CmoCh12G001250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G001250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding protein 24
Location	Cmo_Chr12 : 774906 .. 777798 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCCCTTTCTTCAACAGTTCAAATCCGTCTCTGCAAAATTAAGAAATTCCTCTCCCATGGCCGCAACCAAACAAACAAAGAACGCCAACGCCACATAACAACCCCTCCAATTTCTTCTATAAATCTCCATTAAACCTTCTCTGTCTTCTTAATTCATGAACATCACCGTCCACCACACCCACCGCCGCCCTCCTTCCTCCTCCTAATCATTCCTCCGCCGCCGCCATGGCCGATCATTTCTCCAATCCCCCGCCGCTCTTCGGCGACACCACATGGACCAAAGTCTTCGTCGGCGGCCTCGCTTGGGAGACCAAATCCGACGAAATGCACAGATTCTTCCAACAGTTCGGCGAGATTCTCGAAGCCGTCATAATCAAAGATAAAACCACCGGCAAATCCAAAGGCTACGGATTCGTAAGTTCCTTATTCCTCTCCGATTCCATTTCCGGTTACGATTTTAATTCCGCCGTCTCCGATTTTGTAATTAGGTCACTTTCCGAGATCCTCAATCGGCGAGAATGGCCTGCGCTAATCCAAATCCGATTATCTGTGGAAGACGAGCAAACTGTAACATCGCCGTCTTCGGTCCGCCTCGTCCGCCGCCGTCCGGAGGTAACTTTCCCAATCTCATTACCGGAAAACGATCGATTGATTTCTGTTAACATTCTTCTCGATTTTACAGGGAGAATCCAAACCACAGCGTCGTACGGCGGGTTACGGCCGTCGTTTCCGCCGCCGCCGGTCATTTTCCCGCCATACAGGTACATGATTCTTCGATGGCGACAATGTTACAAGGAACCAACAATTTACCTCGACAGGAAGTCAAATGTTTTTTGTTTTTTTGTTTCTTTTTGCAGATACCGATCCTACGCCCCAAATTACACAGTACCTTATGGCTATGGCTATGGCATTGGATACGGCCATGGCTATGGCTATGGTCATGGCTATGGCTATGGCTATGACTGTTCTTCATCATCACCGGCTCCAAGAGCGCCATTTTCATCACCATCATCAGCGGCAGCACCCTATGTTCCGTACTATATGAATCAGCAGGGGTTGTTCTACTCTCCGATGCACCAGATTATTACTCCCAGTACTGGTAATTATTTATCGTTCTATTAAATTCTTGTTTTATTTTGATAATAATATCATTATTGGGCGGGGATTGTCTGGAGAGAAACACATGGGTCATGGCCTGCGCCCATGTGAGGACTGAGCTGTCTGATGGGTCATTGGCCATTCACAACCCCATGAACAGGGGTGTATCAAACGCCATGCCAGATAGGATTTTTAGGTTCTTTCCAAAGTTTGCGTAACAATTCAATCTCACTACTGGTAAATATTGTTCTCTTTTTAGCTTTTCTTCAAAGGTTTAAAACGCTTTTATTAGGTAGAAGCTTCCACACCCTTGTAAATAATGTTAGATGAACACGACTCTCGACAATTGTATGATATTGTTCGTTTTGAGCATAAGCTCTCGTGGCTTTGCTTTCGGGCTTCCCCAGAATGTCTCATACCAATGTAGAGAGTATTATTTGATTATAAACTCATGATCATTCCTTAAATTAGTCAACGTGGGACTTCTATACACGATTATAAACTCATTATCATTCTTTAAATTAGCCAACGTGGAACTTTCATCCACCCTCCTTAAGGGTCAGCGTTCTCGCTGACATACTATTCGGTAACTGCTAGTGGTGGGTGAACTTTCATCCACCCTCTTTAAGGGTCAACGTCCTCACTGGCATACTATCTAGTGACTGACTCTAATACTGTAATACACCCCAGTCTGGAAGGGAAAATCTAGAGAGGATAATATCTGCTAGTGGTGGGTGAACTCTCATCCACCCTCCTTAAGGGTCAGTGTCCTCGTTGGCATACTATCCAGTGACTGGCTCTAATACTGTAATAGCCAAAGTCTGGAAGGAAAAGTCTAGAGAGGATAATATCTGCTAGTGGTGGGTGAACTCTCATCCACCCTCGTTGGCATACTATCCAGTGACTGGCTCTAATACTGTAATAGCCAAAGTCTGGAAGGAAAAGTCTAGAGAGGATAATATCTGCTAGTGGTGCTAGTGGTGGGTGAACTTTCATCCACCCTCCTTAAAGGTCAGCGTCCTCGTTAACATACTATCCGATGACTGGCTCTAATACTGTAATAGCCTAAGTCTGGAAGGAAAAGTCTAGAGAGGATAATATCTGCTAGTGGTGGGTGAACTTTCATCCACCCTCCTTAAGGGTCAGCGTCCTCGCTGGCATACTATCTAGTGACTGGCTCTAATACTATAATAGCTCAAGTCTGAAAGGGAAAGTTTAGAGAGGATAATATCTGCTACTGGTGGGTTTGGGCGATTATAGATTAAATTTTAAATTATTTTGATAAATAATCGTAATAAATAATATGAATAAGTTGGTTACGTAGCATTTTAATACTTAAAATATGTAAAACAGGTAATATTTTAAAAAGAATATAAAAAAACATTCTAAAATTATTCCCCATAAAACATAATCCGAACAAAAAAAAATGGCAGAAAATAATATCGAGATACGAAAAACAAAATTCAATTATTCCTAGCAAGTTTTCTCTTATAATTATCATAAACAACAAAAATCTAACTATTCATTGGTAAGACAGATCTTGTCGAATGTATTTTAATGTTATATGTCTGTCACTTAGATCTATTAAACACAAAATTTAATGCATACGTAGACGTTGAATTGTTAATTTAATTATTAACCTAAGTTTAAAAAATATAATACGATCAAATTATATATATATATAATTTATGTTTATTTTTGGATGCGAGTGTTCAGGTTGGGAGACTCCGCAGCATACTCCAACGGACACAGAAGGTGGAGGCAGTGGCTTCAATAGCCCAAACTCTTCATAG

mRNA sequence

CAACCCCTTTCTTCAACAGTTCAAATCCGTCTCTGCAAAATTAAGAAATTCCTCTCCCATGGCCGCAACCAAACAAACAAAGAACGCCAACGCCACATAACAACCCCTCCAATTTCTTCTATAAATCTCCATTAAACCTTCTCTGTCTTCTTAATTCATGAACATCACCGTCCACCACACCCACCGCCGCCCTCCTTCCTCCTCCTAATCATTCCTCCGCCGCCGCCATGGCCGATCATTTCTCCAATCCCCCGCCGCTCTTCGGCGACACCACATGGACCAAAGTCTTCGTCGGCGGCCTCGCTTGGGAGACCAAATCCGACGAAATGCACAGATTCTTCCAACAGTTCGGCGAGATTCTCGAAGCCGTCATAATCAAAGATAAAACCACCGGCAAATCCAAAGGCTACGGATTCGTCACTTTCCGAGATCCTCAATCGGCGAGAATGGCCTGCGCTAATCCAAATCCGATTATCTGTGGAAGACGAGCAAACTGTAACATCGCCGTCTTCGGTCCGCCTCGTCCGCCGCCGTCCGGAGGGAGAATCCAAACCACAGCGTCGTACGGCGGGTTACGGCCGTCGTTTCCGCCGCCGCCGGTCATTTTCCCGCCATACAGATACCGATCCTACGCCCCAAATTACACAGTACCTTATGGCTATGGCTATGGCATTGGATACGGCCATGGCTATGGCTATGGTCATGGCTATGGCTATGGCTATGACTGTTCTTCATCATCACCGGCTCCAAGAGCGCCATTTTCATCACCATCATCAGCGGCAGCACCCTATGTTCCGTACTATATGAATCAGCAGGGGTTGTTCTACTCTCCGATGCACCAGATTATTACTCCCAGTACTGGTTGGGAGACTCCGCAGCATACTCCAACGGACACAGAAGGTGGAGGCAGTGGCTTCAATAGCCCAAACTCTTCATAG

Coding sequence (CDS)

ATGGCCGATCATTTCTCCAATCCCCCGCCGCTCTTCGGCGACACCACATGGACCAAAGTCTTCGTCGGCGGCCTCGCTTGGGAGACCAAATCCGACGAAATGCACAGATTCTTCCAACAGTTCGGCGAGATTCTCGAAGCCGTCATAATCAAAGATAAAACCACCGGCAAATCCAAAGGCTACGGATTCGTCACTTTCCGAGATCCTCAATCGGCGAGAATGGCCTGCGCTAATCCAAATCCGATTATCTGTGGAAGACGAGCAAACTGTAACATCGCCGTCTTCGGTCCGCCTCGTCCGCCGCCGTCCGGAGGGAGAATCCAAACCACAGCGTCGTACGGCGGGTTACGGCCGTCGTTTCCGCCGCCGCCGGTCATTTTCCCGCCATACAGATACCGATCCTACGCCCCAAATTACACAGTACCTTATGGCTATGGCTATGGCATTGGATACGGCCATGGCTATGGCTATGGTCATGGCTATGGCTATGGCTATGACTGTTCTTCATCATCACCGGCTCCAAGAGCGCCATTTTCATCACCATCATCAGCGGCAGCACCCTATGTTCCGTACTATATGAATCAGCAGGGGTTGTTCTACTCTCCGATGCACCAGATTATTACTCCCAGTACTGGTTGGGAGACTCCGCAGCATACTCCAACGGACACAGAAGGTGGAGGCAGTGGCTTCAATAGCCCAAACTCTTCATAG

Homology

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BLAST of CmoCh12G001250 vs. Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 14 DTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQSAR 73
          DTT+TK+FVGGL + T    + ++F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 74 MACANPNPIICGRRANCNIAVFG 97
           AC +PNPII GR+AN N+A  G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89

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BLAST of CmoCh12G001250 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 14 DTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQSAR 73
          DTT+TK+FVGGL + T    + ++F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 74 MACANPNPIICGRRANCNIAVFG 97
           AC +PNPII GR+AN N+A  G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89

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BLAST of CmoCh12G001250 vs. Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-21
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1


Query: 14  DTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQSAR 73
           DTT+TK+FVGGL + T    + ++F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 74  MACANPNPIICGRRANCNIAVFG-PPRPPPSGGRIQTTASYG-------GLRPSFPPPPV 130
            AC +PNPII GR+AN N+A  G  PR   +G  +     +        GL P +  PP 
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPA 147

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BLAST of CmoCh12G001250 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-21
Identity = 82/212 (38.68%), Postives = 100/212 (47.17%), Query Frame = 1


Query: 12  FGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQS 71
           FGDT  TKVFVGGLAW+T  + M+  F ++G+ILEAVII DK T +SKGYGFVTF+D ++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 72  ARMACANPNPIICGRRANCNIAVFG----------PPRPPPSGGRIQTTASYGGLRPSFP 131
           A  AC +  PII GRRANCN+A  G           P+  P  G   T    G     + 
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNHSQWYY 130

Query: 132 P-------------PPVIFPPYRYRSYAPNYTVPYGYGY-GIGYGHGYGYGHGYGYGYDC 191
           P               V F  Y     APN T     GY G  Y +GY     Y      
Sbjct: 131 PSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVGGTYMNGY-----YAQMQPQ 190

Query: 192 SSSSPAPR-------APFSSPSSAAAPYVPYY 193
             S P P+               AA+P VP+Y
Sbjct: 191 PQSQPQPQYYHHHMYGGGRVMVGAASPMVPFY 217

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BLAST of CmoCh12G001250 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-20
Identity = 73/212 (34.43%), Postives = 101/212 (47.64%), Query Frame = 1


Query: 14  DTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQSAR 73
           DTT+TK+FVGGL + T    + ++F+ FGEI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 74  MACANPNPIICGRRANCNIAVFG-PPRPPPSGGRIQTTASYGGL--RPSFPPPPVIFP-- 133
            AC +PNPII GR+AN N+A  G  PR    G        +  L  RP   P   ++P  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQA 126

Query: 134 --------PYRYRSYAPNYTVPYGYGYGIGYGHGYGYGHGYGYGYDCSSSSPAPRAPFSS 193
                   P+   + A   T PY    G  Y             Y  ++++ A  A +  
Sbjct: 127 FVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ-----------YSAAAAAAAAAAAYDQ 186

Query: 194 PSSAAAPYVPYYMNQQGLFYSPMHQIITPSTG 213
              AA+P    Y+   G  Y+    I   + G
Sbjct: 187 YPYAASPAAAGYVTAGGYGYAVQQPITAAAPG 207

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BLAST of CmoCh12G001250 vs. TrEMBL
Match: A0A0A0LLP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 9.3e-78
Identity = 176/278 (63.31%), Postives = 194/278 (69.78%), Query Frame = 1


Query: 1   MADH----FSNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTG 60
           MAD+     ++PPP  GDTTWTK+FVGGLAWET+S EMH FFQQFG+ILEAVII+DK TG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFRDPQSARMACANPNPIICGRRANCNIAVFGPPRPPP----SGGR-----I 120
           KSKGYGFVTF+DP+SAR ACANPNPIICGRRANCNIA FG PRPPP    SGGR     +
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QTTA-----SYGGLRPSFPPPPVIFPPYRYRSYAPNYTVPYG---YGYGIGYGHGY---- 180
           Q+TA     SYGGLRP FPPPP+IFP YRYRSYAPNYTVPY    Y   I     Y    
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPPLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 ------GYGHGYGYGYDCS-SSSPAPRAPFS----SPSSAAAPYVPYYMN-----QQGLF 237
                    + Y YGY  S SSS  PRA FS     P S +  Y PYY N     QQGL 
Sbjct: 181 SPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVHGHPPQSPS--YFPYYTNYTHMQQQGLV 240

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BLAST of CmoCh12G001250 vs. TrEMBL
Match: A0A067GMP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039503mg PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.1e-45
Identity = 122/242 (50.41%), Postives = 141/242 (58.26%), Query Frame = 1


Query: 12  FGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQS 71
           FGDTT+TKVFVGGLAWET ++EM R+F+QFG+ILEAVII DK TGKSKGYGFVTFRDP+S
Sbjct: 10  FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPES 69

Query: 72  ARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQ-----------TTASYGGLRPSF 131
           AR AC NPNP+I GRRANCNIA  G PRP P  GR Q              SYGG+  S 
Sbjct: 70  ARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYHQQQGGAPSYGGVAASL 129

Query: 132 PPPP-----VIFPPYRYRSYAPNYTVPYGYGYGIGYGHGYG-----YGHGYGYGYDCSS- 191
           PPPP     VI+ P+ Y    P YT  YGY     Y   YG      G  Y YGY   S 
Sbjct: 130 PPPPPPPPSVIYQPFGY----PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSP 189

Query: 192 --SSPAPRAPFSSPSSAAAPYVPYYMNQQGLFYSP-----MHQIITPSTGWETPQHTPTD 225
             +  AP+A    PS A   Y+ Y    +G+F  P       Q    S+  +TPQ T  +
Sbjct: 190 RGAYSAPQAQRMPPSPAGPSYLYYPTQAEGIFPPPPTLQLPRQPFPFSSDSQTPQQTSAE 247

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BLAST of CmoCh12G001250 vs. TrEMBL
Match: A0A0D2TUH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.1e-45
Identity = 129/274 (47.08%), Postives = 156/274 (56.93%), Query Frame = 1


Query: 4   HFSNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGF 63
           H+ +P   FGDTT+TKVFVGGLAWET ++EM R+FQQFGEILEAVII DK TGKSKGYGF
Sbjct: 5   HYRSP---FGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITDKNTGKSKGYGF 64

Query: 64  VTFRDPQSARMACANPNPIICGRRANCNIAVFGPPRPPPSGGR-----------IQTTAS 123
           VTFRDP+SAR AC +PNP+I GRRANCNIA  G PRP P  GR            Q T S
Sbjct: 65  VTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGSSPFQGVAQQGTPS 124

Query: 124 YGGLRPSFPP------PPVIFPPYRYRSYAPNYTVPYGYGYGI---------GYGHGYG- 183
           Y G+  + PP      PPVI+PPY + +Y+P     YGY   +          Y   YG 
Sbjct: 125 YSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPE----YGYHQAVYNPQIQQAQYYHQLYGS 184

Query: 184 ----YGHGYGYGYDCSSSSPAPRAPFSSPSSAAAP---YVPYYMNQQGLF--YSP----- 236
                G  Y +GY    S  APR  FS+P +   P   Y+ Y    +G F  Y P     
Sbjct: 185 SSTSMGSPYYFGY----SLQAPRGTFSAPQAQRIPGPSYLYYPSQMEGSFSTYPPPPFHP 244

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BLAST of CmoCh12G001250 vs. TrEMBL
Match: V4TC42_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002164mg PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.1e-44
Identity = 122/251 (48.61%), Postives = 142/251 (56.57%), Query Frame = 1


Query: 12  FGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQS 71
           FGDTT+TKVFVGGLAWET ++EM R+F+QFG+ILEAVII DK TGKSKGYGFVTFRDP+S
Sbjct: 10  FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPES 69

Query: 72  ARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQ-----------TTASYGGLRPSF 131
           AR AC NPNP+I GRRANCNIA  G PRP P  GR Q              SYGG+  S 
Sbjct: 70  ARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYHQQQGGAPSYGGVAASL 129

Query: 132 PPPP-----VIFPPYRYRSYAPNYTVPYGYGYGI---------GYGHGYG-----YGHGY 191
           PPPP     VI+ P+ Y    P YT  YGY   +          Y   YG      G  Y
Sbjct: 130 PPPPPPPPSVIYQPFGY----PTYTPDYGYHQAVYNPQVQQPQYYHQMYGTTSTPMGSPY 189

Query: 192 GYGYDCSS---SSPAPRAPFSSPSSAAAPYVPYYMNQQGLFYSP-----MHQIITPSTGW 225
            YGY   S   +  AP+A    PS A   Y+ Y    +G+F  P       Q    S+  
Sbjct: 190 YYGYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYPTQAEGIFPPPPTLQLPRQPFPFSSDS 249

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BLAST of CmoCh12G001250 vs. TrEMBL
Match: A0A0D2V5B5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G039700 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.8e-44
Identity = 129/272 (47.43%), Postives = 153/272 (56.25%), Query Frame = 1


Query: 4   HFSNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGF 63
           H+ +P   FGDTT+TKVFVGGL WET ++EM R+F+QFGEILEAVII DK TGKSKGYGF
Sbjct: 32  HYRSP---FGDTTFTKVFVGGLPWETPTEEMRRYFEQFGEILEAVIITDKVTGKSKGYGF 91

Query: 64  VTFRDPQSARMACANPNPIICGRRANCNIAVFGPPRP-PPSGGR-------IQTTASYGG 123
           VTFRDP SAR AC +PNP+I GRRANCNIA FG PRP  P GG         Q  A Y G
Sbjct: 92  VTFRDPDSARRACVDPNPVIGGRRANCNIASFGRPRPLQPRGGNNSPYQGVAQQGAPYSG 151

Query: 124 LR-------PSFPPPPVIF-PPYRYRSYAPNYTVPYGYGYGI---------GYGHGYG-- 183
           +        P  PPPPV++ PPY Y +Y+P     YG+   +          Y   YG  
Sbjct: 152 VAAPVHPHPPPPPPPPVMYPPPYGYPTYSPE----YGFHQAVYNPQIQQQQYYHQLYGSS 211

Query: 184 ---YGHGYGYGYDCSSSSPAPRAPFSSPSSAAAP-----YVPYYMNQQ-GLFYSPMHQ-- 236
               G  Y YGY    S  APR  FS+P +   P     Y P  M     ++ SP  Q  
Sbjct: 212 STTMGSPYYYGY----SLQAPRGTFSAPQAQRIPGPSFLYYPTQMEGSFSMYPSPPFQFT 271

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BLAST of CmoCh12G001250 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-39
Identity = 87/146 (59.59%), Postives = 100/146 (68.49%), Query Frame = 1


Query: 12  FGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQS 71
           FGDTT+TKVFVGGLAWET +DEM R+F+QFGEILEAVII DK TGKSKGYGFVTFR+  S
Sbjct: 11  FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70

Query: 72  ARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQT----------TASYGGLRPSFP 131
           A  A A+PNP+I GR+ANCNIA FG PRP P  GR QT           ++Y G+  + P
Sbjct: 71  ATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGM--AAP 130

Query: 132 PPPVIFPPYRYRSYAPNYTVPYGYGY 148
            PP   P   Y SY   Y  P  +GY
Sbjct: 131 LPPAAAPQLMYPSYGYTYN-PDQFGY 153

[Close]

BLAST of CmoCh12G001250 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-36
Identity = 99/222 (44.59%), Postives = 124/222 (55.86%), Query Frame = 1


Query: 4   HFSNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGF 63
           H+ N P  FGDTT+TKVFVGGLAWET+S+ + + F+Q+GEILEAV+I DK TG+SKGYGF
Sbjct: 12  HYLNSP--FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGF 71

Query: 64  VTFRDPQSARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQTTASYGGLRPSFP-- 123
           VTFRDP++AR ACA+P PII GRRANCN+A  G PRPP     I      G LRP+ P  
Sbjct: 72  VTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMP--GRLRPASPYI 131

Query: 124 -----PPPVIFPPYRYRSYAPNYTVPYGYGYGIGYGHGY-GYGHGYGYGYDCSSSSPAPR 183
                P   +   Y Y+       +PY Y  G+ Y +G   YG  Y Y     S S    
Sbjct: 132 GNVQGPRGSLIGNYPYQQ-----PLPYNYQQGVVYPYGVTAYGPEYMY-----SQSQGLY 191

Query: 184 APFSSPSSAAAPYVPYYMNQQGLFYSPMHQIITPSTGWETPQ 218
           +P+          VP  +N     Y  + Q I    G+   Q
Sbjct: 192 SPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQ 219

[Close]

BLAST of CmoCh12G001250 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-34
Identity = 99/205 (48.29%), Postives = 113/205 (55.12%), Query Frame = 1


Query: 12  FGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQS 71
           FGDTT TKVFVGGLAWET +DEM R+F QFGEILEAVII DK TGKSKGYGFVTFRD  S
Sbjct: 11  FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70

Query: 72  ARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQ--TTASY-GGLRPSF-----PPP 131
           A  A A+PNP+I GR+ANCNIA FG PRP    GR Q  + + Y GG + S+     P  
Sbjct: 71  ATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSSYTGMAAPVQ 130

Query: 132 PVIFPPYRYRSYAPNYTVPYGYGYGI--------GYGHGYGYGHGYGYGYDCSSSSPAPR 191
                   Y SY   Y   YGY   +         Y     YG G       S+  P+P 
Sbjct: 131 QAAAAQLMYPSYGYTYNSEYGYHQALYNAQLQQAQYYQQQMYGGGGATSPSSSNIMPSPY 190

Query: 192 APFSSPSSAAAPYVPYYMNQQGLFY 201
               +PS       PY  +QQ   Y
Sbjct: 191 YYLQAPSPR-----PYLHHQQHYQY 210

[Close]

BLAST of CmoCh12G001250 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 141.0 bits (354), Expect = 9.6e-34
Identity = 98/235 (41.70%), Postives = 122/235 (51.91%), Query Frame = 1


Query: 4   HFSNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGF 63
           H+ N P  FGDTT+TKVFVGGLAWET+S+ + R F Q+G+ILEAV+I DK TG+SKGYGF
Sbjct: 12  HYLNSP--FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGF 71

Query: 64  VTFRDPQSARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQTTASYGGLRPSFPPP 123
           VTFRDP++AR AC +P PII GRRANCN+A  G  RPP     I      G +RP  P  
Sbjct: 72  VTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAP--GRVRPPSPYV 131

Query: 124 PVIFPPYRYRSYAPNYTVPYGYGYGIGYGHGYG---YGHGYGYGYDCSSSSPAPRAPFSS 183
             +  P      +  Y  P  Y Y  G  + YG   YG  Y Y     S S     P+  
Sbjct: 132 GSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY-----SQSQGFYGPYMG 191

Query: 184 PSSAAAPYVPYYMNQQGLFYSPMHQIITPSTGWETPQHTPTDTEGGGSGFNSPNS 236
                   VP  +N  G  Y  +   I  + G+             G G++ P S
Sbjct: 192 QQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYT-----------AGQGYSHPGS 226

[Close]

BLAST of CmoCh12G001250 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 95/226 (42.04%), Postives = 121/226 (53.54%), Query Frame = 1


Query: 13  GDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQSA 72
           GDTT+TKVFVGGLAWET  + M + F+QFGEILEAV+I DK +G+SKGYGFVTFR+ ++A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 73  RMACANPNPIICGRRANCNIAVFGPPRPPPS------GGRIQT-TASYGGLRPSFPPPPV 132
           R AC +  P+I GRRANCN+A  G  R  PS      GGRI         ++  F PPP 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127

Query: 133 IFPP------------YRYRSYAPNY----TVPYG-YGYGIGYGHG-YGYGHGYGYGYDC 192
             PP            + Y  Y+P+Y    T  YG YG   G  +G YG  +  G G   
Sbjct: 128 PQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGNRNSGGGGLTA 187

Query: 193 SSSSPAPRAP---------FSSPSSAAAPYVPYYMNQQGLFYSPMH 205
           +++S  P  P         FS P        P+Y +     Y+P H
Sbjct: 188 AAASATPFYPCGGGHGGVQFSQPQ-------PFYHHLSS--YNPHH 224

[Close]

BLAST of CmoCh12G001250 vs. NCBI nr
Match: gi|778671668|ref|XP_004152633.2| (PREDICTED: RNA-binding protein 38-like [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 1.3e-77
Identity = 176/278 (63.31%), Postives = 194/278 (69.78%), Query Frame = 1


Query: 1   MADH----FSNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTG 60
           MAD+     ++PPP  GDTTWTK+FVGGLAWET+S EMH FFQQFG+ILEAVII+DK TG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFRDPQSARMACANPNPIICGRRANCNIAVFGPPRPPP----SGGR-----I 120
           KSKGYGFVTF+DP+SAR ACANPNPIICGRRANCNIA FG PRPPP    SGGR     +
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QTTA-----SYGGLRPSFPPPPVIFPPYRYRSYAPNYTVPYG---YGYGIGYGHGY---- 180
           Q+TA     SYGGLRP FPPPP+IFP YRYRSYAPNYTVPY    Y   I     Y    
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPPLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 ------GYGHGYGYGYDCS-SSSPAPRAPFS----SPSSAAAPYVPYYMN-----QQGLF 237
                    + Y YGY  S SSS  PRA FS     P S +  Y PYY N     QQGL 
Sbjct: 181 SPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVHGHPPQSPS--YFPYYTNYTHMQQQGLV 240

[Close]

BLAST of CmoCh12G001250 vs. NCBI nr
Match: gi|659088182|ref|XP_008444844.1| (PREDICTED: RNA-binding protein 38-like [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-76
Identity = 170/270 (62.96%), Postives = 188/270 (69.63%), Query Frame = 1


Query: 6   SNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVT 65
           ++PPP  GDTTWTK+FVGGLAWET+S EMH FFQQFG+ILEAVII+DK TGKSKGYGFVT
Sbjct: 10  NHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVT 69

Query: 66  FRDPQSARMACANPNPIICGRRANCNIAVFGPPRPPP----SGGR-----IQTTA----- 125
           F+DP+SAR ACANPNPIICGRRANCNIA FG PRPPP    SGGR     +Q+T+     
Sbjct: 70  FKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNLQSTSPAAAG 129

Query: 126 SYGGLRPSFPPPPVIFPPYRYRSYAPNYTVPYG-------------YGYGIGYGHGYGYG 185
           SYGGLRP FPPP +IFP YRYRSYAPNYTVPY              Y             
Sbjct: 130 SYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSPSPSPSSSSS 189

Query: 186 HGYGYGYDCS-SSSPAPRAPFS----SPSSAAAPYVPYYMN------QQGLFYSPMHQII 237
           + YGYGY  S SSS  PRA FS     P S +  Y PYY N      Q GLFY+PM QII
Sbjct: 190 YYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPS--YFPYYTNYTHMQQQAGLFYTPMPQII 249

[Close]

BLAST of CmoCh12G001250 vs. NCBI nr
Match: gi|1009169788|ref|XP_015865854.1| (PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 130/268 (48.51%), Postives = 148/268 (55.22%), Query Frame = 1


Query: 12  FGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQS 71
           FGDTT+TKVFVGGLAWET ++EM R+F+QFGEILEAVII DK TGKSKGYGFVTFRDP+S
Sbjct: 42  FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPES 101

Query: 72  ARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQTTASYGGLRPSF----------- 131
           AR +CANPNP+I GRRANCNIA  G PRP P  GR Q  + Y G  P             
Sbjct: 102 ARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGSPYQGGTPHVAPPAYSGVPTP 161

Query: 132 ----PPPPVIFPPYRYRSYAPNYTVPYGYG---YGIGYGHGYGYGHGYG----------- 191
               PPPPVI+ PY Y    P YT  YGY    Y     H   Y   YG           
Sbjct: 162 LPPPPPPPVIYQPYGY----PTYTPDYGYHQALYNPQMQHSQYYHQLYGTSSSTMPTPYY 221

Query: 192 YGYDCSSSSPAPRAPFSSPSSAA----APYVPYYMNQQG----LFYSPMHQ-------II 236
           YGY    S  APR  FS+P  AA     P   YY  Q        Y P H        I 
Sbjct: 222 YGY----SVQAPRGTFSTPQQAAHRMPGPSYLYYPTQMEGTSFTTYPPPHPTTRLHSLIP 281

[Close]

BLAST of CmoCh12G001250 vs. NCBI nr
Match: gi|641862316|gb|KDO81003.1| (hypothetical protein CISIN_1g039503mg [Citrus sinensis])

HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 122/242 (50.41%), Postives = 141/242 (58.26%), Query Frame = 1


Query: 12  FGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGFVTFRDPQS 71
           FGDTT+TKVFVGGLAWET ++EM R+F+QFG+ILEAVII DK TGKSKGYGFVTFRDP+S
Sbjct: 10  FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYGFVTFRDPES 69

Query: 72  ARMACANPNPIICGRRANCNIAVFGPPRPPPSGGRIQ-----------TTASYGGLRPSF 131
           AR AC NPNP+I GRRANCNIA  G PRP P  GR Q              SYGG+  S 
Sbjct: 70  ARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYHQQQGGAPSYGGVAASL 129

Query: 132 PPPP-----VIFPPYRYRSYAPNYTVPYGYGYGIGYGHGYG-----YGHGYGYGYDCSS- 191
           PPPP     VI+ P+ Y    P YT  YGY     Y   YG      G  Y YGY   S 
Sbjct: 130 PPPPPPPPSVIYQPFGY----PTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYYGYSLQSP 189

Query: 192 --SSPAPRAPFSSPSSAAAPYVPYYMNQQGLFYSP-----MHQIITPSTGWETPQHTPTD 225
             +  AP+A    PS A   Y+ Y    +G+F  P       Q    S+  +TPQ T  +
Sbjct: 190 RGAYSAPQAQRMPPSPAGPSYLYYPTQAEGIFPPPPTLQLPRQPFPFSSDSQTPQQTSAE 247

[Close]

BLAST of CmoCh12G001250 vs. NCBI nr
Match: gi|823227932|ref|XP_012446741.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Gossypium raimondii])

HSP 1 Score: 189.1 bits (479), Expect = 8.7e-45
Identity = 129/274 (47.08%), Postives = 156/274 (56.93%), Query Frame = 1


Query: 4   HFSNPPPLFGDTTWTKVFVGGLAWETKSDEMHRFFQQFGEILEAVIIKDKTTGKSKGYGF 63
           H+ +P   FGDTT+TKVFVGGLAWET ++EM R+FQQFGEILEAVII DK TGKSKGYGF
Sbjct: 5   HYRSP---FGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITDKNTGKSKGYGF 64

Query: 64  VTFRDPQSARMACANPNPIICGRRANCNIAVFGPPRPPPSGGR-----------IQTTAS 123
           VTFRDP+SAR AC +PNP+I GRRANCNIA  G PRP P  GR            Q T S
Sbjct: 65  VTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGSSPFQGVAQQGTPS 124

Query: 124 YGGLRPSFPP------PPVIFPPYRYRSYAPNYTVPYGYGYGI---------GYGHGYG- 183
           Y G+  + PP      PPVI+PPY + +Y+P     YGY   +          Y   YG 
Sbjct: 125 YSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPE----YGYHQAVYNPQIQQAQYYHQLYGS 184

Query: 184 ----YGHGYGYGYDCSSSSPAPRAPFSSPSSAAAP---YVPYYMNQQGLF--YSP----- 236
                G  Y +GY    S  APR  FS+P +   P   Y+ Y    +G F  Y P     
Sbjct: 185 SSTSMGSPYYFGY----SLQAPRGTFSAPQAQRIPGPSYLYYPSQMEGSFSTYPPPPFHP 244

The following BLAST results are available for this feature:

BLAST of CmoCh12G001250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RB24A_XENLA	1.0e-21	55.42	RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1	[more]
RB24B_XENLA	1.0e-21	55.42	RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1	[more]
RBM38_MOUSE	1.8e-21	45.16	RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2	[more]
ARP1_ARATH	3.9e-21	38.68	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]
RBM24_HUMAN	3.3e-20	34.43	RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1	[more]

BLAST of CmoCh12G001250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLP2_CUCSA	9.3e-78	63.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368990 PE=4 SV=1	[more]
A0A067GMP3_CITSI	2.1e-45	50.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039503mg PE=4 SV=1	[more]
A0A0D2TUH0_GOSRA	6.1e-45	47.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1	[more]
V4TC42_9ROSI	5.1e-44	48.61	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002164mg PE=4 SV=1	[more]
A0A0D2V5B5_GOSRA	8.8e-44	47.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G039700 PE=4 SV=1	[more]

BLAST of CmoCh12G001250 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78260.1	2.0e-39	59.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.6e-36	44.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	1.1e-34	48.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	9.6e-34	41.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.3e-30	42.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh12G001250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778671668\|ref\|XP_004152633.2\|	1.3e-77	63.31	PREDICTED: RNA-binding protein 38-like [Cucumis sativus]	[more]
gi\|659088182\|ref\|XP_008444844.1\|	1.1e-76	62.96	PREDICTED: RNA-binding protein 38-like [Cucumis melo]	[more]
gi\|1009169788\|ref\|XP_015865854.1\|	1.8e-45	48.51	PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba]	[more]
gi\|641862316\|gb\|KDO81003.1\|	3.0e-45	50.41	hypothetical protein CISIN_1g039503mg [Citrus sinensis]	[more]
gi\|823227932\|ref\|XP_012446741.1\|	8.7e-45	47.08	PREDICTED: RNA-binding protein 38 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G001250.1	CmoCh12G001250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..78 score: 1.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..91 score: 6.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 18..95 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 17..100 score: 5.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 17..120 score: 1.07
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 14..209 score: 1.4
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 14..209 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G001250	Cucsa.160090	Cucumber (Gy14) v1	cgycmoB0449
CmoCh12G001250	CmaCh12G001620	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G001250	Cla022101	Watermelon (97103) v1	cmowmB135
CmoCh12G001250	Csa2G368990	Cucumber (Chinese Long) v2	cmocuB153
CmoCh12G001250	MELO3C011033	Melon (DHL92) v3.5.1	cmomeB154
CmoCh12G001250	ClCG08G011170	Watermelon (Charleston Gray)	cmowcgB162
CmoCh12G001250	CSPI02G21080	Wild cucumber (PI 183967)	cmocpiB154
CmoCh12G001250	Lsi04G022390	Bottle gourd (USVL1VR-Ls)	cmolsiB159
CmoCh12G001250	Lsi08G009710	Bottle gourd (USVL1VR-Ls)	cmolsiB176
CmoCh12G001250	Cp4.1LG11g04450	Cucurbita pepo (Zucchini)	cmocpeB148
CmoCh12G001250	Cp4.1LG07g01280	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G001250	MELO3C011033.2	Melon (DHL92) v3.6.1	cmomedB170
CmoCh12G001250	CsaV3_2G029740	Cucumber (Chinese Long) v3	cmocucB0180
CmoCh12G001250	CsaV3_3G047560	Cucumber (Chinese Long) v3	cmocucB0195
CmoCh12G001250	Cla97C08G154140	Watermelon (97103) v2	cmowmbB179
CmoCh12G001250	Cla97C11G220150	Watermelon (97103) v2	cmowmbB151
CmoCh12G001250	Bhi04G000951	Wax gourd	cmowgoB0194
CmoCh12G001250	CsGy3G042620	Cucumber (Gy14) v2	cgybcmoB274
CmoCh12G001250	CsGy2G020800	Cucumber (Gy14) v2	cgybcmoB163
CmoCh12G001250	Carg20536	Silver-seed gourd	carcmoB0893
CmoCh12G001250	Carg02975	Silver-seed gourd	carcmoB0868
CmoCh12G001250	Carg08193	Silver-seed gourd	carcmoB0080

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G001250	CmoCh09G005520	Cucurbita moschata (Rifu)	cmocmoB005
CmoCh12G001250	CmoCh01G016570	Cucurbita moschata (Rifu)	cmocmoB140
CmoCh12G001250	CmoCh05G005290	Cucurbita moschata (Rifu)	cmocmoB150

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G001250	Cucumber (Gy14) v2	cgybcmoB706
CmoCh12G001250	Cucumber (Gy14) v2	cgybcmoB700
CmoCh12G001250	Melon (DHL92) v3.6.1	cmomedB194
CmoCh12G001250	Silver-seed gourd	carcmoB0544
CmoCh12G001250	Cucumber (Chinese Long) v3	cmocucB0173
CmoCh12G001250	Cucumber (Chinese Long) v3	cmocucB0209
CmoCh12G001250	Watermelon (97103) v2	cmowmbB150
CmoCh12G001250	Wax gourd	cmowgoB0193
CmoCh12G001250	Cucurbita moschata (Rifu)	cmocmoB163
CmoCh12G001250	Cucumber (Gy14) v1	cgycmoB0218
CmoCh12G001250	Cucurbita maxima (Rimu)	cmacmoB765
CmoCh12G001250	Cucurbita maxima (Rimu)	cmacmoB844
CmoCh12G001250	Wild cucumber (PI 183967)	cmocpiB188
CmoCh12G001250	Cucumber (Chinese Long) v2	cmocuB184
CmoCh12G001250	Melon (DHL92) v3.5.1	cmomeB175
CmoCh12G001250	Watermelon (Charleston Gray)	cmowcgB143
CmoCh12G001250	Watermelon (97103) v1	cmowmB155
CmoCh12G001250	Bottle gourd (USVL1VR-Ls)	cmolsiB153
CmoCh12G001250	Bottle gourd (USVL1VR-Ls)	cmolsiB155