Cp4.1LG06g04390 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g04390
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding protein 24
Location	Cp4.1LG06 : 2446811 .. 2449337 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACATGTATAATTAAATTTAACTGTTAATATCTGATTCCGAAAGAATTTTATTGCCTTAACGTTCGACTCTTGTTAGTAATATTTGCACAGGTACTATACTACTCGATTCGAGATACTTCAAACCCTAAATTACAACTTTAACGGGGCGGGAGACGAGATTTGATTACACACGCTCGTTGAGGAATGATTCTTTTTTAAACCTACGAAAGGATGCTTCTCTGCTTTTTATAAGAGAGCACGTGCCAGAGTTTCATTACCAACCCTGTTAATTCGTACCCAAACACAAACCCAGTCCCATAAATATGAGTAAGCTAGTTCGAGAAGGCTTGTATTAAGTTAGAAACAGTAACATCTCAAGTATATTGTTGGCAGATATTGTTCAATTTAGTCGGTTACATATTGTTATCAAGTCTCACAAATTTAAAATACGTTTGTTCCAAAGTGTCTGTAAATTAAAAAATTTAAAAGAATAAAAATCTTAATTTTTTTTTTTATTGGGGATTTTAATGGTAAGACAGAGAAGCAATTGTCTCACTCACCTGTCATCTTCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTCTCTCCTTTCTCTCAACCTATCAAAATTATAACAGCCATCACCAACGGCTTCAACCCCCTGCCAGTGGCATCATTTTTCTTAGCTACTTTCTTCTTCTTCATCCAATCCAACCCCAAAACTGCTGCTCGGTCGAAGAACGTATTCAAACCCGAGAGCTTTTTAGAGCCTCTCGATACATATCTATATCTATATCTATATCTATATTTCATGCAGAAGAAGCTTCGTGTTATCGACCATGTCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCTAAAGGATACGGCTTTGTAAGTTAGCCTCGTAATTATTTAAGTTTTTGAGTTTCGGGGTGATTTATATCATTATTCAGGTAACGTTTCGAGACGCTGAATCTGCGAGAAGAGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCGCCTCCACGAGGTCGGTATTTTAGTTTATCTCTATCGTTTTTACCACGATTGTTGTTTATTCAAATTTTTGTTTTGGTATTCAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCTGCCCCCTGTCGTTTATTCACCATACGGGTCAGTCAAGTTATTCTCGAATTAGAAAGTTGGGTAGAAATCGTAAAGATTAAATTGAAATCAAGGATTAAACTAAATCAAATATGCGATTATTGATTAGATAAACAAAAGATTAAACGGGTTTAGAAATTGGGTATGAACAGAAATATATGGACCCACTGTTTGCTTGTCTTTGAAGTGTCAACCTCTGCATATCTCTATGATAGTATGATATTGTTCACTTAAAAAAAAACGCTCGAAATATACTCAATTATAAGTTACTTATCGCTCGATTTTCTACGTGGGTCTAGATTGATCTACGGTTTCATTTGGAAAGAAAGAAAGGGTGGTCACAATGGGTCAAAACCATTTATGTGATATCCCACAACGAAAGAAATCTGTCACTAGCAGACGTGTTTTAAAAACCTTTTTAAAGGGTGTGAAAATATATGGTAACGGTGGGCTTAGGCAGCGAGGTCAGCCCCACCGACCAATGGACAAACCCAAAACCAATACAACTGTAACACCAATCAATGTGTTTACAACTGTCCCAAAAACAAAACTGAGTCCCATTTGAGCTAAGGTTCTTCATAAAAAGAATAGAGATTTTCCACTAAGCAATTAATTCCCACCCCAACCCACTTGGTTCTTTTTTCTTGGCTTTGCAGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCGTCAAAAGTCACCATAAACCCTAACTAACTTATAAAAAGCATTGAATTTTAGCAACCACTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCGCAGTCGCATCAGCCCCGTGTACCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAA

mRNA sequence

ATGGTACATACAGAGAAGCAATTGTCTCACTCACCTGTCATCTTCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAAAGAAGCTTCGTGTTATCGACCATGTCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCTAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGAGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCGCCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCTGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCGTCAAAACAACCACTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCGCAGTCGCATCAGCCCCGTGTACCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAA

Coding sequence (CDS)

ATGGTACATACAGAGAAGCAATTGTCTCACTCACCTGTCATCTTCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAAAGAAGCTTCGTGTTATCGACCATGTCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCTAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGAGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCGCCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCTGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCGTCAAAACAACCACTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCGCAGTCGCATCAGCCCCGTGTACCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAA

Protein sequence

MVHTEKQLSHSPVIFYYITHQPTSSTSPSSKLERSFVLSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAAAAAAAAAQFEGSFSYPPPPPLIRHRFASTGTNFYLFL

Homology

[Close]

BLAST of Cp4.1LG06g04390 vs. Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-25
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 112 RACANPNPMIDGRRANCNIAAMG-RPR 138
           RAC +PNP+IDGR+AN N+A +G +PR
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPR 93

[Close]

BLAST of Cp4.1LG06g04390 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-24
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTT+TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 112 RACANPNPMIDGRRANCNIAAMG-RPRPSPP 142
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Cp4.1LG06g04390 vs. Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-24
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTT+TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 112 RACANPNPMIDGRRANCNIAAMG-RPRPSPP 142
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Cp4.1LG06g04390 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-24
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1


Query: 52  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 111
           DTT+TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 112 RACANPNPMIDGRRANCNIAAMG-RPRPSPP 142
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Cp4.1LG06g04390 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-24
Identity = 94/266 (35.34%), Postives = 128/266 (48.12%), Query Frame = 1


Query: 50  FGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 109
           FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 110 ARRACANPNPMIDGRRANCNIAAM-GRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPP 169
           A RAC +  P+I+GRRANCN+A++ GR R SP     Q G  P  G+  +A P + G   
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQG--PKNGN--RATPPHVG--- 130

Query: 170 PLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPF------------LLKL 229
                         +S + YP+     G+ +Q +Q       PF                
Sbjct: 131 -------------NHSQWYYPS-----GFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQ 190

Query: 230 CIIFHCGIYSNTWRACASKQPLYNP---YFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVY 289
            + +  G Y N + A    QP   P   Y++ +     R    + S        VP Y  
Sbjct: 191 KVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPM------VPFYTV 245

Query: 290 YPPPAAAAAAAAAAQFEGSFSYPPPP 300
           YP   + A       F    S+  PP
Sbjct: 251 YPYHQSQAIGFPQPSFSKPLSFSTPP 245

[Close]

BLAST of Cp4.1LG06g04390 vs. TrEMBL
Match: A0A0A0LGV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.2e-90
Identity = 191/281 (67.97%), Postives = 207/281 (73.67%), Query Frame = 1


Query: 42  SYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF 101
           +YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGF
Sbjct: 3   NYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGF 62

Query: 102 VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QA 161
           VTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA
Sbjct: 63  VTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQA 122

Query: 162 APSYSGVPPPLNQPPL----PPLPPVVYSPYGYPTYTPDYGYHHQH--YQHHQVSQPPFL 221
            PSY GVP PLNQPP+    PP PPVVYSPYGYP Y+PDYGYHH H    + QV QP   
Sbjct: 123 TPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ-- 182

Query: 222 LKLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQ-PRVPVPP-Y 281
                     +Y  T            PY+YGYS  S    FP+PSQSHQ PR+ +PP Y
Sbjct: 183 ----------MYQQT------------PYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSY 242

Query: 282 VYYPPPAAAAAAAAAAQFE-GSFSYP--PPPPLIRHRFAST 310
           VYYPPP          QFE  SF+YP  P P +IRHRF+ST
Sbjct: 243 VYYPPP------PPPPQFEPSSFNYPPQPQPQIIRHRFSST 251

[Close]

BLAST of Cp4.1LG06g04390 vs. TrEMBL
Match: W9R7P9_9ROSA (RNA-binding protein 24 OS=Morus notabilis GN=L484_012724 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.7e-79
Identity = 178/276 (64.49%), Postives = 193/276 (69.93%), Query Frame = 1


Query: 42  SYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF 101
           +YPHYRSQFGDTTFTKVFVGGLAWETPTDEMR YFEQFGDILEAVIITDKNT KSKGYGF
Sbjct: 3   NYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRSYFEQFGDILEAVIITDKNTGKSKGYGF 62

Query: 102 VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQ--A 161
           VTFRD ESARRACANPNP+IDGRRANCNIA++GRPRPSPPRGR QGG +P+QG + Q  A
Sbjct: 63  VTFRDPESARRACANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPFQGGSPQGHA 122

Query: 162 APSYSG-VPPPLNQPPLPPLPPVVYSPYGYPTYTP-DYGYHHQHYQHHQVSQPPFLLKLC 221
            PSYSG VP PL  PP PP PPV+Y PY YPTYTP DYGYH   Y + QV QP       
Sbjct: 123 VPSYSGSVPAPLPPPP-PPPPPVIYQPYAYPTYTPADYGYHQAMY-NPQVQQP------- 182

Query: 222 IIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPP 281
                  Y +     AS   +  PY+YGYSLQSPRG F +  Q  +   P P Y+YYP P
Sbjct: 183 -----AQYYHQLYGTASSSTMNTPYYYGYSLQSPRGPFSTVPQPQRIAGP-PSYLYYPNP 242

Query: 282 AAAAAAAAAAQFEGSF-SYPPPPPLIRHRFAS-TGT 312
                       EGSF SYP  P   RH F S TGT
Sbjct: 243 --------PHHLEGSFSSYPFQPTTTRHPFPSPTGT 254

[Close]

BLAST of Cp4.1LG06g04390 vs. TrEMBL
Match: M5Y6A5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019392mg PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 8.6e-79
Identity = 166/266 (62.41%), Postives = 185/266 (69.55%), Query Frame = 1


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYF+QFG+ILEAVII DKNT KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFQQFGEILEAVIIADKNTGKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRD+ESARRACANPNP+IDGRRANCNIA++GRPRPSPPRGR Q    PYQGS  QAA
Sbjct: 61  FVTFRDSESARRACANPNPVIDGRRANCNIASLGRPRPSPPRGRNQAS-GPYQGSAPQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTP-DYGYHHQHYQHHQVSQPPFLLKLCII 220
            SY G PP    PPLPP  P++Y PY YPTYTP DYGYH   Y      QP +       
Sbjct: 121 QSYGGAPP--LPPPLPPPAPIIYPPYSYPTYTPADYGYHQAMYNQQVQQQPQY------- 180

Query: 221 FHCGIYSNTWRACASKQPLYNPYFY-GYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPA 280
                YS+     +   P+  PY+Y GYS QSPR  F SP  +H  R+P P Y+YYP   
Sbjct: 181 -----YSHQVYGSSPSSPMGTPYYYHGYSFQSPRATFSSP-PAH--RMPAPSYLYYP--- 237

Query: 281 AAAAAAAAAQFEGSFSYP-PPPPLIR 304
                    Q E S SYP P PPL++
Sbjct: 241 --------TQMEPSSSYPNPAPPLLQ 237

[Close]

BLAST of Cp4.1LG06g04390 vs. TrEMBL
Match: A0A0B0NQL3_GOSAR (RNA-binding 38 OS=Gossypium arboreum GN=F383_08143 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.1e-78
Identity = 161/270 (59.63%), Postives = 191/270 (70.74%), Query Frame = 1


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRS FGDTTFTKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIIT+KNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITEKNTGKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRD ESARRAC +PNP+I GRRANCNIA++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 161 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIF 220
           PSYSGV   +  PP PPLPPV+Y PYG+PTY+P+YGYH   Y + Q+ Q  +  +L    
Sbjct: 121 PSYSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPEYGYHQALY-NPQIQQAQYYHQL---- 180

Query: 221 HCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA 280
               Y       +S   + +PY++GYSLQ+PRG F +P      R+P P Y+YYP     
Sbjct: 181 ----YG------SSSTSMGSPYYFGYSLQAPRGTFSAPQAQ---RIPGPSYLYYP----- 240

Query: 281 AAAAAAAQFEGSFSYPPPPPL--IRHRFAS 309
                 +Q EGSFS  PPPP    RH F S
Sbjct: 241 ------SQMEGSFSTYPPPPFHPTRHPFPS 240

[Close]

BLAST of Cp4.1LG06g04390 vs. TrEMBL
Match: A0A0D2TUH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.5e-78
Identity = 158/260 (60.77%), Postives = 187/260 (71.92%), Query Frame = 1


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRS FGDTTFTKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIITDKNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITDKNTGKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRD ESARRAC +PNP+I GRRANCNIA++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 161 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIF 220
           PSYSGV   +  PP PPLPPV+Y PYG+PTY+P+YGYH   Y + Q+ Q  +  +L    
Sbjct: 121 PSYSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPEYGYHQAVY-NPQIQQAQYYHQL---- 180

Query: 221 HCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPAAA 280
               Y       +S   + +PY++GYSLQ+PRG F +P      R+P P Y+YYP     
Sbjct: 181 ----YG------SSSTSMGSPYYFGYSLQAPRGTFSAPQAQ---RIPGPSYLYYP----- 230

Query: 281 AAAAAAAQFEGSFSYPPPPP 301
                 +Q EGSFS  PPPP
Sbjct: 241 ------SQMEGSFSTYPPPP 230

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 219.5 bits (558), Expect = 2.9e-57
Identity = 130/247 (52.63%), Postives = 165/247 (66.80%), Query Frame = 1


Query: 45  HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 104
           +YRS FGDTT+TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 105 RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 164
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 165 SGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIFHCG 224
           +G+  PL   P    P ++Y  YGY TY PD   +HQ   + Q+ Q  +  +   ++  G
Sbjct: 126 TGMAAPL---PPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGG 185

Query: 225 IYSNTWRACASKQPLYNPYFYGYSLQSPRGAFP---------SPSQSHQPRVPVPPYVYY 282
             S +  + A+  P  +PY+YGYSLQ+PR  +          +P Q H  R   P ++ Y
Sbjct: 186 ATSPS-SSGATIMP--SPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVY 242

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 199.1 bits (505), Expect = 4.0e-51
Identity = 124/228 (54.39%), Postives = 148/228 (64.91%), Query Frame = 1


Query: 38  LSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSK 97
           +S  SY  YRS FGDTT TKVFVGGLAWETPTDEMRRYF+QFG+ILEAVIITDK T KSK
Sbjct: 1   MSNTSY--YRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSK 60

Query: 98  GYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGG-VNPYQGST 157
           GYGFVTFRD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQGG  + YQG  
Sbjct: 61  GYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG- 120

Query: 158 MQAAPSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKL 217
                SY+G+  P+ Q     L   +Y  YGY TY  +YGYH   Y + Q+ Q  +    
Sbjct: 121 --GQSSYTGMAAPVQQAAAAQL---MYPSYGY-TYNSEYGYHQALY-NAQLQQAQY---- 180

Query: 218 CIIFHCGIYSNTWRACASKQPLY-NPYFYGYSLQSPRGAFPSPSQSHQ 264
              +   +Y        S   +  +PY+Y   LQ+P    P P   HQ
Sbjct: 181 ---YQQQMYGGGGATSPSSSNIMPSPYYY---LQAPS---PRPYLHHQ 205

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.7e-39
Identity = 92/164 (56.10%), Postives = 110/164 (67.07%), Query Frame = 1


Query: 45  HY-RSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 104
           HY  S FGDTTFTKVFVGGLAWET ++ +R++FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 105 FRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSY 164
           FRD E+ARRACA+P P+IDGRRANCN+A++GRPRP  P       +    G    A+P  
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP----YAVIPNMPGRLRPASPYI 131

Query: 165 SGVPPPL-----NQPPLPPLP-----PVVYSPYGYPTYTPDYGY 198
             V  P      N P   PLP      VVY PYG   Y P+Y Y
Sbjct: 132 GNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMY 170

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 1


Query: 51  GDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESA 110
           GDTT+TKVFVGGLAWET  + M+++FEQFG+ILEAV+ITDK + +SKGYGFVTFR+AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 111 RRACANPNPMIDGRRANCNIAAMG--RPRPSPPRGRGQGGVNPYQ--GSTMQAAPSYSGV 170
           R AC +  P+IDGRRANCN+A++G  R +PS P   G G +N  +   STMQ      G 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTG---FGP 127

Query: 171 PPPLNQPPLPPLPPVVYSPYGYPTYTPDY 196
           PPP   P     P +  + +GY  Y+PDY
Sbjct: 128 PPPPQPPTFTHYPHLPLNLFGYSPYSPDY 153

[Close]

BLAST of Cp4.1LG06g04390 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-36
Identity = 100/223 (44.84%), Postives = 127/223 (56.95%), Query Frame = 1


Query: 45  HY-RSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 104
           HY  S FGDTTFTKVFVGGLAWET ++ +RR+F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 105 FRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSY 164
           FRD E+ARRAC +P P+IDGRRANCN+A++GR RP            P Q + +  AP  
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRP------------PMQYAVIPHAP-- 131

Query: 165 SGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQHHQVSQPPFLLKLCIIFHCG 224
             V PP              SPY     +P  G H   + +HQ   P +  +  +++  G
Sbjct: 132 GRVRPP--------------SPYVGSVQSP-RGLHFGSHPYHQ--PPTYNYQQGVVYPYG 191

Query: 225 I--YSNTWRACASKQPLYNPYFYGYSLQ--SPRGAFPSPSQSH 263
           +  Y   +    S Q  Y PY     LQ     GA  SP   +
Sbjct: 192 VTPYGPDYMYSQS-QGFYGPYMGQQYLQVYGVPGAVNSPGYQY 202

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: gi|449437302|ref|XP_004136431.1| (PREDICTED: RNA-binding protein 38 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 3.1e-90
Identity = 191/281 (67.97%), Postives = 207/281 (73.67%), Query Frame = 1


Query: 42  SYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF 101
           +YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGF
Sbjct: 3   NYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGF 62

Query: 102 VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QA 161
           VTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA
Sbjct: 63  VTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQA 122

Query: 162 APSYSGVPPPLNQPPL----PPLPPVVYSPYGYPTYTPDYGYHHQH--YQHHQVSQPPFL 221
            PSY GVP PLNQPP+    PP PPVVYSPYGYP Y+PDYGYHH H    + QV QP   
Sbjct: 123 TPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ-- 182

Query: 222 LKLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQ-PRVPVPP-Y 281
                     +Y  T            PY+YGYS  S    FP+PSQSHQ PR+ +PP Y
Sbjct: 183 ----------MYQQT------------PYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSY 242

Query: 282 VYYPPPAAAAAAAAAAQFE-GSFSYP--PPPPLIRHRFAST 310
           VYYPPP          QFE  SF+YP  P P +IRHRF+ST
Sbjct: 243 VYYPPP------PPPPQFEPSSFNYPPQPQPQIIRHRFSST 251

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: gi|1009130262|ref|XP_015882201.1| (PREDICTED: RNA-binding protein 38-like, partial [Ziziphus jujuba])

HSP 1 Score: 310.5 bits (794), Expect = 3.5e-81
Identity = 169/281 (60.14%), Postives = 194/281 (69.04%), Query Frame = 1


Query: 26  TSPSSKLERSFVLSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEA 85
           +S  +   +  V   M+YPHYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEA
Sbjct: 18  SSKKTNFNKFDVFEAMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEA 77

Query: 86  VIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRG 145
           VIITDKNT KSKGYGFVTFRD ESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR 
Sbjct: 78  VIITDKNTGKSKGYGFVTFRDPESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRN 137

Query: 146 QGGVNPYQGSTMQAA-PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQH 205
           QGG +PYQG T   A P+YSGVP PL   P PP PPV+Y PYGYPTYTPDYGYH   Y  
Sbjct: 138 QGG-SPYQGGTPHGAPPAYSGVPTPL---PPPPPPPVIYQPYGYPTYTPDYGYHQALYNP 197

Query: 206 HQVSQPPFLLKLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQP 265
                         + H   Y   +   +S  P   PY+YGYS+Q+PRG F +P Q+   
Sbjct: 198 Q-------------MQHSQYYHQLYGTSSSTMP--TPYYYGYSVQAPRGTFSTPQQAAH- 257

Query: 266 RVPVPPYVYYPPPAAAAAAAAAAQFEGS--FSYPPPPPLIR 304
           R+P P Y+YYP            Q EG+   +YPPP P  R
Sbjct: 258 RMPGPSYLYYP-----------TQMEGTSFTTYPPPHPTTR 267

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: gi|1009169788|ref|XP_015865854.1| (PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba])

HSP 1 Score: 310.5 bits (794), Expect = 3.5e-81
Identity = 169/281 (60.14%), Postives = 194/281 (69.04%), Query Frame = 1


Query: 26  TSPSSKLERSFVLSTMSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEA 85
           +S  +   +  V   M+YPHYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEA
Sbjct: 18  SSKKTNFNKFDVFEAMAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEA 77

Query: 86  VIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRG 145
           VIITDKNT KSKGYGFVTFRD ESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR 
Sbjct: 78  VIITDKNTGKSKGYGFVTFRDPESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRN 137

Query: 146 QGGVNPYQGSTMQAA-PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTPDYGYHHQHYQH 205
           QGG +PYQG T   A P+YSGVP PL   P PP PPV+Y PYGYPTYTPDYGYH   Y  
Sbjct: 138 QGG-SPYQGGTPHVAPPAYSGVPTPL---PPPPPPPVIYQPYGYPTYTPDYGYHQALYNP 197

Query: 206 HQVSQPPFLLKLCIIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQP 265
                         + H   Y   +   +S  P   PY+YGYS+Q+PRG F +P Q+   
Sbjct: 198 Q-------------MQHSQYYHQLYGTSSSTMP--TPYYYGYSVQAPRGTFSTPQQAAH- 257

Query: 266 RVPVPPYVYYPPPAAAAAAAAAAQFEGS--FSYPPPPPLIR 304
           R+P P Y+YYP            Q EG+   +YPPP P  R
Sbjct: 258 RMPGPSYLYYP-----------TQMEGTSFTTYPPPHPTTR 267

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: gi|703106893|ref|XP_010098613.1| (RNA-binding protein 24 [Morus notabilis])

HSP 1 Score: 304.3 bits (778), Expect = 2.5e-79
Identity = 178/276 (64.49%), Postives = 193/276 (69.93%), Query Frame = 1


Query: 42  SYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGF 101
           +YPHYRSQFGDTTFTKVFVGGLAWETPTDEMR YFEQFGDILEAVIITDKNT KSKGYGF
Sbjct: 3   NYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRSYFEQFGDILEAVIITDKNTGKSKGYGF 62

Query: 102 VTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQ--A 161
           VTFRD ESARRACANPNP+IDGRRANCNIA++GRPRPSPPRGR QGG +P+QG + Q  A
Sbjct: 63  VTFRDPESARRACANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPFQGGSPQGHA 122

Query: 162 APSYSG-VPPPLNQPPLPPLPPVVYSPYGYPTYTP-DYGYHHQHYQHHQVSQPPFLLKLC 221
            PSYSG VP PL  PP PP PPV+Y PY YPTYTP DYGYH   Y + QV QP       
Sbjct: 123 VPSYSGSVPAPLPPPP-PPPPPVIYQPYAYPTYTPADYGYHQAMY-NPQVQQP------- 182

Query: 222 IIFHCGIYSNTWRACASKQPLYNPYFYGYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPP 281
                  Y +     AS   +  PY+YGYSLQSPRG F +  Q  +   P P Y+YYP P
Sbjct: 183 -----AQYYHQLYGTASSSTMNTPYYYGYSLQSPRGPFSTVPQPQRIAGP-PSYLYYPNP 242

Query: 282 AAAAAAAAAAQFEGSF-SYPPPPPLIRHRFAS-TGT 312
                       EGSF SYP  P   RH F S TGT
Sbjct: 243 --------PHHLEGSFSSYPFQPTTTRHPFPSPTGT 254

[Close]

BLAST of Cp4.1LG06g04390 vs. NCBI nr
Match: gi|645225158|ref|XP_008219453.1| (PREDICTED: RNA-binding protein 24 isoform X1 [Prunus mume])

HSP 1 Score: 302.8 bits (774), Expect = 7.3e-79
Identity = 166/266 (62.41%), Postives = 185/266 (69.55%), Query Frame = 1


Query: 41  MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 100
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYF+QFG+ILEAVII DKNT KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFQQFGEILEAVIIADKNTGKSKGYG 60

Query: 101 FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 160
           FVTFRD+ESARRAC+NPNP+IDGRRANCNIA++GRPRPSPPRGR Q    PYQGS  QAA
Sbjct: 61  FVTFRDSESARRACSNPNPVIDGRRANCNIASLGRPRPSPPRGRNQAS-GPYQGSAPQAA 120

Query: 161 PSYSGVPPPLNQPPLPPLPPVVYSPYGYPTYTP-DYGYHHQHYQHHQVSQPPFLLKLCII 220
            SY G PP    PPLPP  P++Y PY YPTYTP DYGYH Q   + QV Q P        
Sbjct: 121 QSYGGGPP--LPPPLPPSAPIIYPPYSYPTYTPADYGYHQQAMYNPQVQQQP-------- 180

Query: 221 FHCGIYSNTWRACASKQPLYNPYFY-GYSLQSPRGAFPSPSQSHQPRVPVPPYVYYPPPA 280
                YS+     +   P+  PY+Y GYS QSPR  F SP      R+P P Y+YYP   
Sbjct: 181 ---QYYSHQVYGSSPSSPMGTPYYYHGYSFQSPRATFSSPPAQ---RMPAPSYLYYP--- 238

Query: 281 AAAAAAAAAQFEGSFSYP-PPPPLIR 304
                    Q E S SYP P PPL++
Sbjct: 241 --------TQMEPSSSYPNPAPPLLQ 238

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g04390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBM38_CHICK	4.6e-25	62.07	RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1	[more]
RB24A_XENLA	1.0e-24	59.34	RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1	[more]
RBM24_XENTR	1.0e-24	59.34	RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1	[more]
RB24B_XENLA	1.0e-24	59.34	RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1	[more]
ARP1_ARATH	1.8e-24	35.34	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]

BLAST of Cp4.1LG06g04390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGV2_CUCSA	2.2e-90	67.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1	[more]
W9R7P9_9ROSA	1.7e-79	64.49	RNA-binding protein 24 OS=Morus notabilis GN=L484_012724 PE=4 SV=1	[more]
M5Y6A5_PRUPE	8.6e-79	62.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019392mg PE=4 SV=1	[more]
A0A0B0NQL3_GOSAR	1.1e-78	59.63	RNA-binding 38 OS=Gossypium arboreum GN=F383_08143 PE=4 SV=1	[more]
A0A0D2TUH0_GOSRA	2.5e-78	60.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g04390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78260.1	2.9e-57	52.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	4.0e-51	54.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	2.7e-39	56.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.2e-36	55.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.6e-36	44.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG06g04390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437302\|ref\|XP_004136431.1\|	3.1e-90	67.97	PREDICTED: RNA-binding protein 38 [Cucumis sativus]	[more]
gi\|1009130262\|ref\|XP_015882201.1\|	3.5e-81	60.14	PREDICTED: RNA-binding protein 38-like, partial [Ziziphus jujuba]	[more]
gi\|1009169788\|ref\|XP_015865854.1\|	3.5e-81	60.14	PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba]	[more]
gi\|703106893\|ref\|XP_010098613.1\|	2.5e-79	64.49	RNA-binding protein 24 [Morus notabilis]	[more]
gi\|645225158\|ref\|XP_008219453.1\|	7.3e-79	62.41	PREDICTED: RNA-binding protein 24 isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g04390.1	Cp4.1LG06g04390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 58..116 score: 8.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 57..129 score: 1.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 56..133 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 44..148 score: 1.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 43..155 score: 4.39
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 48..138 score: 5.9E-40coord: 168..193 score: 5.9E-40coord: 13..18 score: 5.9
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 168..193 score: 5.9E-40coord: 13..18 score: 5.9E-40coord: 48..138 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g04390	Cucsa.311530	Cucumber (Gy14) v1	cgycpeB0828
Cp4.1LG06g04390	CmaCh09G005630	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g04390	CmaCh01G016110	Cucurbita maxima (Rimu)	cmacpeB502
Cp4.1LG06g04390	CmoCh01G016570	Cucurbita moschata (Rifu)	cmocpeB460
Cp4.1LG06g04390	CmoCh09G005520	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g04390	Cla023017	Watermelon (97103) v1	cpewmB774
Cp4.1LG06g04390	Csa3G889750	Cucumber (Chinese Long) v2	cpecuB776
Cp4.1LG06g04390	ClCG11G014170	Watermelon (Charleston Gray)	cpewcgB693
Cp4.1LG06g04390	CSPI03G45130	Wild cucumber (PI 183967)	cpecpiB778
Cp4.1LG06g04390	Lsi04G022390	Bottle gourd (USVL1VR-Ls)	cpelsiB636
Cp4.1LG06g04390	Lsi08G009710	Bottle gourd (USVL1VR-Ls)	cpelsiB647
Cp4.1LG06g04390	MELO3C003568.2	Melon (DHL92) v3.6.1	cpemedB861
Cp4.1LG06g04390	MELO3C011033.2	Melon (DHL92) v3.6.1	cpemedB857
Cp4.1LG06g04390	CsaV3_2G029740	Cucumber (Chinese Long) v3	cpecucB0955
Cp4.1LG06g04390	CsaV3_3G047560	Cucumber (Chinese Long) v3	cpecucB0964
Cp4.1LG06g04390	Bhi09G002069	Wax gourd	cpewgoB0988
Cp4.1LG06g04390	CsGy3G042620	Cucumber (Gy14) v2	cgybcpeB436
Cp4.1LG06g04390	CsGy2G020800	Cucumber (Gy14) v2	cgybcpeB252
Cp4.1LG06g04390	Carg02975	Silver-seed gourd	carcpeB0906
Cp4.1LG06g04390	Carg25633	Silver-seed gourd	carcpeB1406
Cp4.1LG06g04390	Carg08193	Silver-seed gourd	carcpeB0085

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG06g04390	Cp4.1LG02g05060	Cucurbita pepo (Zucchini)	cpecpeB467

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g04390	Cucurbita pepo (Zucchini)	cpecpeB135
Cp4.1LG06g04390	Cucurbita maxima (Rimu)	cmacpeB786
Cp4.1LG06g04390	Cucurbita moschata (Rifu)	cmocpeB739
Cp4.1LG06g04390	Melon (DHL92) v3.5.1	cpemeB728