Csa3G889750 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G889750
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRNA-binding protein; contains IPR012677 (Nucleotide-binding, alpha-beta plait)
LocationChr3 : 37754604 .. 37757559 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAACAACAAGAAGAAGTAGAAACAGAAAGAGGAGGTTTGTTTTCTAGGGCGGCATATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTAAGTCTTCTCTCTCTCTATCTCTCTTTCTAACTCTCTCTCTCTCTCTCTCTTCCCTTTCTTAGACGTGATTTGTTTGAGTTATTACAGGTCACATTTCGTGACCCTGAATCTGCAAGAAGAGCTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGTTGCTCATTTACTTTAATTATTTACATATTTGTTATGAATATTGTTGGTTTGGTTTTGCTTTTCTTAATAAAAATTGTTTTGTATTTAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTACAATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACGGGTTAGTTCATTTTATTATTACTATTATTCATTTGTAAAACAATAAAAGTCTTATACATTGATTACCATTAAACTAAAATTACTTTAGTCAAAGTTTATTTAGAAGTAGGGTATTGAAAGTTGAAATTAAAAATCAAATATTGGGATTATTGATTGTATAAAGAGAAGATTATGTGAGTGTATGAATTGGGTGTATGATGAGAGAAACACATGGACTCATGTGGGACTTTCATGCAACCTTTTCCTTATCTTAATAATTATTATAAGTGCATATACATCATCAGTATAATTCTTGTTTCACCTCTTATTTATAATATACACACACATATAACTTTCTAAAGTAAATGGTAAATTTTCCATCACCGGAGAAATTTAATTTTCAGTGAAAGTGGTCCAATCCATCACTAGAAAATTTTCATTATTAACTTTGTTTGTTGGTTGTCATGAACGATAACATTAAAATGCTGTTGTTTTTCTGAACCCAGATAATATACAGCAGTTTTTCTTTTTTCGTAGACTTTGTTTATTCAAACACATTTGGAACGTTGAGTTTGTTAGTATAGAGATTAATTAGTGTTGATCTTAGTTAAAACAAGCTTAGAAAGAAACGAAAGAACAGTAGTGTGAGTTATTGATATTTCATTTCCTGAGGTTGTGAGGTTTGAATAAGAAAGTTTGAGTTGTTGTGAGTTATTGATTTTTGAGCTATTATCCTCAATGTGGTCATAATGAGTCAAAAACTGTAATCACTGTGATTTGTCAGCCAATTTTTTTTACCTGAACTACTGACAATGTAGAAAGAAACCAAACAGCTCCTCCCCCACCCACCAATCAACAAACCCAAAACCACTACACATCTGTACAACTGACCCACCAAACAGAAATCATGCACATACTTCAATATTATTTTACTAATCAATTTGGGTTTTGTTTTGTTTTGTTTTGTTTTGCAGATACCCAGCTTACAGTCCAGATTATGGGTACCACCACCACCATCAAGTTAGCCTCTTTTCTTTTCCTCTTATAAACATTTTTCATTGAGAACAGTTGGTGATGAGCATGAACCATATAACTTACAGAAAATGGTTGTATATATTTGAACAGGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTTATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCTCCCCCTCCTCCTCAATTTGAACCTTCTTCCTTCAATTATCCCCCTCAACCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGGTAACTTTATTATTCAAAATTCTTGAAATTATATATATATATATATATACCTGACAGGAATAGGATAAATAGAGATAAGTGGGGGAGAGGTAGGGGGCCATGTGGGTAAAGGGGAAGGGCATGTGAGTGAGCTGTCTTTGGGCCAACGAAAATGGTTGAAAGGAAATTGATGACAGAGTAGCATTTCCATTATATAAAGACAGCTACTGCCACTCTCACCTGCATTTCCATGTGTGTGCCTTCATTTCTCTTTTCCTAAACCCCCCTCCTATATTTTACTCTTTCTCTAAACTAACCCCCAACTTCTTTCTCTCTTTTCCTTTTCACTGTTTCTCTTATTTACCACTAGATTAACCCATGAAGTTTTCCACTTATCCCCTCATTATTCATAACATCCTATCCTATCATATGAATATTATGATTTTGGTAAAAAGGAAAAAAGGTTAATGATGTATTGAGTTTTGCCATTTTAGTAGAGTAGACCCAAATGTAATATAGATAGCTGTGCCCAGCTGTGTTTGAAAATGGACCACCTTCAAATTCCAAAATTTGCAAACCCATTTTTCTTTGCATTCCAAGTTAGGATTTTCCTTTTTCATTTTATTTATGAGATTGTTGATATTAAAAAAAGAAAGGAAAGGAAGAAGTGAATATTGATATTAATTGTGGGTTTCAGATTCACAGACATCACAACAAACTCCAACAGAAGCTGAAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGAGAATTAAATTAAAATAATTCAACAAATTTTAAATCAAACCCAATTCCAAATTATTATTATGGAGATAGAAAATTTGTATAAAGTTGATGGATTTGACATTTTATCTTTGAGATCGATCCTCCAATTCTTTTTTCTTTTCTTTCACCCATTT

mRNA sequence

ATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTCACATTTCGTGACCCTGAATCTGCAAGAAGAGCTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTACAATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACGGATACCCAGCTTACAGTCCAGATTATGGGTACCACCACCACCATCAAGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTTATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCTCCCCCTCCTCCTCAATTTGAACCTTCTTCCTTCAATTATCCCCCTCAACCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGATTCACAGACATCACAACAAACTCCAACAGAAGCTGAAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGA

Coding sequence (CDS)

ATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTCACATTTCGTGACCCTGAATCTGCAAGAAGAGCTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTACAATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACGGATACCCAGCTTACAGTCCAGATTATGGGTACCACCACCACCATCAAGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTTATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCTCCCCCTCCTCCTCAATTTGAACCTTCTTCCTTCAATTATCCCCCTCAACCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGATTCACAGACATCACAACAAACTCCAACAGAAGCTGAAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGA

Protein sequence

MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS*
Homology
[Close]
BLAST of Csa3G889750 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-31
Identity = 96/245 (39.18%), Postives = 123/245 (50.20%), Query Frame = 1 

Query: 11  FGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPES 70
           FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+D ++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 71  ARRACANPNPIIDGRRANCNIAAL-GRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGG- 130
           A RAC +  PII+GRRANCN+A+L GR R SP      +  +P QG     +ATP + G 
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSP------TMTSPQQGPKNGNRATPPHVGN 130

Query: 131 -----VPSPLNQPPIPPPPPPAPPVVYSPYGYPA--------YSPDYGY--HHHHQAVYN 190
                 PS             A P     YGYP+        ++   GY    +    Y 
Sbjct: 131 HSQWYYPSGFTNQQHQQQNHQAVPF----YGYPSAYVAPNMTFNQKVGYVGGTYMNGYYA 190

Query: 191 PQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQF-EPSS 238
               QPQ   Q  YY+ +   G      + S   P   + P +       P P F +P S
Sbjct: 191 QMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFPQPSFSKPLS 245

[Close]
BLAST of Csa3G889750 vs. Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27
Identity = 82/217 (37.79%), Postives = 106/217 (48.85%), Query Frame = 1 

Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTTFTK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T+KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 73  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQ--ATPSYGGVP 132
           RAC +PNPIIDGR+AN N+A LG  +P   +      V     + +Q     TP Y   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYIYPP 126

Query: 133 SPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPYYYG 192
           + +    + P P P+    Y  Y     +    Y H+  A Y    Q P        Y G
Sbjct: 127 TIVQPSMVIPTPIPSLQSPYIDYN----AATQAYTHYTTAAYE---QYPYAASPATGYMG 186

Query: 193 YSSRGTTFPNPSQSHQHPRLLLPP-SYVYYPPPPPPP 227
           Y      + +P Q         PP +Y+ Y P    P
Sbjct: 187 YG-----YTSPVQQPLSTTTGAPPTAYIQYQPQQLQP 210

[Close]
BLAST of Csa3G889750 vs. Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 5.7e-27
Identity = 80/180 (44.44%), Postives = 94/180 (52.22%), Query Frame = 1 

Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTTFTK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 73  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGGVPSP 132
           RAC +PNPIIDGR+AN N+A LG    S   G    ++   Q      Q T  YG  P  
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTG---FAIGVQQLHPTLIQRT--YGLTPHY 149

Query: 133 LNQPPIPPPP---PPAP-PVVYSPY-GYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPY 188
           +  P I  P    P AP P + SPY  Y   SP Y  +             P  Y Q PY
Sbjct: 150 IYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQY------------PPATYDQYPY 192

[Close]
BLAST of Csa3G889750 vs. Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 80/217 (36.87%), Postives = 103/217 (47.47%), Query Frame = 1 

Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTTFTK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 73  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQ--ATPSYGGVP 132
           RAC +PNPIIDGR+AN N+A LG  +P   +      V     + +Q     TP Y   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYIYPP 126

Query: 133 SPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPYYYG 192
           + +    + P P P+    Y  Y     +    + H+  A Y    Q P        Y G
Sbjct: 127 AIVQPSVVIPTPIPSLQSPYIDYN----AATQAFTHYTTAAYE---QYPYAASPATGYMG 186

Query: 193 YSSRGTTFPNPSQSHQHPRLLLPP-SYVYYPPPPPPP 227
           Y          S +        PP +Y+ Y P    P
Sbjct: 187 YGYTSAVQQPLSATTTTATTGAPPTAYIQYQPQQLQP 215

[Close]
BLAST of Csa3G889750 vs. Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 79/180 (43.89%), Postives = 92/180 (51.11%), Query Frame = 1 

Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTTFTK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 73  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGGVPSP 132
           RAC +PNPIIDGR+AN N+A LG    S   G    +V   Q      Q T  YG  P  
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTG---FAVGVQQLHPTLIQRT--YGLTPHY 147

Query: 133 LNQPPIPPP----PPPAPPVVYSPY-GYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPY 188
           +  P I  P    P    P + SPY  Y   SP Y  +             P  Y Q PY
Sbjct: 148 IYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQY------------PPATYDQYPY 190

[Close]
BLAST of Csa3G889750 vs. TrEMBL
Match: A0A0A0LGV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 598.6 bits (1542), Expect = 3.9e-168
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1 

Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY
Sbjct: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA
Sbjct: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120

Query: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180
           QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ
Sbjct: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180

Query: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 240
           MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ
Sbjct: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 240

Query: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
           PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS
Sbjct: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]
BLAST of Csa3G889750 vs. TrEMBL
Match: W9R7P9_9ROSA (RNA-binding protein 24 OS=Morus notabilis GN=L484_012724 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.6e-89
Identity = 176/264 (66.67%), Postives = 192/264 (72.73%), Query Frame = 1 

Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           MANYPHYRSQFGDTTFTKVFVGGLAWETPTD+M++YFEQFGDILEAVIITDKNT KSKGY
Sbjct: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRSYFEQFGDILEAVIITDKNTGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFRDPESARRACANPNP+IDGRRANCNIA+LGRPRPSPPRGR Q   +P+QG + Q 
Sbjct: 61  GFVTFRDPESARRACANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPFQGGSPQG 120

Query: 121 QATPSY-GGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSP-DYGYHHHHQAVYNPQVQQ 180
            A PSY G VP+PL     PPPPPP PPV+Y PY YP Y+P DYGY   HQA+YNPQVQQ
Sbjct: 121 HAVPSYSGSVPAPL-----PPPPPPPPPVIYQPYAYPTYTPADYGY---HQAMYNPQVQQ 180

Query: 181 PQMY------------QQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPP 240
           P  Y              TPYYYGYS +    P  S   Q  R+  PPSY+YY  P PP 
Sbjct: 181 PAQYYHQLYGTASSSTMNTPYYYGYSLQSPRGPF-STVPQPQRIAGPPSYLYY--PNPPH 240

Query: 241 QFEPSSFNYPPQPQPQIIRHRFSS 251
             E S  +YP   QP   RH F S
Sbjct: 241 HLEGSFSSYP--FQPTTTRHPFPS 250

[Close]
BLAST of Csa3G889750 vs. TrEMBL
Match: E0CRL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05840 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.1e-88
Identity = 183/294 (62.24%), Postives = 206/294 (70.07%), Query Frame = 1 

Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           Y HYRS FGDTTFTKVFVGGLAWETPTD M+ +FEQFG+ILEAVIITDKNT KSKGYGFV
Sbjct: 3   YQHYRSPFGDTTFTKVFVGGLAWETPTDVMRRHFEQFGEILEAVIITDKNTGKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESARRAC +PNP+IDGRRANCNIA+LGRPRPSPPRGR Q   NPY      +Q  
Sbjct: 63  TFRDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-NPYHAGA--SQGA 122

Query: 124 PSYGGVPSPL-NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMY 183
            S+ GVP+PL   PP PPPPPP PPV+Y PYGY  Y+PDYGY  H Q++YNPQ+QQP  +
Sbjct: 123 SSFSGVPAPLAPPPPPPPPPPPPPPVIYPPYGYATYTPDYGY--HQQSLYNPQLQQPYYH 182

Query: 184 Q---------QTPYYYGYS---SRGTTFPNPSQSH--QHPRLLLPP-----SYVYYPPPP 243
           Q          +PYYYGYS   SRG TF  P Q+H  Q P  L  P     S+  YPPPP
Sbjct: 183 QLYGASSSTVASPYYYGYSLQASRG-TFSGP-QAHRVQGPSYLYYPTQMEGSFPTYPPPP 242

Query: 244 PPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
            PP  +P+S   PP P         SSTDSQT QQ+ TE EAG   S  +SPT+
Sbjct: 243 VPPTLQPTS--RPPFP---------SSTDSQTVQQSSTETEAG--VSHSESPTT 276

[Close]
BLAST of Csa3G889750 vs. TrEMBL
Match: A0A067LBA1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15801 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.4e-88
Identity = 180/296 (60.81%), Postives = 202/296 (68.24%), Query Frame = 1 

Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT KSKGYGFV
Sbjct: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGR---GQSSVNPYQGSTMQA 123
           TFRDPESARRACA+PNP+IDGRRANCNIA+LGRPRPSPPRGR   G +S N YQGS    
Sbjct: 63  TFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRPQGGSTSTNQYQGS---- 122

Query: 124 QATPSYGGVPSPLNQPPIPP--PPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQ 183
               SY GV +PL   P PP  PPPP PPV+Y  YGYPAY+PDYGY   HQA+YNPQVQQ
Sbjct: 123 ---QSYSGVATPLPPTPQPPPLPPPPPPPVIYPHYGYPAYTPDYGY---HQAIYNPQVQQ 182

Query: 184 PQMYQQ------------TPYYY-GYSSRGTTFPNPSQSHQHPRLLLPPSYVYYP----- 243
           PQ Y Q            +PYYY GY+ +       +   Q      PPSY YYP     
Sbjct: 183 PQYYHQLYGSSSSSSTMGSPYYYHGYTLQPLRGALSAPQPQRLPATGPPSYFYYPSNTLE 242

Query: 244 PPPPPPQFEPSSFNYPPQPQPQIIRHRFSSTDS-QTSQQTPTEAEAGGVTSDIQSP 276
           P PPPP F+ +  +  P           SSTDS QT Q + TE EAG VTS+  +P
Sbjct: 243 PYPPPPNFQSTRHSLVP-----------SSTDSPQTPQNSTTETEAGVVTSESTNP 277

[Close]
BLAST of Csa3G889750 vs. TrEMBL
Match: V7B5W5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G174100g PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.6e-87
Identity = 176/293 (60.07%), Postives = 198/293 (67.58%), Query Frame = 1 

Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT KSKGYGFV
Sbjct: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESARRACA+PNP+IDGRRANCNIA+LGRPRPSPPRGRG      +QG    A  T
Sbjct: 63  TFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRG-----TFQGG---APGT 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
            SY GVP+       PPPPPP PP+VY PYGYP Y+PDYGY  H   +YNPQ+QQPQ YQ
Sbjct: 123 ASYSGVPAAGPSALAPPPPPPPPPLVYPPYGYPTYTPDYGY--HQATLYNPQIQQPQYYQ 182

Query: 184 Q----------TPYYYGYSSRGT--TFPNPSQSHQHPRLLLPPSYVYYPPP--------P 243
           Q          +PYYYGYS +    TF  P Q H+ P     PSY+YYP P         
Sbjct: 183 QLYGPSSSTMASPYYYGYSVQAPRGTFSTP-QPHRIP---AGPSYLYYPTPMEGSFSAYR 242

Query: 244 PPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPT 277
           PPPQ +      PP P P         +DSQT Q+T +EA  G V +   S T
Sbjct: 243 PPPQLQQLPIRQPP-PSP---------SDSQTQQRTSSEAAGGVVITSESSNT 271

[Close]
BLAST of Csa3G889750 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 244.6 bits (623), Expect = 7.3e-65
Identity = 149/296 (50.34%), Postives = 177/296 (59.80%), Query Frame = 1 

Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           M+   +YRS FGDTT+TKVFVGGLAWETPTD+M+ YFEQFG+ILEAVIITDKNT KSKGY
Sbjct: 1   MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFR+ +SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+      GS  Q 
Sbjct: 61  GFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT------GSPSQY 120

Query: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGYHHHHQAVYNPQVQQP 180
           Q+     G PS       P PP  AP ++Y  YGY  Y+PD +GY   HQA+YN Q+QQ 
Sbjct: 121 QS-----GGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY---HQALYNTQLQQA 180

Query: 181 QMYQQTPYYYG------YSSRGTTFPNP---SQSHQHPRLLLPPSYVYYPPPPPPPQ--- 240
           Q YQQ    YG       SS  T  P+P     S Q PR  +P  + ++ P P  PQ   
Sbjct: 181 QYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPR--VPYQHHHHLPQPYNPQQHH 240

Query: 241 ----FEPSSFNYPPQPQ--PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
                 PS   YP      P +     SST+S+   Q    AE    T+  +  TS
Sbjct: 241 HQRFSSPSFLVYPSNSSFAPPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEITTS 279

[Close]
BLAST of Csa3G889750 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 232.6 bits (592), Expect = 2.9e-61
Identity = 134/277 (48.38%), Postives = 163/277 (58.84%), Query Frame = 1 

Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           M+N  +YRS FGDTT TKVFVGGLAWETPTD+M+ YF+QFG+ILEAVIITDK T KSKGY
Sbjct: 1   MSNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQ-SSVNPYQGSTMQ 120
           GFVTFRD +SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQ  S + YQG    
Sbjct: 61  GFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG--- 120

Query: 121 AQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQP 180
                SY G+ +P+ Q         A  ++Y  YGY  Y+ +YGY   HQA+YN Q+QQ 
Sbjct: 121 --GQSSYTGMAAPVQQ-------AAAAQLMYPSYGY-TYNSEYGY---HQALYNAQLQQA 180

Query: 181 QMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQP 240
           Q YQQ  Y  G    G T P+ S        ++P  Y Y   P P P             
Sbjct: 181 QYYQQQMYGGG----GATSPSSSN-------IMPSPYYYLQAPSPRPYL---------HH 240

Query: 241 QPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPT 277
           Q     H       Q  Q+ P+ +      S++++PT
Sbjct: 241 QQHYQYHHHQQQQQQQQQRLPSASSYLIYPSNVEAPT 241

[Close]
BLAST of Csa3G889750 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-46
Identity = 123/279 (44.09%), Postives = 146/279 (52.33%), Query Frame = 1 

Query: 6   HY-RSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVT 65
           HY  S FGDTTFTKVFVGGLAWET ++ ++ +FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 66  FRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATP 125
           FRDPE+ARRACA+P PIIDGRRANCN+A+LGRPRP  P      +V P     ++  A+P
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP-----YAVIPNMPGRLR-PASP 131

Query: 126 SYGGVPSPL-----NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQ- 185
             G V  P      N P   P P      V  PYG  AY P+Y Y    Q +Y+P + Q 
Sbjct: 132 YIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMY-SQSQGLYSPYMGQQ 191

Query: 186 -------PQMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPS 245
                  P       Y YG  S+  T PN           +P S++     P       S
Sbjct: 192 YLQVYGVPGAVNSPVYQYGQLSQ--TIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTS 251

Query: 246 SF-----NYP---PQPQP---QIIRHRFSSTDSQTSQQT 260
           S       YP   P P P    II H      S  S QT
Sbjct: 252 SMPALQAPYPSGIPGPAPVQSHIIVHSPQFMQSTASDQT 281

[Close]
BLAST of Csa3G889750 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-45
Identity = 114/258 (44.19%), Postives = 135/258 (52.33%), Query Frame = 1 

Query: 6   HY-RSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVT 65
           HY  S FGDTTFTKVFVGGLAWET ++ ++ +F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 66  FRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATP 125
           FRDPE+ARRAC +P PIIDGRRANCN+A+LGR RP       Q +V P+    ++   +P
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPM-----QYAVIPHAPGRVR-PPSP 131

Query: 126 SYGGVPSPL-----NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQ- 185
             G V SP      + P   PP       V  PYG   Y PDY Y    Q  Y P + Q 
Sbjct: 132 YVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY-SQSQGFYGPYMGQQ 191

Query: 186 -------PQMYQQTPYYYGYSSR---GTTFPNPSQSHQHP-------RLLLPPSYVYYP- 239
                  P       Y YG  S    G       Q + HP           P S +  P 
Sbjct: 192 YLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPY 251

[Close]
BLAST of Csa3G889750 vs. TAIR10
Match: AT2G46780.1 (AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-39
Identity = 102/263 (38.78%), Postives = 131/263 (49.81%), Query Frame = 1 

Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DT  TK+FVGGLAWET  D M+ YFEQFG+I+EAV+ITDKNT +SKGYGFVTF++ E+A 
Sbjct: 18  DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77

Query: 73  RACANPNPIIDGRRANCNIAALGRPRPSPP----RGRGQSSVNPYQGSTMQAQATPSYGG 132
           RAC N NP+IDGRRANCN+A LG  +P PP     G G+   +P  G  + A +    G 
Sbjct: 78  RACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFR-SPGSGVGLVAPSPQFRGS 137

Query: 133 VPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD----YGYHHHHQAVYNPQVQQPQMYQQ 192
             S               P  YS YG+  YS +      Y++HH  +Y  Q   P     
Sbjct: 138 SSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHH--LYGGQQFSP----- 197

Query: 193 TPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQPQII 252
              Y G+ S G+T         +P+     S             +  SF Y   P P ++
Sbjct: 198 ---YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQHHQGFSFQYTAPPAPPLL 257

Query: 253 RH-------RFSSTDSQTSQQTP 261
           ++        FSS    +SQQ P
Sbjct: 258 QYPYLPHQPHFSSQQQFSSQQPP 269

[Close]
BLAST of Csa3G889750 vs. NCBI nr
Match: gi|449437302|ref|XP_004136431.1| (PREDICTED: RNA-binding protein 38 [Cucumis sativus])

HSP 1 Score: 598.6 bits (1542), Expect = 5.6e-168
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1 

Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY
Sbjct: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA
Sbjct: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120

Query: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180
           QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ
Sbjct: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180

Query: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 240
           MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ
Sbjct: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 240

Query: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
           PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS
Sbjct: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]
BLAST of Csa3G889750 vs. NCBI nr
Match: gi|703106893|ref|XP_010098613.1| (RNA-binding protein 24 [Morus notabilis])

HSP 1 Score: 337.4 bits (864), Expect = 2.3e-89
Identity = 176/264 (66.67%), Postives = 192/264 (72.73%), Query Frame = 1 

Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           MANYPHYRSQFGDTTFTKVFVGGLAWETPTD+M++YFEQFGDILEAVIITDKNT KSKGY
Sbjct: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRSYFEQFGDILEAVIITDKNTGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFRDPESARRACANPNP+IDGRRANCNIA+LGRPRPSPPRGR Q   +P+QG + Q 
Sbjct: 61  GFVTFRDPESARRACANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPFQGGSPQG 120

Query: 121 QATPSY-GGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSP-DYGYHHHHQAVYNPQVQQ 180
            A PSY G VP+PL     PPPPPP PPV+Y PY YP Y+P DYGY   HQA+YNPQVQQ
Sbjct: 121 HAVPSYSGSVPAPL-----PPPPPPPPPVIYQPYAYPTYTPADYGY---HQAMYNPQVQQ 180

Query: 181 PQMY------------QQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPP 240
           P  Y              TPYYYGYS +    P  S   Q  R+  PPSY+YY  P PP 
Sbjct: 181 PAQYYHQLYGTASSSTMNTPYYYGYSLQSPRGPF-STVPQPQRIAGPPSYLYY--PNPPH 240

Query: 241 QFEPSSFNYPPQPQPQIIRHRFSS 251
             E S  +YP   QP   RH F S
Sbjct: 241 HLEGSFSSYP--FQPTTTRHPFPS 250

[Close]
BLAST of Csa3G889750 vs. NCBI nr
Match: gi|359492447|ref|XP_003634414.1| (PREDICTED: RNA-binding protein 38 isoform X1 [Vitis vinifera])

HSP 1 Score: 334.7 bits (857), Expect = 1.5e-88
Identity = 183/294 (62.24%), Postives = 206/294 (70.07%), Query Frame = 1 

Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           Y HYRS FGDTTFTKVFVGGLAWETPTD M+ +FEQFG+ILEAVIITDKNT KSKGYGFV
Sbjct: 3   YQHYRSPFGDTTFTKVFVGGLAWETPTDVMRRHFEQFGEILEAVIITDKNTGKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESARRAC +PNP+IDGRRANCNIA+LGRPRPSPPRGR Q   NPY      +Q  
Sbjct: 63  TFRDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-NPYHAGA--SQGA 122

Query: 124 PSYGGVPSPL-NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMY 183
            S+ GVP+PL   PP PPPPPP PPV+Y PYGY  Y+PDYGY  H Q++YNPQ+QQP  +
Sbjct: 123 SSFSGVPAPLAPPPPPPPPPPPPPPVIYPPYGYATYTPDYGY--HQQSLYNPQLQQPYYH 182

Query: 184 Q---------QTPYYYGYS---SRGTTFPNPSQSH--QHPRLLLPP-----SYVYYPPPP 243
           Q          +PYYYGYS   SRG TF  P Q+H  Q P  L  P     S+  YPPPP
Sbjct: 183 QLYGASSSTVASPYYYGYSLQASRG-TFSGP-QAHRVQGPSYLYYPTQMEGSFPTYPPPP 242

Query: 244 PPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
            PP  +P+S   PP P         SSTDSQT QQ+ TE EAG   S  +SPT+
Sbjct: 243 VPPTLQPTS--RPPFP---------SSTDSQTVQQSSTETEAG--VSHSESPTT 276

[Close]
BLAST of Csa3G889750 vs. NCBI nr
Match: gi|731428428|ref|XP_010664338.1| (PREDICTED: RNA-binding protein 38 isoform X2 [Vitis vinifera])

HSP 1 Score: 334.3 bits (856), Expect = 2.0e-88
Identity = 183/294 (62.24%), Postives = 206/294 (70.07%), Query Frame = 1 

Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           Y HYRS FGDTTFTKVFVGGLAWETPTD M+ +FEQFG+ILEAVIITDKNT KSKGYGFV
Sbjct: 3   YQHYRSPFGDTTFTKVFVGGLAWETPTDVMRRHFEQFGEILEAVIITDKNTGKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESARRAC +PNP+IDGRRANCNIA+LGRPRPSPPRGR Q   NPY      +Q  
Sbjct: 63  TFRDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-NPYHAGA--SQGA 122

Query: 124 PSYGGVPSPL-NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMY 183
            S+ GVP+PL   PP PPPPPP PPV+Y PYGY  Y+PDYGY   HQ++YNPQ+QQP  +
Sbjct: 123 SSFSGVPAPLAPPPPPPPPPPPPPPVIYPPYGYATYTPDYGY---HQSLYNPQLQQPYYH 182

Query: 184 Q---------QTPYYYGYS---SRGTTFPNPSQSH--QHPRLLLPP-----SYVYYPPPP 243
           Q          +PYYYGYS   SRG TF  P Q+H  Q P  L  P     S+  YPPPP
Sbjct: 183 QLYGASSSTVASPYYYGYSLQASRG-TFSGP-QAHRVQGPSYLYYPTQMEGSFPTYPPPP 242

Query: 244 PPPQFEPSSFNYPPQPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
            PP  +P+S   PP P         SSTDSQT QQ+ TE EAG   S  +SPT+
Sbjct: 243 VPPTLQPTS--RPPFP---------SSTDSQTVQQSSTETEAG--VSHSESPTT 275

[Close]
BLAST of Csa3G889750 vs. NCBI nr
Match: gi|950983521|ref|XP_014502801.1| (PREDICTED: RNA-binding protein 38-like [Vigna radiata var. radiata])

HSP 1 Score: 334.0 bits (855), Expect = 2.6e-88
Identity = 179/288 (62.15%), Postives = 200/288 (69.44%), Query Frame = 1 

Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT KSKGYGFV
Sbjct: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESARRACA+PNP+IDGRRANCNIA+LGRPRPSPPRGRG      +QG    A  T
Sbjct: 63  TFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRG-----TFQGG---APGT 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
            SY GVP        PPPPPP PP+VY PYGYP Y+PDYGY  H   +YNPQ+QQPQ YQ
Sbjct: 123 ASYSGVPGAGAPALAPPPPPPPPPLVYPPYGYPTYTPDYGY--HQATLYNPQIQQPQYYQ 182

Query: 184 Q----------TPYYYGYSSRG--TTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPS 243
           Q          +PYYYGYS +   TTF  P Q H+ P     PSY+YYP P      EPS
Sbjct: 183 QLYGPSSSTMGSPYYYGYSVQAPRTTFSTP-QPHRIP---AGPSYLYYPTP-----MEPS 242

Query: 244 SFNYPPQPQPQIIRHRF---SSTDSQTSQQTPTEAEAGGVTSDIQSPT 277
              Y P PQ Q +  R    S +DSQT Q+T +EA  G V +   S T
Sbjct: 243 FSAYRPPPQLQQLPIRQPPPSPSDSQTQQRTTSEAAGGVVITSESSNT 271

The following BLAST results are available for this feature:
BLAST of Csa3G889750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARP1_ARATH1.0e-3139.18Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1[more]
RBM38_XENLA1.1e-2737.79RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2[more]
RBM38_HUMAN5.7e-2744.44RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2[more]
RBM38_XENTR1.6e-2636.87RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1[more]
RBM38_MOUSE1.6e-2643.89RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2[more]
BLAST of Csa3G889750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGV2_CUCSA3.9e-168100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1[more]
W9R7P9_9ROSA1.6e-8966.67RNA-binding protein 24 OS=Morus notabilis GN=L484_012724 PE=4 SV=1[more]
E0CRL7_VITVI1.1e-8862.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05840 PE=4 SV=... [more]
A0A067LBA1_JATCU2.4e-8860.81Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15801 PE=4 SV=1[more]
V7B5W5_PHAVU2.6e-8760.07Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G174100g PE=4 SV=1[more]
BLAST of Csa3G889750 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G78260.17.3e-6550.34 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G22330.12.9e-6148.38 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G76460.12.0e-4644.09 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G20880.12.9e-4544.19 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46780.12.4e-3938.78 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Csa3G889750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437302|ref|XP_004136431.1|5.6e-168100.00PREDICTED: RNA-binding protein 38 [Cucumis sativus][more]
gi|703106893|ref|XP_010098613.1|2.3e-8966.67RNA-binding protein 24 [Morus notabilis][more]
gi|359492447|ref|XP_003634414.1|1.5e-8862.24PREDICTED: RNA-binding protein 38 isoform X1 [Vitis vinifera][more]
gi|731428428|ref|XP_010664338.1|2.0e-8862.24PREDICTED: RNA-binding protein 38 isoform X2 [Vitis vinifera][more]
gi|950983521|ref|XP_014502801.1|2.6e-8862.15PREDICTED: RNA-binding protein 38-like [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU161612cucumber EST collection version 3.0transcribed_cluster
CU163519cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G889750.1Csa3G889750.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161612CU161612transcribed_cluster
CU163519CU163519transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 19..77
score: 1.9
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 18..90
score: 1.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 17..94
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 11..100
score: 1.5
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 10..116
score: 1.01
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 13..99
score: 3.5E-40coord: 138..220
score: 3.5E-40coord: 239..252
score: 3.5
NoneNo IPR availablePANTHERPTHR24012:SF421SUBFAMILY NOT NAMEDcoord: 13..99
score: 3.5E-40coord: 138..220
score: 3.5E-40coord: 239..252
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G889750Cla023017Watermelon (97103) v1cuwmB271
Csa3G889750Cla022101Watermelon (97103) v1cuwmB208
Csa3G889750MELO3C011032Melon (DHL92) v3.5.1cumeB205
Csa3G889750ClCG11G014170Watermelon (Charleston Gray)cuwcgB199
Csa3G889750ClCG08G011170Watermelon (Charleston Gray)cuwcgB260
Csa3G889750Lsi08G009710Bottle gourd (USVL1VR-Ls)culsiB238
Csa3G889750Lsi04G022390Bottle gourd (USVL1VR-Ls)culsiB191
Csa3G889750MELO3C003568.2Melon (DHL92) v3.6.1cumedB208
Csa3G889750MELO3C011033.2Melon (DHL92) v3.6.1cumedB191
Csa3G889750Cla97C11G220150Watermelon (97103) v2cuwmbB191
Csa3G889750Cla97C08G154140Watermelon (97103) v2cuwmbB246
Csa3G889750Bhi09G002069Wax gourdcuwgoB340
Csa3G889750CSPI03G45130Wild cucumber (PI 183967)cpicuB120
Csa3G889750CSPI02G21080Wild cucumber (PI 183967)cpicuB071
Csa3G889750Cucsa.160090Cucumber (Gy14) v1cgycuB236
Csa3G889750Cucsa.311530Cucumber (Gy14) v1cgycuB450
Csa3G889750CmaCh09G005630Cucurbita maxima (Rimu)cmacuB014
Csa3G889750CmaCh12G001620Cucurbita maxima (Rimu)cmacuB180
Csa3G889750CmaCh01G016110Cucurbita maxima (Rimu)cmacuB445
Csa3G889750CmoCh05G005290Cucurbita moschata (Rifu)cmocuB789
Csa3G889750CmoCh01G016570Cucurbita moschata (Rifu)cmocuB432
Csa3G889750CmoCh09G005520Cucurbita moschata (Rifu)cmocuB005
Csa3G889750Cp4.1LG06g04390Cucurbita pepo (Zucchini)cpecuB776
Csa3G889750Cp4.1LG02g05060Cucurbita pepo (Zucchini)cpecuB557
Csa3G889750CsGy2G020800Cucumber (Gy14) v2cgybcuB067
Csa3G889750CsGy3G042620Cucumber (Gy14) v2cgybcuB110
Csa3G889750Carg02975Silver-seed gourdcarcuB0655
Csa3G889750Carg08193Silver-seed gourdcarcuB0061
Csa3G889750Carg25633Silver-seed gourdcarcuB1023
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa3G889750Csa2G368990Cucumber (Chinese Long) v2cucuB052
The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G889750Wax gourdcuwgoB315
Csa3G889750Cucurbita maxima (Rimu)cmacuB796
Csa3G889750Melon (DHL92) v3.5.1cumeB222
Csa3G889750Cucurbita pepo (Zucchini)cpecuB111