CmaCh09G005630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G005630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding protein 24
Location	Cma_Chr09 : 2554907 .. 2557992 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACCATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTGACTAAAGTGTTTGTTGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATAACGGATAAGAACACCTCCAAATCCAAAGGATACGGTTTTGTAAGTTAGCCTTGTAATTATTTAAGTTTTGGAGTTCCGTGGTGATTTAAATCATTATTCAGGTAACGTTTCGAGATGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGTCGGTATTATAGTTCATCTCTATCGTTTTTACCACGATTGTTGTTTATTCAAATTTTTGTTTTGCTATTCAGGACGAGGGCAGGGTGGCGTAAATCCCTATCAAGGAAGTACAATGCAAGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCCCCTGTTGTTTATTCACCATACGGGTTAGTCAAGTTATTATCGAATTAGAAATTTGGGTAGAAATCATGAAGATTAAATTGAAATTAAGGGTTAAACTAAATCAAATATGCGATTATTGATCCGTTAAACAAAAGATTAAACGGGTTTAGAAATTGGGTATGAATGGAAACATATGGACCCACGTCTGCATATCTCTATAATATTATGATACTATTCACTTTAAACAAAAACGCTCGAAATATACTCAATTATAAGTTATGTATCGCTCGGTTTTCTACGTGGGTCTAGATTAGTCTACGGTTTCATTTGAAAAGAAAGAAAGGGTAGTCGGGTCAAAATCATTTTTGTGAGATCCCACGTCGATTAAAGAGAAGAACGAAACAAATCTGTCACTAGTAGACGTGTTTTAAATTTTTTTTTTAAAGGGTATGAAAATATCTGCTAACGGTGGATTTAGACTGTTAGAGTGGAGCCAACGAGCTCCGCCCCACCGACCAATCGACAAACCCAAAACCAATACAACTGTAACACCAACCAATGTGTTTACAACTGTCCCAAAGTCCCATTTGAGCTAAGGTTCTTCATAAAAAGAATAGAAATTCTACAACAATATTTTCCACTAAGCAATTAATTCCCATCCCAACCCACTTGGTTCTTTTTCTTGGCTTTGCAGATACCCAACATACACTCCTGATTATGGCTACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCATGAAAAGTCACCATAAACCCTAACTAACTTATAAAAAGCATTGAATTTTAGCAACCAGTGTACAACCCATATTTCTATGGCTATTCCGTACAATCCCCCAGAGGAGCATTTCCCATTCCTTCGCAGTCGCATCAGCCCCGTGTAGCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCTCAGTATGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAATTTTTGGAATTATATATGAACAATAAAAAAGACATCTGACAGGAACAGACAAACAGATAAATAGATTATTATTATTATTAATATAAGGTAAAAAAAGAAAGAAATAAAAATGGGGGCCATGTGGGTAAAGAGCTAAAGCCATGTGAGTGAGCTGTCTGGGCCAATGCAATTGTTGAAAGGAAATTGATGACAGAGTAGCATTTCATTATATAGACAGCTACTGCATTCCCCATGTGTGGTTCAGTTTCCAACCTATTACTATTCTCAACCCCTTTCTCCTGGTATCCCGTCTCGATGTGATTGATAGTTTTGTATTTAGATGATTCTTAGAGGTCACCCGAATCGACCCCTCTTAGCCAATGTTCGAATTGGCTGATCATAAACTTAGCATATCTCTAGTAGACTAACGCCGATATGTAACGAGTCAAAACAGACAATATCTATTACAAATGGTATCAGGGTCGACACTGGAGGACAATGTGTCACCGAGAACGTTGGCCTCTAAAAACGTGTATTGTGAGATCCCATATCAATTGGGAAACAAAGCATTTCTTATAACGGACGGCTAACATACAGGCCAAAATGAACAATAATATTACTAACAAAGAGATAGAGTTATTACAGTAACAATGAGCTGTGTCCAGTTGTCTTTTAAAATGGACCACTTCCAAATTCCAAGCTTCCAACCTTTTCTTTTTGGGTCTCATTTAGAGATAGCACGAGTTAGGTTGTAAAAAATTTTAAAAATCTCATTTTGGAGCGTATACGGGTTTATAGTTGTAATTTTTTCCGACTAACCCGAAATTTGAGATTGGTTGGTCAGCTAGTCTCGACCTGACATAGTTCACAACCCAATAAAAAACACTCAGCTTTCTATTTTAGTTGGTCGGGTTGATCTAACAAAAAAAAAAAAAAAAAAAAAAAACTCCGACCCACAAACTATACCTACAAAAATATAACCTAATCCTTAATTTTTATAATTTTAGTTGAGTAGTTCGAGTTTTATCATTAATAAATTACAATAATTAAATTAGGTTTATATTAATATGTATTAATGATGGGTTTCAGATTCACAGACATCTCAGCAAACTCCTACCGAAGCTGAAGCTGAAGCTGTTACCTCTGAAACTTCAACCACCTGAAAGAAGAATTCATAAAAATCAAACCAAACCAAACCGAACCGAACTGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCAAAAAAAGGAAGAAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTCGATCGATTTGACCGTCTTTTTCACCCATTTTTTCCTTTTTTTTTTTAATTATTATTATTTATTCCATTTTAATTTTGATGGATTTTTTTCATTGTACTCGAGTTAGGATTTTAATTTTTGTTATAATTTAACGTGTAAGAGTAGAGATTCGAACA

mRNA sequence

CGACCATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTGACTAAAGTGTTTGTTGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATAACGGATAAGAACACCTCCAAATCCAAAGGATACGGTTTTGTAACGTTTCGAGATGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAATCCCTATCAAGGAAGTACAATGCAAGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCCCCTGTTGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCCGTACAATCCCCCAGAGGAGCATTTCCCATTCCTTCGCAGTCGCATCAGCCCCGTGTAGCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCTCAGTATGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTACCGAAGCTGAAGCTGAAGCTGTTACCTCTGAAACTTCAACCACCTGAAAGAAGAATTCATAAAAATCAAACCAAACCAAACCGAACCGAACTGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCAAAAAAAGGAAGAAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTCGATCGATTTGACCGTCTTTTTCACCCATTTTTTCCTTTTTTTTTTTAATTATTATTATTTATTCCATTTTAATTTTGATGGATTTTTTTCATTGTACTCGAGTTAGGATTTTAATTTTTGTTATAATTTAACGTGTAAGAGTAGAGATTCGAACA

Coding sequence (CDS)

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTGACTAAAGTGTTTGTTGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATAACGGATAAGAACACCTCCAAATCCAAAGGATACGGTTTTGTAACGTTTCGAGATGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAATCCCTATCAAGGAAGTACAATGCAAGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCCCCTGTTGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCCGTACAATCCCCCAGAGGAGCATTTCCCATTCCTTCGCAGTCGCATCAGCCCCGTGTAGCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCTCAGTATGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTACCGAAGCTGAAGCTGAAGCTGTTACCTCTGAAACTTCAACCACCTGA

Protein sequence

MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSETSTT

Homology

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BLAST of CmaCh09G005630 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-25
Identity = 79/168 (47.02%), Postives = 101/168 (60.12%), Query Frame = 1


Query: 10  FGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 69
           FGDT LTKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 70  ARRACANPNPMIDGRRANCNIAAM-GRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPP 129
           A RAC +  P+I+GRRANCN+A++ GR R SP         +P QG              
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTM------TSPQQG-------------- 130

Query: 130 PLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPYFYGY 177
           P N     PP    +S + YP+    +   QH Q + Q V    FYGY
Sbjct: 131 PKNGNRATPPHVGNHSQWYYPS---GFTNQQHQQQNHQAV---PFYGY 152

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BLAST of CmaCh09G005630 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

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BLAST of CmaCh09G005630 vs. Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-24
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

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BLAST of CmaCh09G005630 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.1e-24
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

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BLAST of CmaCh09G005630 vs. Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 84/207 (40.58%), Postives = 109/207 (52.66%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T+KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQ----AAPSYSGVP 131
           RAC +PNP+IDGR+AN N+A +G  +P   +     GV     + +Q      P Y   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYI-YP 126

Query: 132 PPLNQPP--LPPPPPVVYSPY-GYPTYTPDYGYHQHYQHHQQPVYNPYFYGYSVQSPRGA 191
           P + QP   +P P P + SPY  Y   T      Q Y H+    Y  Y Y  S  +    
Sbjct: 127 PTIVQPSMVIPTPIPSLQSPYIDYNAAT------QAYTHYTTAAYEQYPYAASPATGYMG 186

Query: 192 FPIPSQSHQP---RVAVPP--YVYYPP 207
           +   S   QP       PP  Y+ Y P
Sbjct: 187 YGYTSPVQQPLSTTTGAPPTAYIQYQP 205

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BLAST of CmaCh09G005630 vs. TrEMBL
Match: A0A0A0LGV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.1e-100
Identity = 206/274 (75.18%), Postives = 220/274 (80.29%), Query Frame = 1


Query: 3   YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN------ 182
           PSY GVP PLNQPP+PPP    PPVVYSPYGYP Y+PDYGYH    HH Q VYN      
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAVYNPQVQQP 183

Query: 183 ------PYFYGYSVQSPRGAFPIPSQSHQ-PRVAVPP-YVYYPPPAAAAQYE-GSFSYPP 242
                 PY+YGYS  S    FP PSQSHQ PR+ +PP YVYYPPP    Q+E  SF+YPP
Sbjct: 184 QMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPP 243

Query: 243 -PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSE 255
            P P +IRHRF+STDSQTSQQTPTEAEA  VTS+
Sbjct: 244 QPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 271

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BLAST of CmaCh09G005630 vs. TrEMBL
Match: A0A067GMP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039503mg PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.8e-81
Identity = 179/267 (67.04%), Postives = 196/267 (73.41%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFGDILEAVII+DKNT KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC NPNP+IDGRRANCNIA++GRPRPSPPRGR QGG  PY       A
Sbjct: 61  FVTFRDPESARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYH-QQQGGA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQ------PVYNPYFY 180
           PSY GV   L  PP PPPP V+Y P+GYPTYTPDYGYHQ   +HQ       P+ +PY+Y
Sbjct: 121 PSYGGVAASLPPPP-PPPPSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 180

Query: 181 GYSVQSPRGAFPIP-SQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIRHRFA- 240
           GYS+QSPRGA+  P +Q   P  A P Y+YYP      Q EG F  PPP   L R  F  
Sbjct: 181 GYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP-----TQAEGIFP-PPPTLQLPRQPFPF 240

Query: 241 STDSQTSQQTPTEAE-AEAVTSETSTT 259
           S+DSQT QQT  E E A  VTSE+  T
Sbjct: 241 SSDSQTPQQTSAETEAAREVTSESPNT 259

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BLAST of CmaCh09G005630 vs. TrEMBL
Match: E0CRL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05840 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 8.3e-80
Identity = 183/285 (64.21%), Postives = 204/285 (71.58%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAY HYRS FGDTT TKVFVGGLAWETPTD MRR+FEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 1   MAYQHYRSPFGDTTFTKVFVGGLAWETPTDVMRRHFEQFGEILEAVIITDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+IDGRRANCNIA++GRPRPSPPRGR QGG NPY     Q A
Sbjct: 61  FVTFRDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-NPYHAGASQGA 120

Query: 121 PSYSGV-----PPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHH---QQPVY--- 180
            S+SGV     PPP   PP PPPPPV+Y PYGY TYTPDYGYHQ   ++   QQP Y   
Sbjct: 121 SSFSGVPAPLAPPPPPPPPPPPPPPVIYPPYGYATYTPDYGYHQQSLYNPQLQQPYYHQL 180

Query: 181 ---------NPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSF-SY 240
                    +PY+YGYS+Q+ RG F  P Q+H  RV  P Y+YYP      Q EGSF +Y
Sbjct: 181 YGASSSTVASPYYYGYSLQASRGTFSGP-QAH--RVQGPSYLYYP-----TQMEGSFPTY 240

Query: 241 PPPP-PPLI----RHRF-ASTDSQTSQQTPTEAEAEAVTSETSTT 259
           PPPP PP +    R  F +STDSQT QQ+ TE EA    SE+ TT
Sbjct: 241 PPPPVPPTLQPTSRPPFPSSTDSQTVQQSSTETEAGVSHSESPTT 276

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BLAST of CmaCh09G005630 vs. TrEMBL
Match: A0A0D2TUH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 7.0e-79
Identity = 170/275 (61.82%), Postives = 197/275 (71.64%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTT TKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIITDKNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+I GRRANCNIA++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQ----------HYQHH-----Q 180
           PSYSGV   +  PP PP PPV+Y PYG+PTY+P+YGYHQ           Y H       
Sbjct: 121 PSYSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPEYGYHQAVYNPQIQQAQYYHQLYGSSS 180

Query: 181 QPVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFS-YPPPPP 240
             + +PY++GYS+Q+PRG F  P      R+  P Y+YYP     +Q EGSFS YPPPP 
Sbjct: 181 TSMGSPYYFGYSLQAPRGTFSAPQAQ---RIPGPSYLYYP-----SQMEGSFSTYPPPPF 240

Query: 241 PLIRHRFAS-TDSQTSQQTPTEAEAEAVTSETSTT 259
              RH   S  DSQT Q T TE+E+ A+TSE+  T
Sbjct: 241 HPTRHPIPSPADSQTPQPTSTESESGAITSESPKT 266

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BLAST of CmaCh09G005630 vs. TrEMBL
Match: A0A0B0NQL3_GOSAR (RNA-binding 38 OS=Gossypium arboreum GN=F383_08143 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 7.0e-79
Identity = 170/275 (61.82%), Postives = 197/275 (71.64%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTT TKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIIT+KNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITEKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+I GRRANCNIA++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQ----------HYQHH-----Q 180
           PSYSGV   +  PP PP PPV+Y PYG+PTY+P+YGYHQ           Y H       
Sbjct: 121 PSYSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPEYGYHQALYNPQIQQAQYYHQLYGSSS 180

Query: 181 QPVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFS-YPPPPP 240
             + +PY++GYS+Q+PRG F  P      R+  P Y+YYP     +Q EGSFS YPPPP 
Sbjct: 181 TSMGSPYYFGYSLQAPRGTFSAPQAQ---RIPGPSYLYYP-----SQMEGSFSTYPPPPF 240

Query: 241 PLIRHRFAS-TDSQTSQQTPTEAEAEAVTSETSTT 259
              RH F S  DSQT Q T TE+E  A+TSE+  T
Sbjct: 241 HPTRHPFPSPADSQTPQPTSTESEPGAITSESPKT 266

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BLAST of CmaCh09G005630 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 211.8 bits (538), Expect = 4.8e-55
Identity = 142/291 (48.80%), Postives = 173/291 (59.45%), Query Frame = 1


Query: 5   HYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 125 SGVPPPLNQPPLPPPPPVVYSPYGYPTYTPD-YGYHQ----------HYQHHQQPVY--- 184
           +G+  PL   P    P ++Y  YGY TY PD +GYHQ           Y   QQ +Y   
Sbjct: 126 TGMAAPL---PPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGG 185

Query: 185 -------------NPYFYGYSVQSPRGAFP---------IPSQSHQPRVAVPPYVYYPPP 244
                        +PY+YGYS+Q+PR  +           P Q H  R + P ++ YP  
Sbjct: 186 ATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYPSN 245

Query: 245 AAAAQYEGSFSYPPPPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSETSTT 259
           ++ A            PPL     +ST+S+   Q    AE EA T+    T
Sbjct: 246 SSFA------------PPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEIT 277

[Close]

BLAST of CmaCh09G005630 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 192.6 bits (488), Expect = 3.0e-49
Identity = 125/246 (50.81%), Postives = 149/246 (60.57%), Query Frame = 1


Query: 5   HYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPTDEMRRYF+QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGG-VNPYQGSTMQAAPSY 124
           RD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQGG  + YQG       SY
Sbjct: 66  RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG---GQSSY 125

Query: 125 SGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQ---HYQHHQQPVYNPYFYGYSVQS 184
           +G+  P+ Q        ++Y  YGY TY  +YGYHQ   + Q  Q   Y    YG     
Sbjct: 126 TGMAAPVQQ---AAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYG----- 185

Query: 185 PRGAFPIPSQSHQPRVAVPPYVYY--PPPAAAAQYEGSFSYPPPPPPLIRHRFASTDSQT 244
             G    PS S+   +   PY Y   P P     ++  + Y         H       Q 
Sbjct: 186 -GGGATSPSSSN---IMPSPYYYLQAPSPRPYLHHQQHYQY---------HHHQQQQQQQ 226

[Close]

BLAST of CmaCh09G005630 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-38
Identity = 95/176 (53.98%), Postives = 116/176 (65.91%), Query Frame = 1


Query: 5   HY-RSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTT TKVFVGGLAWET ++ +R++FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPP-------RGRGQGGVNPYQGST 124
           FRD E+ARRACA+P P+IDGRRANCN+A++GRPRP  P        GR +   +PY G+ 
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLR-PASPYIGNV 131

Query: 125 MQAAPSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPY 173
                S  G  P     P      VVY PYG   Y P+Y Y Q      Q +Y+PY
Sbjct: 132 QGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYSQ-----SQGLYSPY 180

[Close]

BLAST of CmaCh09G005630 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-35
Identity = 82/149 (55.03%), Postives = 104/149 (69.80%), Query Frame = 1


Query: 11  GDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESA 70
           GDTT TKVFVGGLAWET  + M+++FEQFG+ILEAV+ITDK + +SKGYGFVTFR+AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  RRACANPNPMIDGRRANCNIAAMG--RPRPSPPRGRGQGGVNPYQ--GSTMQAAPSYSGV 130
           R AC +  P+IDGRRANCN+A++G  R +PS P   G G +N  +   STMQ      G 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTG---FGP 127

Query: 131 PPPLNQPPLPPPPPVVYSPYGYPTYTPDY 156
           PPP   P     P +  + +GY  Y+PDY
Sbjct: 128 PPPPQPPTFTHYPHLPLNLFGYSPYSPDY 153

[Close]

BLAST of CmaCh09G005630 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-35
Identity = 110/271 (40.59%), Postives = 142/271 (52.40%), Query Frame = 1


Query: 5   HY-RSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTT TKVFVGGLAWET ++ +RR+F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPMIDGRRANCNIAAMGRPRP---------SPPRGRGQGGVNPYQG 124
           FRD E+ARRAC +P P+IDGRRANCN+A++GR RP         +P R R     +PY G
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPP---SPYVG 131

Query: 125 STMQAAPSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPYFY 184
           S       + G   P +QPP       V  PYG   Y PDY Y Q      Q  Y PY  
Sbjct: 132 SVQSPRGLHFG-SHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQ-----SQGFYGPYMG 191

Query: 185 GYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYP---------PPPPP 244
              +Q     + +P   + P        +  P A        +S+P           P  
Sbjct: 192 QQYLQ----VYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMS 251

Query: 245 LIRHRFASTDSQTSQQTPTEAEAEAVTSETS 257
            I+  + S  + T Q+   +   + + S  S
Sbjct: 252 AIQSPYPSPSAPTHQRVIVQTPPQYIQSSGS 269

[Close]

BLAST of CmaCh09G005630 vs. NCBI nr
Match: gi|449437302|ref|XP_004136431.1| (PREDICTED: RNA-binding protein 38 [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 1.6e-100
Identity = 206/274 (75.18%), Postives = 220/274 (80.29%), Query Frame = 1


Query: 3   YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN------ 182
           PSY GVP PLNQPP+PPP    PPVVYSPYGYP Y+PDYGYH    HH Q VYN      
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAVYNPQVQQP 183

Query: 183 ------PYFYGYSVQSPRGAFPIPSQSHQ-PRVAVPP-YVYYPPPAAAAQYE-GSFSYPP 242
                 PY+YGYS  S    FP PSQSHQ PR+ +PP YVYYPPP    Q+E  SF+YPP
Sbjct: 184 QMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPP 243

Query: 243 -PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSE 255
            P P +IRHRF+STDSQTSQQTPTEAEA  VTS+
Sbjct: 244 QPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 271

[Close]

BLAST of CmaCh09G005630 vs. NCBI nr
Match: gi|1009169788|ref|XP_015865854.1| (PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba])

HSP 1 Score: 311.6 bits (797), Expect = 1.3e-81
Identity = 178/279 (63.80%), Postives = 201/279 (72.04%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 33  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYG 92

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR QGG +PYQG T   A
Sbjct: 93  FVTFRDPESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPYQGGTPHVA 152

Query: 121 -PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYH--------QHYQHHQQ----- 180
            P+YSGVP PL   P PPPPPV+Y PYGYPTYTPDYGYH        QH Q++ Q     
Sbjct: 153 PPAYSGVPTPL---PPPPPPPVIYQPYGYPTYTPDYGYHQALYNPQMQHSQYYHQLYGTS 212

Query: 181 --PVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGS--FSYPPP 240
              +  PY+YGYSVQ+PRG F  P Q+   R+  P Y+YYP      Q EG+   +YPPP
Sbjct: 213 SSTMPTPYYYGYSVQAPRGTFSTPQQAAH-RMPGPSYLYYP-----TQMEGTSFTTYPPP 272

Query: 241 PPPLIRHRF---ASTDSQTSQQTPTEAEAEAVTSETSTT 259
            P    H      +TDSQT + +  E E    TSE+  T
Sbjct: 273 HPTTRLHSLIPSPNTDSQTQRHSSAETEGGVFTSESPNT 301

[Close]

BLAST of CmaCh09G005630 vs. NCBI nr
Match: gi|641862316|gb|KDO81003.1| (hypothetical protein CISIN_1g039503mg [Citrus sinensis])

HSP 1 Score: 308.9 bits (790), Expect = 8.3e-81
Identity = 179/267 (67.04%), Postives = 196/267 (73.41%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFGDILEAVII+DKNT KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC NPNP+IDGRRANCNIA++GRPRPSPPRGR QGG  PY       A
Sbjct: 61  FVTFRDPESARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYH-QQQGGA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQ------PVYNPYFY 180
           PSY GV   L  PP PPPP V+Y P+GYPTYTPDYGYHQ   +HQ       P+ +PY+Y
Sbjct: 121 PSYGGVAASLPPPP-PPPPSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 180

Query: 181 GYSVQSPRGAFPIP-SQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIRHRFA- 240
           GYS+QSPRGA+  P +Q   P  A P Y+YYP      Q EG F  PPP   L R  F  
Sbjct: 181 GYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP-----TQAEGIFP-PPPTLQLPRQPFPF 240

Query: 241 STDSQTSQQTPTEAE-AEAVTSETSTT 259
           S+DSQT QQT  E E A  VTSE+  T
Sbjct: 241 SSDSQTPQQTSAETEAAREVTSESPNT 259

[Close]

BLAST of CmaCh09G005630 vs. NCBI nr
Match: gi|1009130262|ref|XP_015882201.1| (PREDICTED: RNA-binding protein 38-like, partial [Ziziphus jujuba])

HSP 1 Score: 308.1 bits (788), Expect = 1.4e-80
Identity = 172/263 (65.40%), Postives = 194/263 (73.76%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 33  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYG 92

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR QGG +PYQG T   A
Sbjct: 93  FVTFRDPESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPYQGGTPHGA 152

Query: 121 -PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYH--------QHYQHHQQ----- 180
            P+YSGVP PL   P PPPPPV+Y PYGYPTYTPDYGYH        QH Q++ Q     
Sbjct: 153 PPAYSGVPTPL---PPPPPPPVIYQPYGYPTYTPDYGYHQALYNPQMQHSQYYHQLYGTS 212

Query: 181 --PVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGS--FSYPPP 240
              +  PY+YGYSVQ+PRG F  P Q+   R+  P Y+YYP      Q EG+   +YPPP
Sbjct: 213 SSTMPTPYYYGYSVQAPRGTFSTPQQAAH-RMPGPSYLYYP-----TQMEGTSFTTYPPP 272

Query: 241 PPPLIRHRF---ASTDSQTSQQT 243
            P    H      +TDSQT + +
Sbjct: 273 HPTTRLHSLIPSPNTDSQTQRHS 285

[Close]

BLAST of CmaCh09G005630 vs. NCBI nr
Match: gi|470129496|ref|XP_004300653.1| (PREDICTED: RNA-binding protein 24 [Fragaria vesca subsp. vesca])

HSP 1 Score: 305.4 bits (781), Expect = 9.1e-80
Identity = 179/289 (61.94%), Postives = 203/289 (70.24%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MA+PHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVII DKNT KSKGYG
Sbjct: 27  MAHPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIIADKNTGKSKGYG 86

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR Q G +PYQG+  QAA
Sbjct: 87  FVTFRDAESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRNQ-GTSPYQGNAPQAA 146

Query: 121 PSYSGVPPPLNQPPLP---PPPPVVYSPYGYPTYTPDYGYH-------QHYQHHQQPVY- 180
           PSY GVPPP   PPLP      P++Y  Y YPTY+PDYGYH       Q   HHQQP Y 
Sbjct: 147 PSYGGVPPPPPPPPLPQAAAAAPIIYPSYSYPTYSPDYGYHQQATMYNQQVVHHQQPQYY 206

Query: 181 --------------NPYFY--GYSVQSPRGAF-PIPSQSHQPRVAVPPYVYYPPPAAAAQ 240
                          PY+Y  GYS QSPRG+F P+P Q+H+   A   YVYYP      Q
Sbjct: 207 QQQLYGASSPSTMGAPYYYHQGYSFQSPRGSFSPVPPQAHR-MPAAASYVYYP----TQQ 266

Query: 241 YEGSF-SYPPP---PPPLIRH--RFASTDSQTSQQTPTEAEAEAVTSET 256
            + SF SYPPP   PPP +R     + +DSQ  Q   TE+E  A TS++
Sbjct: 267 MDASFSSYPPPILQPPPTLRRPPLTSPSDSQNPQHASTESEPGAATSDS 309

The following BLAST results are available for this feature:

BLAST of CmaCh09G005630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARP1_ARATH	4.9e-25	47.02	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]
RB24B_XENLA	1.4e-24	59.34	RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1	[more]
RBM24_MOUSE	2.4e-24	59.34	RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1	[more]
RBM24_HUMAN	7.1e-24	58.24	RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1	[more]
RBM38_XENLA	1.3e-22	40.58	RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2	[more]

BLAST of CmaCh09G005630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGV2_CUCSA	1.1e-100	75.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1	[more]
A0A067GMP3_CITSI	5.8e-81	67.04	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039503mg PE=4 SV=1	[more]
E0CRL7_VITVI	8.3e-80	64.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05840 PE=4 SV=...	[more]
A0A0D2TUH0_GOSRA	7.0e-79	61.82	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1	[more]
A0A0B0NQL3_GOSAR	7.0e-79	61.82	RNA-binding 38 OS=Gossypium arboreum GN=F383_08143 PE=4 SV=1	[more]

BLAST of CmaCh09G005630 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78260.1	4.8e-55	48.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.0e-49	50.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.4e-38	53.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.9e-35	55.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	4.3e-35	40.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmaCh09G005630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437302\|ref\|XP_004136431.1\|	1.6e-100	75.18	PREDICTED: RNA-binding protein 38 [Cucumis sativus]	[more]
gi\|1009169788\|ref\|XP_015865854.1\|	1.3e-81	63.80	PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba]	[more]
gi\|641862316\|gb\|KDO81003.1\|	8.3e-81	67.04	hypothetical protein CISIN_1g039503mg [Citrus sinensis]	[more]
gi\|1009130262\|ref\|XP_015882201.1\|	1.4e-80	65.40	PREDICTED: RNA-binding protein 38-like, partial [Ziziphus jujuba]	[more]
gi\|470129496\|ref\|XP_004300653.1\|	9.1e-80	61.94	PREDICTED: RNA-binding protein 24 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G005630.1	CmaCh09G005630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..76 score: 6.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 score: 1.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 16..93 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 12..108 score: 1.5
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 10..115 score: 5.24
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 128..206 score: 1.0E-41coord: 12..98 score: 1.0
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 12..98 score: 1.0E-41coord: 128..206 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh09G005630	Cucsa.160090	Cucumber (Gy14) v1	cgycmaB0443
CmaCh09G005630	Cucsa.311530	Cucumber (Gy14) v1	cgycmaB0854
CmaCh09G005630	Cla023017	Watermelon (97103) v1	cmawmB036
CmaCh09G005630	Cla022101	Watermelon (97103) v1	cmawmB020
CmaCh09G005630	Csa3G889750	Cucumber (Chinese Long) v2	cmacuB014
CmaCh09G005630	MELO3C011032	Melon (DHL92) v3.5.1	cmameB030
CmaCh09G005630	ClCG08G011170	Watermelon (Charleston Gray)	cmawcgB033
CmaCh09G005630	ClCG11G014170	Watermelon (Charleston Gray)	cmawcgB014
CmaCh09G005630	CSPI02G21080	Wild cucumber (PI 183967)	cmacpiB010
CmaCh09G005630	CSPI03G45130	Wild cucumber (PI 183967)	cmacpiB014
CmaCh09G005630	CmoCh01G016570	Cucurbita moschata (Rifu)	cmacmoB040
CmaCh09G005630	CmoCh09G005520	Cucurbita moschata (Rifu)	cmacmoB027
CmaCh09G005630	CmoCh05G005290	Cucurbita moschata (Rifu)	cmacmoB060
CmaCh09G005630	Lsi08G009710	Bottle gourd (USVL1VR-Ls)	cmalsiB037
CmaCh09G005630	Lsi04G022390	Bottle gourd (USVL1VR-Ls)	cmalsiB022
CmaCh09G005630	Cp4.1LG02g05060	Cucurbita pepo (Zucchini)	cmacpeB053
CmaCh09G005630	Cp4.1LG06g04390	Cucurbita pepo (Zucchini)	cmacpeB060
CmaCh09G005630	MELO3C011033.2	Melon (DHL92) v3.6.1	cmamedB030
CmaCh09G005630	MELO3C003568.2	Melon (DHL92) v3.6.1	cmamedB033
CmaCh09G005630	CsaV3_3G047560	Cucumber (Chinese Long) v3	cmacucB0021
CmaCh09G005630	CsaV3_2G029740	Cucumber (Chinese Long) v3	cmacucB0013
CmaCh09G005630	Cla97C11G220150	Watermelon (97103) v2	cmawmbB019
CmaCh09G005630	Cla97C08G154140	Watermelon (97103) v2	cmawmbB039
CmaCh09G005630	Bhi09G002069	Wax gourd	cmawgoB0026
CmaCh09G005630	CsGy3G042620	Cucumber (Gy14) v2	cgybcmaB285
CmaCh09G005630	CsGy2G020800	Cucumber (Gy14) v2	cgybcmaB145
CmaCh09G005630	Carg25633	Silver-seed gourd	carcmaB1400
CmaCh09G005630	Carg02975	Silver-seed gourd	carcmaB0889
CmaCh09G005630	Carg08193	Silver-seed gourd	carcmaB0071

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh09G005630	CmaCh12G001620	Cucurbita maxima (Rimu)	cmacmaB035
CmaCh09G005630	CmaCh01G016110	Cucurbita maxima (Rimu)	cmacmaB044

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh09G005630	Melon (DHL92) v3.5.1	cmameB034
CmaCh09G005630	Cucurbita pepo (Zucchini)	cmacpeB029