Carg02975 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02975
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_008 : 1104133 .. 1107207 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTCGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCCAAAGGATACGGCTTTGTAAGTTAGCCTCGTAATTATTTAAGTTTTTGAGTTTCGTGGTGATTTATATCATTATTCAGGTAACGTTTCGAGACGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCCGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGTCGGTATTATAGTTTTATCTCTATCGTTTTTACCACGATGGTTGTTTATTCAAATTTTTGTTTTGGTATTCAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCGCCCCCTGTCGTTTATTCACCATACGGGTCAGTCAAGTTATTATCGAATTAGAAAGTTGGGTAGAAATCATGAAGGTTAAATTGAAATCAACGATTAAACTAAATCAAATATGCCATTATTGAACCCTGAAACAAAAGATTAAACGGGTTTAGAAATTGGGTTTGAACGGAAACATATGGACCCACTGTTTACTTGTCTAAAGTGTCAACCTCCACATATCTGTATAATAATATGATATTGTTCACTTTAAACAAAAACGCTCACTCAATTATGAGTTATGCATCGCTCGATTTTCTACGTGGGTCTAGATTGATCAGCCGTTTCATTTGCAAAGAAAGAAACGGCAGTTACAATGGGTCAAAACCATGTCTGTGAGATCCCACAACGAAACAAATCTGTTACTAGCCGACGTGTTTTAAAAACCTTTTTAAAGGGTATTAAAACATCTGGTAGCGGTGGGTTTAGGCCGTTATAGTGGAGCCAGCGAGCTCCGCCCCACCGACCAATCGACAAACGCAAAACCAATACAACTGTAACACCAATCAATGTGTTTACAACTGTCCCAAAAACAAAACTGAGTCCCATTTGAGCTAAGGTTCTTCATAAAAAGAATAGAAATTGTGGAACAATATTTTCCACTAAGCAATTAATTCAAATCCCAACCCACTTGGTTCTTTTTCTTGGCTTTGCAGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCATCAAAAGTCACCATAAACCCTAACTAACTTATAAAAAGCATTGAATTTTAGCAACCAGTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCACAGTCGCATCAGCCCCGTGTAGCGGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCTGATACGACATCGTTTTGCCTCCACAGGTACGAATTTCTACCTCTTTTTATAATTTTTGGAATTATATATGAACAATAAAAAAGACATCTGACAGGAACAGACAAACAGATAAATAGATTGTTATTATTATTATTATTATTATTATTAATATAAGGTAAAAAAAAATAAAAATAAAAATAAAAATGGGGGCCATGTGGGTAAAGAGCTAAAGCCATGTGAGTGAGCTGTCTGGGCCAATGCAATTGTTGAAAGGAAATTGATGACAGAGTAGCATTTCATTATATAGACAGCTACTGCATTCCCCATGTGTGGTTCAGTTTCCAACCTATTACTATTATCAACCCCTTTCTCCCGGTATCCCCGTTTCGATGTGATTGATAGTTTTGTATTTAGATGATTCTTAGAGGTCACCCGACACGACCCCTCTTAGCCAATGTTCGAATTGGCTGATGATAAACTTACACGAGATCTATGTCATGAATGTAAGCGTAAGATTTCGCTGAAACACTCTCCCTAGTAGATGTATTTTAAAAACCGTGAGACTGACGGTGATATGTAACGAGTCAAAACGGACGATATTTGCTAATGGTAGGCTTGGACTGTTACAAATGGTATTAGGGTCAGACACTGAACGCTGACCCCTAAGAAGGTGGATTGTGAGATCTCCTATCAGTTGACGACTATACATTCAAGCCAAAATGAACAATATTGGCTAACAATGAGATATAGCTATTACAGTAAGGTTCGGTAAAAATAAAAATTTATTATTGATTTCCATTTCGGTAGCTGTGTCCAGTTGTCTTTCAAAATGGACCACTTCCAAATTCAAGTTTCCAACCTTTTTCTTTTTGGGTCTCGTTTAGAGATACACGAGTTGGATTGTAAAAAATTTTAAGAATCTCATTTAGAAGCGTATACGGGTTTATAGTTGGAATTTTTCCGACTAACCCGATATTTGAGATTGGTTGGTCAGCTGGTCTCGACCTGACATAGTTCACAACCCAATAAAAAACACCCAACTTTCTATTTTAGTTGGTCGGGTTGATCTGACCAAAAAAAATTTTGACCCACGAACTAAACCTACAAAAACGTTACCTAACCCTCAATTTTTATAGTTTTAGTTGAGTAGTTCAAGTTGTTCGAGTTTTACCGTTAATAAATTACAATAATTAAATTTTGTTAATATTAATTTGTATTAATGATGGGTTTCAGATTCACAGACATCTCAGCAAACTCCTCCAGAAGCTGAAGCTGAAGCTGTTACCTCGGAAACTTCAACCACCTGAGAGAACGAATTCACAAAAACCAAACCAAACCAAACCGAACCGAACCGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCCAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTTGATCGATTTGACCGTCTTTTTCACCCATTTTTCCACTTTTTT

mRNA sequence

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTCGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCCAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCCGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCACAGTCGCATCAGCCCCGTGTAGCGGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCTGATACGACATCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTCCAGAAGCTGAAGCTGAAGCTGTTACCTCGGAAACTTCAACCACCTGAGAGAACGAATTCACAAAAACCAAACCAAACCAAACCGAACCGAACCGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCCAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTTGATCGATTTGACCGTCTTTTTCACCCATTTTTCCACTTTTTT

Coding sequence (CDS)

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTCACTAAAGTGTTCGTCGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTCGGCGACATTCTTGAAGCTGTGATTATCACCGATAAGAACACCTCCAAATCCAAAGGATACGGCTTTGTAACGTTTCGAGACGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCCGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAACCCCTATCAAGGAAGTACAATGCAGGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCGCCCCCTGTCGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCATTACAATCCCCCAGAGGAGCATTTCCCAGTCCTTCACAGTCGCATCAGCCCCGTGTAGCGGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCCGCCGCCGCCGCCCAGTTTGAAGGCTCCTTCAGCTATCCTCCTCCTCTGATACGACATCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTCCAGAAGCTGAAGCTGAAGCTGTTACCTCGGAAACTTCAACCACCTGA

Protein sequence

MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPLNQPPLPPPPPPVVYSPYGYPTYTPDYGYHHQHYQHHQQPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSYPPPLIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT

Homology

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BLAST of Carg02975 vs. NCBI nr
Match: XP_022936617.1 (RNA-binding protein 38-like [Cucurbita moschata])

HSP 1 Score: 384.4 bits (986), Expect = 3.0e-103
Identity = 240/261 (91.95%), Postives = 240/261 (91.95%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYHHQXXXXXXQPVYNPYFYGYSL 180
           PSYSGVP XXXXXXXXXXXXXXXXSPYGYPTYT DYG    XXXXXX PVYNPYFYGYSL
Sbjct: 121 PSYSGVPPXXXXXXXXXXXXXXXXSPYGYPTYTTDYGXXXXXXXXXXXPVYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXXFEGSFSYPPPLIRHRFASTDSQ 240
           QSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXX              RFASTDSQ
Sbjct: 181 QSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFASTDSQ 240

Query: 241 TSQQTPPEAEAEAVTSETSTT 262
           TSQQTPPEAEAEAVTSETSTT
Sbjct: 241 TSQQTPPEAEAEAVTSETSTT 261

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BLAST of Carg02975 vs. NCBI nr
Match: XP_022975652.1 (RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding protein 38-like [Cucurbita maxima])

HSP 1 Score: 377.5 bits (968), Expect = 3.7e-101
Identity = 233/261 (89.27%), Postives = 234/261 (89.66%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYHHQXXXXXXQPVYNPYFYGYSL 180
           PSYSGVP XXXXXXXXXXXXXXX SPYGYPTYTPDYGY HQ      QPVYNPYFYGYS+
Sbjct: 121 PSYSGVP-XXXXXXXXXXXXXXXYSPYGYPTYTPDYGY-HQHYQHHQQPVYNPYFYGYSV 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXXFEGSFSYPPPLIRHRFASTDSQ 240
           QSPRGAFP PSQSHQPRVAVP XXXXXXXXXXXXXXXX              RFASTDSQ
Sbjct: 181 QSPRGAFPIPSQSHQPRVAVP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFASTDSQ 240

Query: 241 TSQQTPPEAEAEAVTSETSTT 262
           TSQQTP EAEAEAVTSETSTT
Sbjct: 241 TSQQTPTEAEAEAVTSETSTT 258

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BLAST of Carg02975 vs. NCBI nr
Match: XP_023535016.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.8 bits (813), Expect = 3.5e-83
Identity = 210/265 (79.25%), Postives = 212/265 (80.00%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYHHQXXXXXXQPVYNPYFYGYSL 180
           PSYSGVP         XXXXXXXX                 XXXXXX P+YNPYFYGYSL
Sbjct: 121 PSYSGVP-PPLNQPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVP----XXXXXXXXXXXXXXXXXFEGSFSYPPPLIRHRFAS 240
           QSPRGAFPSPSQSHQPRV VP    XXXXXXXXXXXXXXXXX                  
Sbjct: 181 QSPRGAFPSPSQSHQPRVPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 TDSQTSQQTPPEAEAEAVTSETSTT 262
            DSQTSQQTPP  EAEAVTSETSTT
Sbjct: 241 XDSQTSQQTPP--EAEAVTSETSTT 262

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BLAST of Carg02975 vs. NCBI nr
Match: XP_023522103.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.4 bits (786), Expect = 4.7e-80
Identity = 194/237 (81.86%), Postives = 196/237 (82.70%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           M+YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG
Sbjct: 1   MSYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYHHQXXXXXXQPVYNPYFYGYSL 180
           PSYSGVP         XXXXXXXX                 XXXXXX P+YNPYFYGYSL
Sbjct: 121 PSYSGVP-PPLNQPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLYNPYFYGYSL 180

Query: 181 QSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXXFEGSFSYPPPLIRHRFAST 238
           QSPRGAFPSPSQSHQPRV V XXXXXXXXXXXXXXXXX            RHRFAST
Sbjct: 181 QSPRGAFPSPSQSHQPRVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHRFAST 236

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BLAST of Carg02975 vs. NCBI nr
Match: XP_004136431.1 (PREDICTED: RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_3G889750 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77
Identity = 203/275 (73.82%), Postives = 213/275 (77.45%), Query Frame = 0


Query: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVP---XXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYHHQXXXXXXQPVYN----- 182
           PSY GVP      XXXXXXXXXXXXXXSPYGYP Y+PDYGYH     XXXQ VYN     
Sbjct: 124 PSYGGVPSPLNQPXXXXXXXXXXXXXXSPYGYPAYSPDYGYH-----XXXQAVYNPQVQQ 183

Query: 183 -------PYFYGYSLQSPRGAFPSPSQSHQ-PR--VAVPXXXXXXXXXXXXXXXXXFEGS 242
                  PY+YGYS  S    FP+PSQSHQ PR      XXXXXXXXXXXX   XX    
Sbjct: 184 PQMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRXXXXXXXXXXXXXXXXXXFEPXXXXXX 243

Query: 243 FSYPPPLIRHRFASTDSQTSQQTPPEAEAEAVTSE 258
                 +IRHRF+STDSQTSQQTP EAEA  VTS+
Sbjct: 244 XXXXXXIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 271

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BLAST of Carg02975 vs. TAIR10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-48
Identity = 134/284 (47.18%), Postives = 157/284 (55.28%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT+TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 125 SGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPD-YGYHHQXXXXXXQ-------------- 184
           +G+                    YGY TY PD +GYH        Q              
Sbjct: 126 TGM----AAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQXXXXXXXXXXXXXX 185

Query: 185 -----------PVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXX 244
                             YGYSLQ+PR                 XXXXXXXX        
Sbjct: 186 XXXXXXXXXXXXXXXXXXYGYSLQAPR----XXXXXXXXXXXXXXXXXXXXXRFSSPSFL 245

Query: 245 XFEGSFSYPPPLIRHRFASTDSQTSQQTPPEAEAEAVTSETSTT 262
            +  + S+ PPL     +ST+S+   Q  P AE EA T+    T
Sbjct: 246 VYPSNSSFAPPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEIT 277

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BLAST of Carg02975 vs. TAIR10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-47
Identity = 102/155 (65.81%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 5   HYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPTDEMRRYF+QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSYS 124
           RD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQG      GS  Q      
Sbjct: 66  RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQG------GSPSQYXXXXX 125

Query: 125 GVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYH 160
              XXXX               YGY TY  +YGYH
Sbjct: 126 XXXXXXXAPVQQAAAAQLMYPSYGY-TYNSEYGYH 153

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BLAST of Carg02975 vs. TAIR10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 158.3 bits (399), Expect = 6.4e-39
Identity = 96/196 (48.98%), Postives = 118/196 (60.20%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET ++ +R++FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPP-------RGRGQGGVNPYQGST 124
           FRD E+ARRACA+P P+IDGRRANCN+A++GRPRP  P        GR +   +PY G+ 
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLR-PASPYIGNV 131

Query: 125 MQAAPSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYHHQXXXXXXQPVYNPYFY 184
               P  S +                   PYG   Y P+Y Y         Q +Y+PY  
Sbjct: 132 Q--GPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQS------QGLYSPYMG 191

Query: 185 GYSLQ--SPRGAFPSP 191
              LQ     GA  SP
Sbjct: 192 QQYLQVYGVPGAVNSP 198

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BLAST of Carg02975 vs. TAIR10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-38
Identity = 71/95 (74.74%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET ++ +RR+F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPMIDGRRANCNIAAMGRPRP 99
           FRD E+ARRAC +P P+IDGRRANCN+A++GR RP
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRP 106

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BLAST of Carg02975 vs. TAIR10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 145.2 bits (365), Expect = 5.6e-35
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DT  TK+FVGGLAWET  D MRRYFEQFG+I+EAV+ITDKNT +SKGYGFVTF++AE+A 
Sbjct: 18  DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77

Query: 72  RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQG 108
           RAC N NP+IDGRRANCN+A +G  +P PP     G
Sbjct: 78  RACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHG 113

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BLAST of Carg02975 vs. Swiss-Prot
Match: sp|Q9M1S3|ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-26
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 10  FGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 69
           FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 70  ARRACANPNPMIDGRRANCNIAAM-GRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSG 126
           A RAC +  P+I+GRRANCN+A++ GR R SP     Q G  P  G+  +A P + G
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQG--PKNGN--RATPPHVG 123

[Close]

BLAST of Carg02975 vs. Swiss-Prot
Match: sp|Q5ZJX4|RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-25
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 12 DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
          DTTFTK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7  DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACANPNPMIDGRRANCNIAAMG-RPR 98
          RAC +PNP+IDGR+AN N+A +G +PR
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPR 93

[Close]

BLAST of Carg02975 vs. Swiss-Prot
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Carg02975 vs. Swiss-Prot
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Carg02975 vs. Swiss-Prot
Match: sp|Q5ZMA3|RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT+TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

[Close]

BLAST of Carg02975 vs. TrEMBL
Match: tr|A0A0A0LGV2|A0A0A0LGV2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 8.5e-78
Identity = 203/275 (73.82%), Postives = 213/275 (77.45%), Query Frame = 0


Query: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVP---XXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYHHQXXXXXXQPVYN----- 182
           PSY GVP      XXXXXXXXXXXXXXSPYGYP Y+PDYGYH     XXXQ VYN     
Sbjct: 124 PSYGGVPSPLNQPXXXXXXXXXXXXXXSPYGYPAYSPDYGYH-----XXXQAVYNPQVQQ 183

Query: 183 -------PYFYGYSLQSPRGAFPSPSQSHQ-PR--VAVPXXXXXXXXXXXXXXXXXFEGS 242
                  PY+YGYS  S    FP+PSQSHQ PR      XXXXXXXXXXXX   XX    
Sbjct: 184 PQMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRXXXXXXXXXXXXXXXXXXFEPXXXXXX 243

Query: 243 FSYPPPLIRHRFASTDSQTSQQTPPEAEAEAVTSE 258
                 +IRHRF+STDSQTSQQTP EAEA  VTS+
Sbjct: 244 XXXXXXIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 271

[Close]

BLAST of Carg02975 vs. TrEMBL
Match: tr|A0A0B0NQL3|A0A0B0NQL3_GOSAR (RNA-binding 38 OS=Gossypium arboreum OX=29729 GN=F383_08143 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 172/280 (61.43%), Postives = 194/280 (69.29%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTTFTKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIIT+KNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITEKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+I GRRANCNIA++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 121 PSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYH--------------HQXXXXX 180
           PSYSGV XXXXXXXXXXXXXXXXX PYG+PTY+P+YGYH              HQ     
Sbjct: 121 PSYSGV-XXXXXXXXXXXXXXXXXXPYGFPTYSPEYGYHQALYNPQIQQAQYYHQLYGSS 180

Query: 181 XQPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXXFEGSFS-Y 240
              + +PY++GYSLQ+PRG F +P     P                       EGSFS Y
Sbjct: 181 STSMGSPYYFGYSLQAPRGTFSAPQAQRIP------------GPSYLYYPSQMEGSFSTY 240

Query: 241 PPPLI---RHRFAS-TDSQTSQQTPPEAEAEAVTSETSTT 262
           PPP     RH F S  DSQT Q T  E+E  A+TSE+  T
Sbjct: 241 PPPPFHPTRHPFPSPADSQTPQPTSTESEPGAITSESPKT 266

[Close]

BLAST of Carg02975 vs. TrEMBL
Match: tr|A0A1U8PCB6|A0A1U8PCB6_GOSHI (RNA-binding protein 38-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107957765 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.2e-69
Identity = 171/280 (61.07%), Postives = 194/280 (69.29%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTTFTKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIIT+KNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITEKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+I GRRANCNI+++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNISSLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 121 PSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYH--------------HQXXXXX 180
           PSYSGV XXXXXXXXXXXXXXXXX PYG+PTY+P+YGYH              HQ     
Sbjct: 121 PSYSGV-XXXXXXXXXXXXXXXXXXPYGFPTYSPEYGYHQALYNPQIQQAQYYHQLYGSS 180

Query: 181 XQPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXXFEGSFS-Y 240
              + +PY++GYSLQ+PRG F +P     P                       EGSFS Y
Sbjct: 181 STSMGSPYYFGYSLQAPRGTFSAPQAQRIP------------GPSYLYYPSQMEGSFSTY 240

Query: 241 PPPLI---RHRFAS-TDSQTSQQTPPEAEAEAVTSETSTT 262
           PPP     RH F S  DSQT Q T  E+E  A+TSE+  T
Sbjct: 241 PPPPFHPTRHPFPSPADSQTPQPTSTESEPGAITSESPKT 266

[Close]

BLAST of Carg02975 vs. TrEMBL
Match: tr|A0A067GMP3|A0A067GMP3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039503mg PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 175/271 (64.58%), Postives = 189/271 (69.74%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFGDILEAVII+DKNT KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC NPNP+IDGRRANCNIA++GRPRPSPPRGR QGG  PY        
Sbjct: 61  FVTFRDPESARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPY---XXXXX 120

Query: 121 PSYSGVPXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYH-----HQXXXXXXQPVYNPYF 180
                  XXXXXXXXXXXXXXXX  P+GYPTYTPDYGYH     HQ       P+ +PY+
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYY 180

Query: 181 YGYSLQSPRGAFPSP-SQSHQPRVAVPXXXXXXXXXXXXXXXXXFEGSFSYPP--PLIRH 240
           YGYSLQSPRGA+ +P +Q   P  A P                  EG F  PP   L R 
Sbjct: 181 YGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQA---------EGIFPPPPTLQLPRQ 240

Query: 241 RFA-STDSQTSQQTPPEAE-AEAVTSETSTT 262
            F  S+DSQT QQT  E E A  VTSE+  T
Sbjct: 241 PFPFSSDSQTPQQTSAETEAAREVTSESPNT 259

[Close]

BLAST of Carg02975 vs. TrEMBL
Match: tr|B9GUX4|B9GUX4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G098100v3 PE=4 SV=2)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-67
Identity = 176/288 (61.11%), Postives = 190/288 (65.97%), Query Frame = 0


Query: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPH+RSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 1   MAYPHHRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRACA  NP+IDGRRANCNIA++GRPRPSPPRGR QG  NP+Q S    A
Sbjct: 61  FVTFRDPESARRACAERNPVIDGRRANCNIASLGRPRPSPPRGRPQGS-NPFQRSAPPGA 120

Query: 121 PSYSGV-----PXXXXXXXXXXXXXXXXXSPYGYPTYTPDYGYH---------------H 180
           PSY GV      XXXXXXXXXXXXXXXX + YGYPTYTPDYGYH               H
Sbjct: 121 PSYGGVAAPFPXXXXXXXXXXXXXXXXXYTHYGYPTYTPDYGYHQAMYNTQIQQPAQYYH 180

Query: 181 QXXXXXXQPVYNPYFYGYSLQSPRGAFPSPSQSHQPRVAVPXXXXXXXXXXXXXXXXXFE 240
           Q        +  PY+YGYSLQ+PR A   P     P                       E
Sbjct: 181 QMYGTSSSTIGAPYYYGYSLQAPRTALSGPQAQRIP------------GPSYLYFPTSME 240

Query: 241 GSF-SYPPPLI---RHRFAST---DSQTSQQTPPEAEAEAVTSETSTT 262
           GSF S+P P I   RH F S+   DS T Q T  E EA AVTSE+  T
Sbjct: 241 GSFSSFPSPTIQPARHPFPSSSTADSPTPQHTTTETEAGAVTSESPDT 275

The following BLAST results are available for this feature:

BLAST of Carg02975 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936617.1	3.0e-103	91.95	RNA-binding protein 38-like [Cucurbita moschata]	[more]
XP_022975652.1	3.7e-101	89.27	RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding prote...	[more]
XP_023535016.1	3.5e-83	79.25	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_023522103.1	4.7e-80	81.86	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]
XP_004136431.1	1.3e-77	73.82	PREDICTED: RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical pro...	[more]

BLAST of Carg02975 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78260.1	4.4e-48	47.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	2.2e-47	65.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	6.4e-39	48.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.9e-38	74.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46780.1	5.6e-35	68.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg02975 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M1S3\|ARP1_ARATH	2.7e-26	56.41	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
sp\|Q5ZJX4\|RBM38_CHICK	3.9e-25	62.07	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
sp\|Q6GQD3\|RB24A_XENLA	6.6e-25	59.34	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
sp\|Q9I8B3\|RB24B_XENLA	6.6e-25	59.34	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
sp\|Q5ZMA3\|RBM24_CHICK	6.6e-25	59.34	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Carg02975 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGV2\|A0A0A0LGV2_CUCSA	8.5e-78	73.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1	[more]
tr\|A0A0B0NQL3\|A0A0B0NQL3_GOSAR	3.2e-69	61.43	RNA-binding 38 OS=Gossypium arboreum OX=29729 GN=F383_08143 PE=4 SV=1	[more]
tr\|A0A1U8PCB6\|A0A1U8PCB6_GOSHI	7.2e-69	61.07	RNA-binding protein 38-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC10795...	[more]
tr\|A0A067GMP3\|A0A067GMP3_CITSI	1.6e-68	64.58	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039503mg PE=4 SV=1	[more]
tr\|B9GUX4\|B9GUX4_POPTR	1.4e-67	61.11	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G098100v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02975-RA	Carg02975-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 1.6E-24 score: 97.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..76 e-value: 6.6E-17 score: 61.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 16.517
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 3..110 e-value: 7.6E-26 score: 92.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..261
None	No IPR available	PANTHER	PTHR44828	FAMILY NOT NAMED	coord: 4..247
None	No IPR available	PANTHER	PTHR44828:SF3	RNA RECOGNITION MOTIF-CONTAINING PROTEIN	coord: 4..247
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 1.2634E-43 score: 143.525
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 9..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02975	Cla022101	Watermelon (97103) v1	carwmB0627
Carg02975	Cla023017	Watermelon (97103) v1	carwmB0634
Carg02975	Csa3G889750	Cucumber (Chinese Long) v2	carcuB0655
Carg02975	Csa2G368990	Cucumber (Chinese Long) v2	carcuB0652
Carg02975	MELO3C003568	Melon (DHL92) v3.5.1	carmeB0631
Carg02975	MELO3C011032	Melon (DHL92) v3.5.1	carmeB0630
Carg02975	ClCG08G011170	Watermelon (Charleston Gray)	carwcgB0617
Carg02975	ClCG11G014170	Watermelon (Charleston Gray)	carwcgB0610
Carg02975	CSPI02G21080	Wild cucumber (PI 183967)	carcpiB0662
Carg02975	CSPI03G45130	Wild cucumber (PI 183967)	carcpiB0665
Carg02975	Cucsa.160090	Cucumber (Gy14) v1	carcgyB0707
Carg02975	Cucsa.311530	Cucumber (Gy14) v1	carcgyB0712
Carg02975	CmaCh12G001620	Cucurbita maxima (Rimu)	carcmaB0892
Carg02975	CmaCh09G005630	Cucurbita maxima (Rimu)	carcmaB0889
Carg02975	CmaCh01G016110	Cucurbita maxima (Rimu)	carcmaB0894
Carg02975	CmoCh09G005520	Cucurbita moschata (Rifu)	carcmoB0865
Carg02975	CmoCh01G016570	Cucurbita moschata (Rifu)	carcmoB0870
Carg02975	CmoCh12G001250	Cucurbita moschata (Rifu)	carcmoB0868
Carg02975	CmoCh05G005290	Cucurbita moschata (Rifu)	carcmoB0877
Carg02975	Lsi04G022390	Bottle gourd (USVL1VR-Ls)	carlsiB575
Carg02975	Lsi08G009710	Bottle gourd (USVL1VR-Ls)	carlsiB579
Carg02975	Cp4.1LG11g04450	Cucurbita pepo (Zucchini)	carcpeB0894
Carg02975	Cp4.1LG06g04390	Cucurbita pepo (Zucchini)	carcpeB0906
Carg02975	Cp4.1LG07g01280	Cucurbita pepo (Zucchini)	carcpeB0907
Carg02975	Cp4.1LG02g05060	Cucurbita pepo (Zucchini)	carcpeB0902
Carg02975	CsGy2G020800	Cucumber (Gy14) v2	carcgybB0629
Carg02975	CsGy3G042620	Cucumber (Gy14) v2	carcgybB0632
Carg02975	MELO3C003568.2	Melon (DHL92) v3.6.1	carmedB0640
Carg02975	MELO3C011033.2	Melon (DHL92) v3.6.1	carmedB0639
Carg02975	CsaV3_3G047560	Cucumber (Chinese Long) v3	carcucB0666
Carg02975	CsaV3_2G029740	Cucumber (Chinese Long) v3	carcucB0663
Carg02975	Cla97C11G220150	Watermelon (97103) v2	carwmbB0656
Carg02975	Cla97C08G154140	Watermelon (97103) v2	carwmbB0664
Carg02975	Bhi09G002069	Wax gourd	carwgoB0752

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg02975	Carg08193	Silver-seed gourd	carcarB066
Carg02975	Carg25633	Silver-seed gourd	carcarB559

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02975	Cucurbita maxima (Rimu)	carcmaB0900