CmaCh09G005630.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh09G005630.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding protein 24
Location	Cma_Chr09 : 2554907 .. 2557992 (+)
Sequence length	1075

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACCATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTGACTAAAGTGTTTGTTGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATAACGGATAAGAACACCTCCAAATCCAAAGGATACGGTTTTGTAAGTTAGCCTTGTAATTATTTAAGTTTTGGAGTTCCGTGGTGATTTAAATCATTATTCAGGTAACGTTTCGAGATGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGTCGGTATTATAGTTCATCTCTATCGTTTTTACCACGATTGTTGTTTATTCAAATTTTTGTTTTGCTATTCAGGACGAGGGCAGGGTGGCGTAAATCCCTATCAAGGAAGTACAATGCAAGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCCCCTGTTGTTTATTCACCATACGGGTTAGTCAAGTTATTATCGAATTAGAAATTTGGGTAGAAATCATGAAGATTAAATTGAAATTAAGGGTTAAACTAAATCAAATATGCGATTATTGATCCGTTAAACAAAAGATTAAACGGGTTTAGAAATTGGGTATGAATGGAAACATATGGACCCACGTCTGCATATCTCTATAATATTATGATACTATTCACTTTAAACAAAAACGCTCGAAATATACTCAATTATAAGTTATGTATCGCTCGGTTTTCTACGTGGGTCTAGATTAGTCTACGGTTTCATTTGAAAAGAAAGAAAGGGTAGTCGGGTCAAAATCATTTTTGTGAGATCCCACGTCGATTAAAGAGAAGAACGAAACAAATCTGTCACTAGTAGACGTGTTTTAAATTTTTTTTTTAAAGGGTATGAAAATATCTGCTAACGGTGGATTTAGACTGTTAGAGTGGAGCCAACGAGCTCCGCCCCACCGACCAATCGACAAACCCAAAACCAATACAACTGTAACACCAACCAATGTGTTTACAACTGTCCCAAAGTCCCATTTGAGCTAAGGTTCTTCATAAAAAGAATAGAAATTCTACAACAATATTTTCCACTAAGCAATTAATTCCCATCCCAACCCACTTGGTTCTTTTTCTTGGCTTTGCAGATACCCAACATACACTCCTGATTATGGCTACCACCAGCACTACCAGCACCACCAAGTGAGCCAGCCTCCATTTCTCTTAAAATTATGCATTATTTTTCATTGCGGCATTTACTCAAACACTTGGCGTGCATGCGCATGAAAAGTCACCATAAACCCTAACTAACTTATAAAAAGCATTGAATTTTAGCAACCAGTGTACAACCCATATTTCTATGGCTATTCCGTACAATCCCCCAGAGGAGCATTTCCCATTCCTTCGCAGTCGCATCAGCCCCGTGTAGCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCTCAGTATGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGGTACGAATTTCTATCTCTTTTTATAATTTTTGGAATTATATATGAACAATAAAAAAGACATCTGACAGGAACAGACAAACAGATAAATAGATTATTATTATTATTAATATAAGGTAAAAAAAGAAAGAAATAAAAATGGGGGCCATGTGGGTAAAGAGCTAAAGCCATGTGAGTGAGCTGTCTGGGCCAATGCAATTGTTGAAAGGAAATTGATGACAGAGTAGCATTTCATTATATAGACAGCTACTGCATTCCCCATGTGTGGTTCAGTTTCCAACCTATTACTATTCTCAACCCCTTTCTCCTGGTATCCCGTCTCGATGTGATTGATAGTTTTGTATTTAGATGATTCTTAGAGGTCACCCGAATCGACCCCTCTTAGCCAATGTTCGAATTGGCTGATCATAAACTTAGCATATCTCTAGTAGACTAACGCCGATATGTAACGAGTCAAAACAGACAATATCTATTACAAATGGTATCAGGGTCGACACTGGAGGACAATGTGTCACCGAGAACGTTGGCCTCTAAAAACGTGTATTGTGAGATCCCATATCAATTGGGAAACAAAGCATTTCTTATAACGGACGGCTAACATACAGGCCAAAATGAACAATAATATTACTAACAAAGAGATAGAGTTATTACAGTAACAATGAGCTGTGTCCAGTTGTCTTTTAAAATGGACCACTTCCAAATTCCAAGCTTCCAACCTTTTCTTTTTGGGTCTCATTTAGAGATAGCACGAGTTAGGTTGTAAAAAATTTTAAAAATCTCATTTTGGAGCGTATACGGGTTTATAGTTGTAATTTTTTCCGACTAACCCGAAATTTGAGATTGGTTGGTCAGCTAGTCTCGACCTGACATAGTTCACAACCCAATAAAAAACACTCAGCTTTCTATTTTAGTTGGTCGGGTTGATCTAACAAAAAAAAAAAAAAAAAAAAAAAACTCCGACCCACAAACTATACCTACAAAAATATAACCTAATCCTTAATTTTTATAATTTTAGTTGAGTAGTTCGAGTTTTATCATTAATAAATTACAATAATTAAATTAGGTTTATATTAATATGTATTAATGATGGGTTTCAGATTCACAGACATCTCAGCAAACTCCTACCGAAGCTGAAGCTGAAGCTGTTACCTCTGAAACTTCAACCACCTGAAAGAAGAATTCATAAAAATCAAACCAAACCAAACCGAACCGAACTGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCAAAAAAAGGAAGAAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTCGATCGATTTGACCGTCTTTTTCACCCATTTTTTCCTTTTTTTTTTTAATTATTATTATTTATTCCATTTTAATTTTGATGGATTTTTTTCATTGTACTCGAGTTAGGATTTTAATTTTTGTTATAATTTAACGTGTAAGAGTAGAGATTCGAACA

mRNA sequence

CGACCATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTGACTAAAGTGTTTGTTGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATAACGGATAAGAACACCTCCAAATCCAAAGGATACGGTTTTGTAACGTTTCGAGATGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAATCCCTATCAAGGAAGTACAATGCAAGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCCCCTGTTGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCCGTACAATCCCCCAGAGGAGCATTTCCCATTCCTTCGCAGTCGCATCAGCCCCGTGTAGCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCTCAGTATGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTACCGAAGCTGAAGCTGAAGCTGTTACCTCTGAAACTTCAACCACCTGAAAGAAGAATTCATAAAAATCAAACCAAACCAAACCGAACCGAACTGAATTATTGGTTCAATTTCTCATGAAAAAAAAAACCCAAAAAAAGGAAGAAAAAAAAAGGTGGAGATAGAAAATTGTATAAAGTTGACTACTCGATCGATTTGACCGTCTTTTTCACCCATTTTTTCCTTTTTTTTTTTAATTATTATTATTTATTCCATTTTAATTTTGATGGATTTTTTTCATTGTACTCGAGTTAGGATTTTAATTTTTGTTATAATTTAACGTGTAAGAGTAGAGATTCGAACA

Coding sequence (CDS)

ATGGCGTACCCACATTACCGATCCCAATTCGGAGATACCACTTTGACTAAAGTGTTTGTTGGTGGGCTAGCTTGGGAGACGCCCACCGACGAAATGAGGAGATATTTTGAGCAATTTGGCGACATTCTTGAAGCTGTGATTATAACGGATAAGAACACCTCCAAATCCAAAGGATACGGTTTTGTAACGTTTCGAGATGCTGAATCTGCGAGAAGGGCTTGTGCTAATCCAAACCCGATGATCGATGGGAGACGAGCTAATTGTAACATTGCTGCAATGGGTCGGCCTCGGCCTTCACCTCCACGAGGACGAGGGCAGGGTGGCGTAAATCCCTATCAAGGAAGTACAATGCAAGCAGCACCATCTTATAGCGGAGTCCCGCCGCCGTTAAACCAGCCACCGCTTCCTCCGCCGCCCCCTGTTGTTTATTCACCATACGGATACCCAACATACACTCCTGATTATGGCTACCACCAGCACTACCAGCACCACCAACAACCAGTGTACAACCCATATTTCTATGGCTATTCCGTACAATCCCCCAGAGGAGCATTTCCCATTCCTTCGCAGTCGCATCAGCCCCGTGTAGCAGTTCCTCCTTATGTGTACTATCCTCCTCCCGCCGCCGCCGCTCAGTATGAAGGCTCCTTCAGCTATCCTCCTCCTCCTCCTCCTCTGATACGACACCGTTTTGCCTCCACAGATTCACAGACATCTCAGCAAACTCCTACCGAAGCTGAAGCTGAAGCTGTTACCTCTGAAACTTCAACCACCTGA

Protein sequence

MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSETSTT

Homology

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BLAST of CmaCh09G005630.1 vs. Swiss-Prot
Match: ARP1_ARATH (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.9e-25
Identity = 79/168 (47.02%), Postives = 101/168 (60.12%), Query Frame = 1


Query: 10  FGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAES 69
           FGDT LTKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+DA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 70  ARRACANPNPMIDGRRANCNIAAM-GRPRPSPPRGRGQGGVNPYQGSTMQAAPSYSGVPP 129
           A RAC +  P+I+GRRANCN+A++ GR R SP         +P QG              
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTM------TSPQQG-------------- 130

Query: 130 PLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPYFYGY 177
           P N     PP    +S + YP+    +   QH Q + Q V    FYGY
Sbjct: 131 PKNGNRATPPHVGNHSQWYYPS---GFTNQQHQQQNHQAV---PFYGY 152

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BLAST of CmaCh09G005630.1 vs. Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

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BLAST of CmaCh09G005630.1 vs. Swiss-Prot
Match: RBM24_MOUSE (RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-24
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

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BLAST of CmaCh09G005630.1 vs. Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.1e-24
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMG-RPRPSPP 102
           RAC +PNP+IDGR+AN N+A +G +PR   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQP 97

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BLAST of CmaCh09G005630.1 vs. Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 84/207 (40.58%), Postives = 109/207 (52.66%), Query Frame = 1


Query: 12  DTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESAR 71
           DTT TK+FVGGL + T    +R+YFE FGDI EAV+ITD+ T+KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 72  RACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQ----AAPSYSGVP 131
           RAC +PNP+IDGR+AN N+A +G  +P   +     GV     + +Q      P Y   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYI-YP 126

Query: 132 PPLNQPP--LPPPPPVVYSPY-GYPTYTPDYGYHQHYQHHQQPVYNPYFYGYSVQSPRGA 191
           P + QP   +P P P + SPY  Y   T      Q Y H+    Y  Y Y  S  +    
Sbjct: 127 PTIVQPSMVIPTPIPSLQSPYIDYNAAT------QAYTHYTTAAYEQYPYAASPATGYMG 186

Query: 192 FPIPSQSHQP---RVAVPP--YVYYPP 207
           +   S   QP       PP  Y+ Y P
Sbjct: 187 YGYTSPVQQPLSTTTGAPPTAYIQYQP 205

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BLAST of CmaCh09G005630.1 vs. TrEMBL
Match: A0A0A0LGV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.1e-100
Identity = 206/274 (75.18%), Postives = 220/274 (80.29%), Query Frame = 1


Query: 3   YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN------ 182
           PSY GVP PLNQPP+PPP    PPVVYSPYGYP Y+PDYGYH    HH Q VYN      
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAVYNPQVQQP 183

Query: 183 ------PYFYGYSVQSPRGAFPIPSQSHQ-PRVAVPP-YVYYPPPAAAAQYE-GSFSYPP 242
                 PY+YGYS  S    FP PSQSHQ PR+ +PP YVYYPPP    Q+E  SF+YPP
Sbjct: 184 QMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPP 243

Query: 243 -PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSE 255
            P P +IRHRF+STDSQTSQQTPTEAEA  VTS+
Sbjct: 244 QPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 271

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BLAST of CmaCh09G005630.1 vs. TrEMBL
Match: A0A067GMP3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039503mg PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.8e-81
Identity = 179/267 (67.04%), Postives = 196/267 (73.41%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFGDILEAVII+DKNT KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC NPNP+IDGRRANCNIA++GRPRPSPPRGR QGG  PY       A
Sbjct: 61  FVTFRDPESARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYH-QQQGGA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQ------PVYNPYFY 180
           PSY GV   L  PP PPPP V+Y P+GYPTYTPDYGYHQ   +HQ       P+ +PY+Y
Sbjct: 121 PSYGGVAASLPPPP-PPPPSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 180

Query: 181 GYSVQSPRGAFPIP-SQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIRHRFA- 240
           GYS+QSPRGA+  P +Q   P  A P Y+YYP      Q EG F  PPP   L R  F  
Sbjct: 181 GYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP-----TQAEGIFP-PPPTLQLPRQPFPF 240

Query: 241 STDSQTSQQTPTEAE-AEAVTSETSTT 259
           S+DSQT QQT  E E A  VTSE+  T
Sbjct: 241 SSDSQTPQQTSAETEAAREVTSESPNT 259

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BLAST of CmaCh09G005630.1 vs. TrEMBL
Match: E0CRL7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05840 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 8.3e-80
Identity = 183/285 (64.21%), Postives = 204/285 (71.58%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAY HYRS FGDTT TKVFVGGLAWETPTD MRR+FEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 1   MAYQHYRSPFGDTTFTKVFVGGLAWETPTDVMRRHFEQFGEILEAVIITDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+IDGRRANCNIA++GRPRPSPPRGR QGG NPY     Q A
Sbjct: 61  FVTFRDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-NPYHAGASQGA 120

Query: 121 PSYSGV-----PPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHH---QQPVY--- 180
            S+SGV     PPP   PP PPPPPV+Y PYGY TYTPDYGYHQ   ++   QQP Y   
Sbjct: 121 SSFSGVPAPLAPPPPPPPPPPPPPPVIYPPYGYATYTPDYGYHQQSLYNPQLQQPYYHQL 180

Query: 181 ---------NPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSF-SY 240
                    +PY+YGYS+Q+ RG F  P Q+H  RV  P Y+YYP      Q EGSF +Y
Sbjct: 181 YGASSSTVASPYYYGYSLQASRGTFSGP-QAH--RVQGPSYLYYP-----TQMEGSFPTY 240

Query: 241 PPPP-PPLI----RHRF-ASTDSQTSQQTPTEAEAEAVTSETSTT 259
           PPPP PP +    R  F +STDSQT QQ+ TE EA    SE+ TT
Sbjct: 241 PPPPVPPTLQPTSRPPFPSSTDSQTVQQSSTETEAGVSHSESPTT 276

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BLAST of CmaCh09G005630.1 vs. TrEMBL
Match: A0A0D2TUH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 7.0e-79
Identity = 170/275 (61.82%), Postives = 197/275 (71.64%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTT TKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIITDKNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+I GRRANCNIA++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQ----------HYQHH-----Q 180
           PSYSGV   +  PP PP PPV+Y PYG+PTY+P+YGYHQ           Y H       
Sbjct: 121 PSYSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPEYGYHQAVYNPQIQQAQYYHQLYGSSS 180

Query: 181 QPVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFS-YPPPPP 240
             + +PY++GYS+Q+PRG F  P      R+  P Y+YYP     +Q EGSFS YPPPP 
Sbjct: 181 TSMGSPYYFGYSLQAPRGTFSAPQAQ---RIPGPSYLYYP-----SQMEGSFSTYPPPPF 240

Query: 241 PLIRHRFAS-TDSQTSQQTPTEAEAEAVTSETSTT 259
              RH   S  DSQT Q T TE+E+ A+TSE+  T
Sbjct: 241 HPTRHPIPSPADSQTPQPTSTESESGAITSESPKT 266

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BLAST of CmaCh09G005630.1 vs. TrEMBL
Match: A0A0B0NQL3_GOSAR (RNA-binding 38 OS=Gossypium arboreum GN=F383_08143 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 7.0e-79
Identity = 170/275 (61.82%), Postives = 197/275 (71.64%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRS FGDTT TKVFVGGLAWETPT+EMRRYF+QFG+ILEAVIIT+KNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTFTKVFVGGLAWETPTEEMRRYFQQFGEILEAVIITEKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC +PNP+I GRRANCNIA++GRPRPSPPRGR QG  +P+QG   Q  
Sbjct: 61  FVTFRDPESARRACVDPNPVIGGRRANCNIASLGRPRPSPPRGRNQGS-SPFQGVAQQGT 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQ----------HYQHH-----Q 180
           PSYSGV   +  PP PP PPV+Y PYG+PTY+P+YGYHQ           Y H       
Sbjct: 121 PSYSGVAAAVPPPPPPPLPPVIYPPYGFPTYSPEYGYHQALYNPQIQQAQYYHQLYGSSS 180

Query: 181 QPVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFS-YPPPPP 240
             + +PY++GYS+Q+PRG F  P      R+  P Y+YYP     +Q EGSFS YPPPP 
Sbjct: 181 TSMGSPYYFGYSLQAPRGTFSAPQAQ---RIPGPSYLYYP-----SQMEGSFSTYPPPPF 240

Query: 241 PLIRHRFAS-TDSQTSQQTPTEAEAEAVTSETSTT 259
              RH F S  DSQT Q T TE+E  A+TSE+  T
Sbjct: 241 HPTRHPFPSPADSQTPQPTSTESEPGAITSESPKT 266

[Close]

BLAST of CmaCh09G005630.1 vs. TAIR10
Match: AT1G78260.1 (AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 211.8 bits (538), Expect = 4.8e-55
Identity = 142/291 (48.80%), Postives = 173/291 (59.45%), Query Frame = 1


Query: 5   HYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPTDEMRRYFEQFG+ILEAVIITDKNT KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQ-GGVNPYQGSTMQAAPSY 124
           R+++SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ G  + YQ        +Y
Sbjct: 66  RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPSTY 125

Query: 125 SGVPPPLNQPPLPPPPPVVYSPYGYPTYTPD-YGYHQ----------HYQHHQQPVY--- 184
           +G+  PL   P    P ++Y  YGY TY PD +GYHQ           Y   QQ +Y   
Sbjct: 126 TGMAAPL---PPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQLYGGG 185

Query: 185 -------------NPYFYGYSVQSPRGAFP---------IPSQSHQPRVAVPPYVYYPPP 244
                        +PY+YGYS+Q+PR  +           P Q H  R + P ++ YP  
Sbjct: 186 ATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYPSN 245

Query: 245 AAAAQYEGSFSYPPPPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSETSTT 259
           ++ A            PPL     +ST+S+   Q    AE EA T+    T
Sbjct: 246 SSFA------------PPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEIT 277

[Close]

BLAST of CmaCh09G005630.1 vs. TAIR10
Match: AT1G22330.1 (AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 192.6 bits (488), Expect = 3.0e-49
Identity = 125/246 (50.81%), Postives = 149/246 (60.57%), Query Frame = 1


Query: 5   HYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTF 64
           +YRS FGDTT TKVFVGGLAWETPTDEMRRYF+QFG+ILEAVIITDK T KSKGYGFVTF
Sbjct: 6   YYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65

Query: 65  RDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGG-VNPYQGSTMQAAPSY 124
           RD++SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQGG  + YQG       SY
Sbjct: 66  RDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG---GQSSY 125

Query: 125 SGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQ---HYQHHQQPVYNPYFYGYSVQS 184
           +G+  P+ Q        ++Y  YGY TY  +YGYHQ   + Q  Q   Y    YG     
Sbjct: 126 TGMAAPVQQ---AAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYG----- 185

Query: 185 PRGAFPIPSQSHQPRVAVPPYVYY--PPPAAAAQYEGSFSYPPPPPPLIRHRFASTDSQT 244
             G    PS S+   +   PY Y   P P     ++  + Y         H       Q 
Sbjct: 186 -GGGATSPSSSN---IMPSPYYYLQAPSPRPYLHHQQHYQY---------HHHQQQQQQQ 226

[Close]

BLAST of CmaCh09G005630.1 vs. TAIR10
Match: AT1G76460.1 (AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-38
Identity = 95/176 (53.98%), Postives = 116/176 (65.91%), Query Frame = 1


Query: 5   HY-RSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTT TKVFVGGLAWET ++ +R++FEQ+G+ILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPP-------RGRGQGGVNPYQGST 124
           FRD E+ARRACA+P P+IDGRRANCN+A++GRPRP  P        GR +   +PY G+ 
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLR-PASPYIGNV 131

Query: 125 MQAAPSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPY 173
                S  G  P     P      VVY PYG   Y P+Y Y Q      Q +Y+PY
Sbjct: 132 QGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYSQ-----SQGLYSPY 180

[Close]

BLAST of CmaCh09G005630.1 vs. TAIR10
Match: AT1G22910.3 (AT1G22910.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-35
Identity = 82/149 (55.03%), Postives = 104/149 (69.80%), Query Frame = 1


Query: 11  GDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESA 70
           GDTT TKVFVGGLAWET  + M+++FEQFG+ILEAV+ITDK + +SKGYGFVTFR+AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  RRACANPNPMIDGRRANCNIAAMG--RPRPSPPRGRGQGGVNPYQ--GSTMQAAPSYSGV 130
           R AC +  P+IDGRRANCN+A++G  R +PS P   G G +N  +   STMQ      G 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTG---FGP 127

Query: 131 PPPLNQPPLPPPPPVVYSPYGYPTYTPDY 156
           PPP   P     P +  + +GY  Y+PDY
Sbjct: 128 PPPPQPPTFTHYPHLPLNLFGYSPYSPDY 153

[Close]

BLAST of CmaCh09G005630.1 vs. TAIR10
Match: AT1G20880.1 (AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-35
Identity = 110/271 (40.59%), Postives = 142/271 (52.40%), Query Frame = 1


Query: 5   HY-RSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFVT 64
           HY  S FGDTT TKVFVGGLAWET ++ +RR+F+Q+GDILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 65  FRDAESARRACANPNPMIDGRRANCNIAAMGRPRP---------SPPRGRGQGGVNPYQG 124
           FRD E+ARRAC +P P+IDGRRANCN+A++GR RP         +P R R     +PY G
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPP---SPYVG 131

Query: 125 STMQAAPSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYNPYFY 184
           S       + G   P +QPP       V  PYG   Y PDY Y Q      Q  Y PY  
Sbjct: 132 SVQSPRGLHFG-SHPYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQ-----SQGFYGPYMG 191

Query: 185 GYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYP---------PPPPP 244
              +Q     + +P   + P        +  P A        +S+P           P  
Sbjct: 192 QQYLQ----VYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMS 251

Query: 245 LIRHRFASTDSQTSQQTPTEAEAEAVTSETS 257
            I+  + S  + T Q+   +   + + S  S
Sbjct: 252 AIQSPYPSPSAPTHQRVIVQTPPQYIQSSGS 269

[Close]

BLAST of CmaCh09G005630.1 vs. NCBI nr
Match: gi|449437302|ref|XP_004136431.1| (PREDICTED: RNA-binding protein 38 [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 1.6e-100
Identity = 206/274 (75.18%), Postives = 220/274 (80.29%), Query Frame = 1


Query: 3   YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62
           YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN------ 182
           PSY GVP PLNQPP+PPP    PPVVYSPYGYP Y+PDYGYH    HH Q VYN      
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAVYNPQVQQP 183

Query: 183 ------PYFYGYSVQSPRGAFPIPSQSHQ-PRVAVPP-YVYYPPPAAAAQYE-GSFSYPP 242
                 PY+YGYS  S    FP PSQSHQ PR+ +PP YVYYPPP    Q+E  SF+YPP
Sbjct: 184 QMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPP 243

Query: 243 -PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSE 255
            P P +IRHRF+STDSQTSQQTPTEAEA  VTS+
Sbjct: 244 QPQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 271

[Close]

BLAST of CmaCh09G005630.1 vs. NCBI nr
Match: gi|1009169788|ref|XP_015865854.1| (PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba])

HSP 1 Score: 311.6 bits (797), Expect = 1.3e-81
Identity = 178/279 (63.80%), Postives = 201/279 (72.04%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 33  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYG 92

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR QGG +PYQG T   A
Sbjct: 93  FVTFRDPESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPYQGGTPHVA 152

Query: 121 -PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYH--------QHYQHHQQ----- 180
            P+YSGVP PL   P PPPPPV+Y PYGYPTYTPDYGYH        QH Q++ Q     
Sbjct: 153 PPAYSGVPTPL---PPPPPPPVIYQPYGYPTYTPDYGYHQALYNPQMQHSQYYHQLYGTS 212

Query: 181 --PVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGS--FSYPPP 240
              +  PY+YGYSVQ+PRG F  P Q+   R+  P Y+YYP      Q EG+   +YPPP
Sbjct: 213 SSTMPTPYYYGYSVQAPRGTFSTPQQAAH-RMPGPSYLYYP-----TQMEGTSFTTYPPP 272

Query: 241 PPPLIRHRF---ASTDSQTSQQTPTEAEAEAVTSETSTT 259
            P    H      +TDSQT + +  E E    TSE+  T
Sbjct: 273 HPTTRLHSLIPSPNTDSQTQRHSSAETEGGVFTSESPNT 301

[Close]

BLAST of CmaCh09G005630.1 vs. NCBI nr
Match: gi|641862316|gb|KDO81003.1| (hypothetical protein CISIN_1g039503mg [Citrus sinensis])

HSP 1 Score: 308.9 bits (790), Expect = 8.3e-81
Identity = 179/267 (67.04%), Postives = 196/267 (73.41%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFGDILEAVII+DKNT KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIISDKNTGKSKGYG 60

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARRAC NPNP+IDGRRANCNIA++GRPRPSPPRGR QGG  PY       A
Sbjct: 61  FVTFRDPESARRACDNPNPVIDGRRANCNIASLGRPRPSPPRGRNQGGNIPYH-QQQGGA 120

Query: 121 PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYHQHYQHHQQ------PVYNPYFY 180
           PSY GV   L  PP PPPP V+Y P+GYPTYTPDYGYHQ   +HQ       P+ +PY+Y
Sbjct: 121 PSYGGVAASLPPPP-PPPPSVIYQPFGYPTYTPDYGYHQPQYYHQMYGTTSTPMGSPYYY 180

Query: 181 GYSVQSPRGAFPIP-SQSHQPRVAVPPYVYYPPPAAAAQYEGSFSYPPPPPPLIRHRFA- 240
           GYS+QSPRGA+  P +Q   P  A P Y+YYP      Q EG F  PPP   L R  F  
Sbjct: 181 GYSLQSPRGAYSAPQAQRMPPSPAGPSYLYYP-----TQAEGIFP-PPPTLQLPRQPFPF 240

Query: 241 STDSQTSQQTPTEAE-AEAVTSETSTT 259
           S+DSQT QQT  E E A  VTSE+  T
Sbjct: 241 SSDSQTPQQTSAETEAAREVTSESPNT 259

[Close]

BLAST of CmaCh09G005630.1 vs. NCBI nr
Match: gi|1009130262|ref|XP_015882201.1| (PREDICTED: RNA-binding protein 38-like, partial [Ziziphus jujuba])

HSP 1 Score: 308.1 bits (788), Expect = 1.4e-80
Identity = 172/263 (65.40%), Postives = 194/263 (73.76%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MAYPHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT KSKGYG
Sbjct: 33  MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYG 92

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRD ESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR QGG +PYQG T   A
Sbjct: 93  FVTFRDPESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRNQGG-SPYQGGTPHGA 152

Query: 121 -PSYSGVPPPLNQPPLPPPPPVVYSPYGYPTYTPDYGYH--------QHYQHHQQ----- 180
            P+YSGVP PL   P PPPPPV+Y PYGYPTYTPDYGYH        QH Q++ Q     
Sbjct: 153 PPAYSGVPTPL---PPPPPPPVIYQPYGYPTYTPDYGYHQALYNPQMQHSQYYHQLYGTS 212

Query: 181 --PVYNPYFYGYSVQSPRGAFPIPSQSHQPRVAVPPYVYYPPPAAAAQYEGS--FSYPPP 240
              +  PY+YGYSVQ+PRG F  P Q+   R+  P Y+YYP      Q EG+   +YPPP
Sbjct: 213 SSTMPTPYYYGYSVQAPRGTFSTPQQAAH-RMPGPSYLYYP-----TQMEGTSFTTYPPP 272

Query: 241 PPPLIRHRF---ASTDSQTSQQT 243
            P    H      +TDSQT + +
Sbjct: 273 HPTTRLHSLIPSPNTDSQTQRHS 285

[Close]

BLAST of CmaCh09G005630.1 vs. NCBI nr
Match: gi|470129496|ref|XP_004300653.1| (PREDICTED: RNA-binding protein 24 [Fragaria vesca subsp. vesca])

HSP 1 Score: 305.4 bits (781), Expect = 9.1e-80
Identity = 179/289 (61.94%), Postives = 203/289 (70.24%), Query Frame = 1


Query: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60
           MA+PHYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVII DKNT KSKGYG
Sbjct: 27  MAHPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIIADKNTGKSKGYG 86

Query: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120
           FVTFRDAESARR+CANPNP+IDGRRANCNIA++GRPRPSPPRGR Q G +PYQG+  QAA
Sbjct: 87  FVTFRDAESARRSCANPNPVIDGRRANCNIASLGRPRPSPPRGRNQ-GTSPYQGNAPQAA 146

Query: 121 PSYSGVPPPLNQPPLP---PPPPVVYSPYGYPTYTPDYGYH-------QHYQHHQQPVY- 180
           PSY GVPPP   PPLP      P++Y  Y YPTY+PDYGYH       Q   HHQQP Y 
Sbjct: 147 PSYGGVPPPPPPPPLPQAAAAAPIIYPSYSYPTYSPDYGYHQQATMYNQQVVHHQQPQYY 206

Query: 181 --------------NPYFY--GYSVQSPRGAF-PIPSQSHQPRVAVPPYVYYPPPAAAAQ 240
                          PY+Y  GYS QSPRG+F P+P Q+H+   A   YVYYP      Q
Sbjct: 207 QQQLYGASSPSTMGAPYYYHQGYSFQSPRGSFSPVPPQAHR-MPAAASYVYYP----TQQ 266

Query: 241 YEGSF-SYPPP---PPPLIRH--RFASTDSQTSQQTPTEAEAEAVTSET 256
            + SF SYPPP   PPP +R     + +DSQ  Q   TE+E  A TS++
Sbjct: 267 MDASFSSYPPPILQPPPTLRRPPLTSPSDSQNPQHASTESEPGAATSDS 309

The following BLAST results are available for this feature:

BLAST of CmaCh09G005630.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARP1_ARATH	4.9e-25	47.02	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1	[more]
RB24B_XENLA	1.4e-24	59.34	RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1	[more]
RBM24_MOUSE	2.4e-24	59.34	RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1	[more]
RBM24_HUMAN	7.1e-24	58.24	RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1	[more]
RBM38_XENLA	1.3e-22	40.58	RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2	[more]

BLAST of CmaCh09G005630.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGV2_CUCSA	1.1e-100	75.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889750 PE=4 SV=1	[more]
A0A067GMP3_CITSI	5.8e-81	67.04	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039503mg PE=4 SV=1	[more]
E0CRL7_VITVI	8.3e-80	64.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05840 PE=4 SV=...	[more]
A0A0D2TUH0_GOSRA	7.0e-79	61.82	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G236000 PE=4 SV=1	[more]
A0A0B0NQL3_GOSAR	7.0e-79	61.82	RNA-binding 38 OS=Gossypium arboreum GN=F383_08143 PE=4 SV=1	[more]

BLAST of CmaCh09G005630.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78260.1	4.8e-55	48.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.0e-49	50.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.4e-38	53.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.9e-35	55.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	4.3e-35	40.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmaCh09G005630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437302\|ref\|XP_004136431.1\|	1.6e-100	75.18	PREDICTED: RNA-binding protein 38 [Cucumis sativus]	[more]
gi\|1009169788\|ref\|XP_015865854.1\|	1.3e-81	63.80	PREDICTED: RNA-binding protein 38-like [Ziziphus jujuba]	[more]
gi\|641862316\|gb\|KDO81003.1\|	8.3e-81	67.04	hypothetical protein CISIN_1g039503mg [Citrus sinensis]	[more]
gi\|1009130262\|ref\|XP_015882201.1\|	1.4e-80	65.40	PREDICTED: RNA-binding protein 38-like, partial [Ziziphus jujuba]	[more]
gi\|470129496\|ref\|XP_004300653.1\|	9.1e-80	61.94	PREDICTED: RNA-binding protein 24 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh09G005630	CmaCh09G005630	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005630.1	CmaCh09G005630.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005630.1.exon.6	CmaCh09G005630.1.exon.6	exon
CmaCh09G005630.1.exon.5	CmaCh09G005630.1.exon.5	exon
CmaCh09G005630.1.exon.4	CmaCh09G005630.1.exon.4	exon
CmaCh09G005630.1.exon.3	CmaCh09G005630.1.exon.3	exon
CmaCh09G005630.1.exon.2	CmaCh09G005630.1.exon.2	exon
CmaCh09G005630.1.exon.1	CmaCh09G005630.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005630.1.five_prime_UTR.1	CmaCh09G005630.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005630.1.CDS.1	CmaCh09G005630.1.CDS.1	CDS
CmaCh09G005630.1.CDS.2	CmaCh09G005630.1.CDS.2	CDS
CmaCh09G005630.1.CDS.3	CmaCh09G005630.1.CDS.3	CDS
CmaCh09G005630.1.CDS.4	CmaCh09G005630.1.CDS.4	CDS
CmaCh09G005630.1.CDS.5	CmaCh09G005630.1.CDS.5	CDS
CmaCh09G005630.1.CDS.6	CmaCh09G005630.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh09G005630.1.three_prime_UTR.1	CmaCh09G005630.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..76 score: 6.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 score: 1.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 16..93 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 12..108 score: 1.5
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 10..115 score: 5.24
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 128..206 score: 1.0E-41coord: 12..98 score: 1.0
None	No IPR available	PANTHER	PTHR24012:SF421	SUBFAMILY NOT NAMED	coord: 12..98 score: 1.0E-41coord: 128..206 score: 1.0