCTGACCGTGCCTTCCAAGTGTTCGATAAAATTCCATCCTTTGGATGCAAGCGGACGGTGATATCTGCAAATTCGTTGTTGGATGCATTTTTGAGAAAATGGTGGACGTTTTTTGTGGGCATTGGTAACTATGGCTCCCCTAATTCTTGTACATTTAACATTTTGATTCATGCTGCTTGTTTATGTGGGGATTTGGATGCTGCGTGGGATGTGTTCGATGAAATGCCACAGAGAGGTTTAAACCCGAATCTGAAGGAGGAGATGGTGACTAACAAGGTTGTGCCAGGAATGCAATATGGAGCTTTTGGGACAGTTTTAAACAGTTTAGTAAGAGGAAATGGCATGAATGTGGCTATATGGACTAGTTTTGTTTGCAAGGAGAGTCTATCAGAAGCCTCCAATAACGCTTCCCAGTTGGCGGCGGTCCATCATCAAAGACATGGCCCAGATGAGCATCACAAGCAGCACAAAGAACTTCCTCTCGAGGCA

Protein sequence

QARDLFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLRKWWTFFVGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNLKEEMVTNKVVPGMQYGAFGTVLNSLVRGNGMNVAIWTSFVCKESLSEASNNASQLAAVHHQRHGPDEHHKQHKELPLEA
Homology
[Close]
BLAST of Carg03086 vs. NCBI nr
Match: XP_022941521.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 7.3e-35
Identity = 76/106 (71.70%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRAR  DRAFQVFDKIPSFGCKRTV SANSLLDA L+     K    F
Sbjct: 103 IFC---NVISFYGRARLLDRAFQVFDKIPSFGCKRTVKSANSLLDALLKCREFEKMAEVF 162

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
           VGIGNYGSP++CTFNILIHAACLCGDLD AW+VFDEMP+RG+ PN+
Sbjct: 163 VGIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNV 205

[Close]
BLAST of Carg03086 vs. NCBI nr
Match: XP_022982178.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita maxima])

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRAR  DRAFQVFDKIPS+GCKRTV SANSLLDA L+     +    F
Sbjct: 85  IFC---NVISFYGRARLLDRAFQVFDKIPSYGCKRTVKSANSLLDALLKCREFERMAEVF 144

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
           VGIGNYGSP++CTFNILIHAACLCGDLD AW+VFDEMP+RG+ PN+
Sbjct: 145 VGIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNV 187

[Close]
BLAST of Carg03086 vs. NCBI nr
Match: XP_023523314.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 8.0e-34
Identity = 74/106 (69.81%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRAR  DRAFQVFDKIPS+GCKRTV SANSLLDA L+     K    F
Sbjct: 85  IFC---NVISFYGRARLLDRAFQVFDKIPSYGCKRTVKSANSLLDALLKCREFEKMAEVF 144

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
           V IGNYGSP++CTFNILIHAACLCGDLD AW+VFDEMP+RG+ PN+
Sbjct: 145 VSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNV 187

[Close]
BLAST of Carg03086 vs. NCBI nr
Match: XP_008452430.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 3.2e-30
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRAR  DRAFQVF++IP+F CKRTV S NSLLDA L+     K     
Sbjct: 151 IFC---NVIAFYGRARLPDRAFQVFERIPTFRCKRTVKSVNSLLDALLKSREFGKMMEVL 210

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
           VGIGN+GSP++CTFNILIHAACLCGDLDA W VFDEM +RG+ PN+
Sbjct: 211 VGIGNHGSPDACTFNILIHAACLCGDLDAVWGVFDEMRKRGVQPNV 253

[Close]
BLAST of Carg03086 vs. NCBI nr
Match: XP_022131752.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRAR  DRAFQVF++IPSFGC RTV SANSLLDA L+     K    F
Sbjct: 85  IFC---NVISFYGRARLPDRAFQVFERIPSFGCNRTVKSANSLLDALLKCREFEKMAEVF 144

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
           VGIG+YGSP++CTFNILIHAA LCG+ D AW+VFDEM +RG++PN+
Sbjct: 145 VGIGSYGSPDACTFNILIHAAYLCGNSDDAWEVFDEMRKRGIHPNV 187

[Close]
BLAST of Carg03086 vs. TAIR10
Match: AT1G53330.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-14
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + FFGR +   RA  +FD++P + C+RTV S NSLL A L+     K     
Sbjct: 85  IFC---NVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERL 144

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQR 100
             I  +G P++CT+NILIH     G  D A  +FDEM ++
Sbjct: 145 SSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVKK 181

[Close]
BLAST of Carg03086 vs. TAIR10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 31/95 (32.63%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 16  FGRARHADRAFQVFDK-IPSFGCKRTVISANSLLDAFL-----RKWWTFFVGIGNYG--- 75
           +G+A   D+A  +F + +  F CKR+V S NS+L+  +      +   F+  + N     
Sbjct: 122 YGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNM 181

Query: 76  --SPNSCTFNILIHAACLCGDLDAAWDVFDEMPQR 100
             SPN  +FN++I A C    +D A +VF  MP+R
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPER 216

[Close]
BLAST of Carg03086 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 16  FGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLRK------WWTFFVGIGNYG-SP 75
           +G A   + + ++F +IP FG KR+V S N+LL+  ++          F     ++G +P
Sbjct: 130 YGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITP 189

Query: 76  NSCTFNILIHAACLCGDLDAAWDVFDEM 97
           N  T N+L+ A C   D+++A+ V DE+
Sbjct: 190 NIFTCNLLVKALCKKNDIESAYKVLDEI 217

[Close]
BLAST of Carg03086 vs. TAIR10
Match: AT3G14580.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-06
Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = 0 

Query: 19  ARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFFVGIGNYG-SPNSCT 78
           A   +RA ++   +P FGC  +  S N +L+  +      +    FV     G   ++C 
Sbjct: 145 AGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACC 204

Query: 79  FNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
            NILI   C  G+L+AA  + DE PQ+   PN+
Sbjct: 205 LNILIKGLCESGNLEAALQLLDEFPQQKSRPNV 237

[Close]
BLAST of Carg03086 vs. TAIR10
Match: AT2G18520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05
Identity = 36/142 (25.35%), Postives = 64/142 (45.07%), Query Frame = 0 

Query: 16  FGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR--------KWWTFFVGIGNYGS 75
           +GRA   D A ++F+++   G  RTV+S N+LL A L         + +  F    N  +
Sbjct: 112 YGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNIT 171

Query: 76  PNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNLKEEMVTNKVVPGMQYGAFGTVL 135
           P+  ++ +LI + C  G  + A ++  +M  +G+   +                AF T+L
Sbjct: 172 PDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTII---------------AFTTIL 231

Query: 136 NSLVRGNGMNVA--IWTSFVCK 148
            SL +   ++ A  +W   V K
Sbjct: 232 GSLYKNGLVDEAESLWIEMVNK 238

[Close]
BLAST of Carg03086 vs. Swiss-Prot
Match: sp|Q9MAG8|PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana OX=3702 GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + FFGR +   RA  +FD++P + C+RTV S NSLL A L+     K     
Sbjct: 85  IFC---NVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERL 144

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQR 100
             I  +G P++CT+NILIH     G  D A  +FDEM ++
Sbjct: 145 SSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVKK 181

[Close]
BLAST of Carg03086 vs. Swiss-Prot
Match: sp|O49436|PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.1e-05
Identity = 31/95 (32.63%), Postives = 50/95 (52.63%), Query Frame = 0 

Query: 16  FGRARHADRAFQVFDK-IPSFGCKRTVISANSLLDAFL-----RKWWTFFVGIGNYG--- 75
           +G+A   D+A  +F + +  F CKR+V S NS+L+  +      +   F+  + N     
Sbjct: 122 YGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNM 181

Query: 76  --SPNSCTFNILIHAACLCGDLDAAWDVFDEMPQR 100
             SPN  +FN++I A C    +D A +VF  MP+R
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPER 216

[Close]
BLAST of Carg03086 vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.3e-05
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 16  FGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLRK------WWTFFVGIGNYG-SP 75
           +G A   + + ++F +IP FG KR+V S N+LL+  ++          F     ++G +P
Sbjct: 130 YGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITP 189

Query: 76  NSCTFNILIHAACLCGDLDAAWDVFDEM 97
           N  T N+L+ A C   D+++A+ V DE+
Sbjct: 190 NIFTCNLLVKALCKKNDIESAYKVLDEI 217

[Close]
BLAST of Carg03086 vs. Swiss-Prot
Match: sp|Q9LUD6|PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = 0 

Query: 19  ARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFFVGIGNYG-SPNSCT 78
           A   +RA ++   +P FGC  +  S N +L+  +      +    FV     G   ++C 
Sbjct: 145 AGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACC 204

Query: 79  FNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
            NILI   C  G+L+AA  + DE PQ+   PN+
Sbjct: 205 LNILIKGLCESGNLEAALQLLDEFPQQKSRPNV 237

[Close]
BLAST of Carg03086 vs. Swiss-Prot
Match: sp|Q9ZU67|PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g18520 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-04
Identity = 36/142 (25.35%), Postives = 64/142 (45.07%), Query Frame = 0 

Query: 16  FGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR--------KWWTFFVGIGNYGS 75
           +GRA   D A ++F+++   G  RTV+S N+LL A L         + +  F    N  +
Sbjct: 112 YGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNIT 171

Query: 76  PNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNLKEEMVTNKVVPGMQYGAFGTVL 135
           P+  ++ +LI + C  G  + A ++  +M  +G+   +                AF T+L
Sbjct: 172 PDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTII---------------AFTTIL 231

Query: 136 NSLVRGNGMNVA--IWTSFVCK 148
            SL +   ++ A  +W   V K
Sbjct: 232 GSLYKNGLVDEAESLWIEMVNK 238

[Close]
BLAST of Carg03086 vs. TrEMBL
Match: tr|A0A1S3BT71|A0A1S3BT71_CUCME (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo OX=3656 GN=LOC103493464 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.1e-30
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRAR  DRAFQVF++IP+F CKRTV S NSLLDA L+     K     
Sbjct: 151 IFC---NVIAFYGRARLPDRAFQVFERIPTFRCKRTVKSVNSLLDALLKSREFGKMMEVL 210

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNL 106
           VGIGN+GSP++CTFNILIHAACLCGDLDA W VFDEM +RG+ PN+
Sbjct: 211 VGIGNHGSPDACTFNILIHAACLCGDLDAVWGVFDEMRKRGVQPNV 253

[Close]
BLAST of Carg03086 vs. TrEMBL
Match: tr|A0A0A0KZF4|A0A0A0KZF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622790 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.1e-22
Identity = 62/111 (55.86%), Postives = 72/111 (64.86%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRA   DRAFQVF++IPSF CKRTV S NSLL A L+     K    F
Sbjct: 153 IFC---NVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKSVNSLLAALLKNRQLEKMTQVF 212

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNLKEEMV 111
           V I NYGSP++CTFNILIHAACLCGDLDA  +             LKE+MV
Sbjct: 213 VDISNYGSPDACTFNILIHAACLCGDLDALKEAL----------RLKEDMV 250

[Close]
BLAST of Carg03086 vs. TrEMBL
Match: tr|M5WZC0|M5WZC0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G218700 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.8e-21
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRA   DRA Q+FD+IP+F C RTV S NSLL+A L+     K W FF
Sbjct: 86  IFC---NVISFYGRAHLPDRALQMFDEIPTFRCHRTVKSLNSLLNALLKCGEFEKMWKFF 145

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPN 105
           VGI  Y +P++CT+NIL+ A C    LD AW V DEM ++G+ PN
Sbjct: 146 VGIDKYATPDACTYNILMKACCSNEYLDDAWKVLDEMSRKGIPPN 187

[Close]
BLAST of Carg03086 vs. TrEMBL
Match: tr|A0A2I4GZ36|A0A2I4GZ36_9ROSI (putative pentatricopeptide repeat-containing protein At1g53330 OS=Juglans regia OX=51240 GN=LOC109012117 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.8e-21
Identity = 65/151 (43.05%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRA   DRA Q F+ I  + CKRTV SANSLL+A LR     K    F
Sbjct: 84  IFC---NVISFYGRANLPDRAIQTFESITGYRCKRTVKSANSLLNALLRCGEFEKVRETF 143

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPNLKEEMVTNKVVPGMQ 124
           +GI   G+P++CT+NILIHA C  G LD AW+VFDEM +RG+ PN+              
Sbjct: 144 LGIYKDGTPDACTYNILIHACCRIGSLDDAWNVFDEMQRRGVFPNVV------------- 203

Query: 125 YGAFGTVLNSLVRGNGMNVAIWTSFVCKESL 151
              FGT++  L     MN  +  +F  KE +
Sbjct: 204 --TFGTLMYQLC----MNFRLKEAFQLKEDM 212

[Close]
BLAST of Carg03086 vs. TrEMBL
Match: tr|A0A2P5BGG9|A0A2P5BGG9_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_241150 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 0 

Query: 5   LFCSSRNHLLFFGRARHADRAFQVFDKIPSFGCKRTVISANSLLDAFLR-----KWWTFF 64
           +FC   N + F+GRAR   +AFQ+FD+IPSF C RTV S N++LD   +     K   F 
Sbjct: 84  IFC---NVISFYGRARLPHKAFQMFDQIPSFRCDRTVKSYNTVLDVLFKCGEVEKMREFL 143

Query: 65  VGIGNYGSPNSCTFNILIHAACLCGDLDAAWDVFDEMPQRGLNPN 105
           VG+GN+ +P++CT+NILI+A C  G LD AW+ FDEM +RG+ PN
Sbjct: 144 VGLGNHVTPDACTYNILINACCKSGCLDDAWNTFDEMRKRGVRPN 185

The following BLAST results are available for this feature:
BLAST of Carg03086 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941521.17.3e-3571.70LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53... [more]
XP_022982178.13.6e-3469.81putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita maxima... [more]
XP_023523314.18.0e-3469.81putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo s... [more]
XP_008452430.13.2e-3064.15PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum... [more]
XP_022131752.11.6e-2964.15putative pentatricopeptide repeat-containing protein At1g53330 [Momordica charan... [more]
BLAST of Carg03086 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53330.11.0e-1441.00Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G20090.11.7e-0632.63Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G16420.13.0e-0631.82Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G14580.16.6e-0631.18Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G18520.12.5e-0525.35Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg03086 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9MAG8|PPR79_ARATH1.8e-1341.00Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th... [more]
sp|O49436|PP327_ARATH3.1e-0532.63Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX... [more]
sp|Q9FFE3|PP388_ARATH5.3e-0531.82Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
sp|Q9LUD6|PP230_ARATH1.2e-0431.18Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidop... [more]
sp|Q9ZU67|PP162_ARATH4.5e-0425.35Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidop... [more]
BLAST of Carg03086 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BT71|A0A1S3BT71_CUCME2.1e-3064.15putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo O... [more]
tr|A0A0A0KZF4|A0A0A0KZF4_CUCSA6.1e-2255.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622790 PE=4 SV=1[more]
tr|M5WZC0|M5WZC0_PRUPE8.8e-2151.43Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G218700 PE=4 SV=1[more]
tr|A0A2I4GZ36|A0A2I4GZ36_9ROSI8.8e-2143.05putative pentatricopeptide repeat-containing protein At1g53330 OS=Juglans regia ... [more]
tr|A0A2P5BGG9|A0A2P5BGG9_PARAD1.2e-2050.48Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_241150 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03086-RACarg03086-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 67..96
e-value: 5.2E-11
score: 42.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 71..104
e-value: 1.7E-9
score: 35.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 69..103
score: 12.759
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 8..169
e-value: 2.7E-17
score: 65.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..184
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 14..112
NoneNo IPR availablePANTHERPTHR24015:SF538SUBFAMILY NOT NAMEDcoord: 14..112