CmaCh06G006800 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G006800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr06 : 3401628 .. 3401900 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACCCTATGCCTTACACTCTTCTCCCTCATCCTCCTCGCTCCTAGATTGCTCTCTCTCGTTGCCTACTTTTGGCCTCTCTTCCTCTCCACCGCTCTCTTCCTCCTCGCTGTCCTTCTTTTTGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTACGTCGCCGGACACCTCGACCTAGACGCCTCGCTCAAGACCGATTAG

mRNA sequence

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACCCTATGCCTTACACTCTTCTCCCTCATCCTCCTCGCTCCTAGATTGCTCTCTCTCGTTGCCTACTTTTGGCCTCTCTTCCTCTCCACCGCTCTCTTCCTCCTCGCTGTCCTTCTTTTTGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTACGTCGCCGGACACCTCGACCTAGACGCCTCGCTCAAGACCGATTAG

Coding sequence (CDS)

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACCCTATGCCTTACACTCTTCTCCCTCATCCTCCTCGCTCCTAGATTGCTCTCTCTCGTTGCCTACTTTTGGCCTCTCTTCCTCTCCACCGCTCTCTTCCTCCTCGCTGTCCTTCTTTTTGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTACGTCGCCGGACACCTCGACCTAGACGCCTCGCTCAAGACCGATTAG

Protein sequence

MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD

Homology

[Close]

BLAST of CmaCh06G006800 vs. TrEMBL
Match: A0A0A0L7E9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-27
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CmaCh06G006800 vs. TrEMBL
Match: M5WI68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013921mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of CmaCh06G006800 vs. TrEMBL
Match: V7BC13_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G278500g PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEI  +V KFR+HFL AL LCLTLFSLIL+APR ++L+AYF PLFLSTAL L  V +FA 
Sbjct: 1  MEIQEQVLKFRYHFLGALLLCLTLFSLILMAPRFITLLAYFCPLFLSTALVLALVFVFAK 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGHLDL 84
           S LP  D T     G+GLLNYVAGH DL
Sbjct: 61 TSPLPSSDATSLHSAGQGLLNYVAGHHDL 89

[Close]

BLAST of CmaCh06G006800 vs. TrEMBL
Match: A0A0L9UV50_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g012300 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          ME+  K++KFR+HFL AL  CLT+FSL ++APR L+L+AYFWPLFLSTAL    V   A 
Sbjct: 1  MEVQEKLFKFRYHFLGALLFCLTIFSLTIMAPRFLTLLAYFWPLFLSTALVFALVFFIAR 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGHLDLDASLK 89
           S LPP D T     G+GLL+YVAGH DL +  +
Sbjct: 61 TSHLPPSDATSLYSAGQGLLDYVAGHHDLPSDTR 94

[Close]

BLAST of CmaCh06G006800 vs. TrEMBL
Match: A0A0S3RJA5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G018900 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          ME+  K++KFR+HFL AL  CLT+FSL ++APR L+L+AYFWPLFLSTAL    V   A 
Sbjct: 1  MEVQEKLFKFRYHFLGALLFCLTIFSLTIMAPRFLTLLAYFWPLFLSTALVFALVFFIAR 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGHLDLDASLK 89
           S LPP D T     G+GLL+YVAGH DL +  +
Sbjct: 61 TSHLPPSDATSLYSAGQGLLDYVAGHHDLPSDTR 94

[Close]

BLAST of CmaCh06G006800 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
           MEI +K+ ++RFHF+  + + + + SL+  APR+L+++AYFWPLF STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  ASLPPPDKTGEGLLNYVAG 80
                 + TGE L++YVAG
Sbjct: 182 FQQLSEEATGERLMDYVAG 200

[Close]

BLAST of CmaCh06G006800 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-09
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 1


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
           ME   K+ KF+   + A  L L   +L+  +P  L++++YFWPLFLSTALFL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  ASLPPPDKT------------GEGLLNYVAG--HLDL--DASLKTD 91
            S  P   T             EG+L+YV G  H D+  D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: gi|659096311|ref|XP_008449026.1| (PREDICTED: uncharacterized protein LOC103491022 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 73/92 (79.35%), Postives = 77/92 (83.70%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD--ASLKTD 91
           SLPPPDK  EGLL+YVAGH DLD  +SLK+D
Sbjct: 61 TSLPPPDKAAEGLLSYVAGHHDLDSSSSLKSD 92

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: gi|700200883|gb|KGN56016.1| (hypothetical protein Csa_3G047770 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-27
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: gi|645279171|ref|XP_008244582.1| (PREDICTED: uncharacterized protein LOC103342721 [Prunus mume])

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYTITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: gi|595880790|ref|XP_007212293.1| (hypothetical protein PRUPE_ppa013921mg [Prunus persica])

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of CmaCh06G006800 vs. NCBI nr
Match: gi|764543091|ref|XP_011459287.1| (PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca])

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLILLAPRLLSLVAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K+ KF++HFL+AL  CLTL+SL L APR L+++AYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLSALIFCLTLYSLTLFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLP----PPDKTGEGLLNYVAGHLD 83
           SLP      DK GEGLL+YVAG  D
Sbjct: 61 TSLPGSDSHADKAGEGLLDYVAGQPD 86

The following BLAST results are available for this feature:

BLAST of CmaCh06G006800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G006800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9_CUCSA	1.7e-27	79.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047770 PE=4 SV=1	[more]
M5WI68_PRUPE	1.7e-19	64.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013921mg PE=4 SV=1	[more]
V7BC13_PHAVU	1.2e-17	65.17	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G278500g PE=4 SV=1	[more]
A0A0L9UV50_PHAAN	1.6e-17	56.38	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g012300 PE=4 SV=1	[more]
A0A0S3RJA5_PHAAN	1.6e-17	56.38	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G018900 PE=...	[more]

BLAST of CmaCh06G006800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	1.4e-12	44.30	unknown protein	[more]
AT3G13175.1	2.4e-09	39.62	unknown protein	[more]

BLAST of CmaCh06G006800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096311\|ref\|XP_008449026.1\|	3.7e-28	79.35	PREDICTED: uncharacterized protein LOC103491022 [Cucumis melo]	[more]
gi\|700200883\|gb\|KGN56016.1\|	2.4e-27	79.12	hypothetical protein Csa_3G047770 [Cucumis sativus]	[more]
gi\|645279171\|ref\|XP_008244582.1\|	2.4e-19	64.56	PREDICTED: uncharacterized protein LOC103342721 [Prunus mume]	[more]
gi\|595880790\|ref\|XP_007212293.1\|	2.4e-19	64.56	hypothetical protein PRUPE_ppa013921mg [Prunus persica]	[more]
gi\|764543091\|ref\|XP_011459287.1\|	3.1e-19	63.95	PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G006800.1	CmaCh06G006800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..80 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G006800	Cla004457	Watermelon (97103) v1	cmawmB783
CmaCh06G006800	ClCG10G004230	Watermelon (Charleston Gray)	cmawcgB727
CmaCh06G006800	Lsi05G004920	Bottle gourd (USVL1VR-Ls)	cmalsiB767
CmaCh06G006800	Cp4.1LG08g08200	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G006800	CsaV3_3G004060	Cucumber (Chinese Long) v3	cmacucB0975
CmaCh06G006800	Cla97C10G188700	Watermelon (97103) v2	cmawmbB845
CmaCh06G006800	CsGy3G004050	Cucumber (Gy14) v2	cgybcmaB438
CmaCh06G006800	Carg23540	Silver-seed gourd	carcmaB0013

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G006800	Cucurbita pepo (Zucchini)	cmacpeB814
CmaCh06G006800	Cucumber (Gy14) v2	cgybcmaB437
CmaCh06G006800	Melon (DHL92) v3.6.1	cmamedB868
CmaCh06G006800	Melon (DHL92) v3.6.1	cmamedB869
CmaCh06G006800	Cucumber (Chinese Long) v3	cmacucB0974
CmaCh06G006800	Watermelon (97103) v2	cmawmbB843
CmaCh06G006800	Wax gourd	cmawgoB0985
CmaCh06G006800	Wax gourd	cmawgoB0988
CmaCh06G006800	Wax gourd	cmawgoB0995
CmaCh06G006800	Cucurbita maxima (Rimu)	cmacmaB354
CmaCh06G006800	Cucumber (Gy14) v1	cgycmaB0032
CmaCh06G006800	Cucumber (Gy14) v1	cgycmaB0033
CmaCh06G006800	Cucurbita moschata (Rifu)	cmacmoB804
CmaCh06G006800	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G006800	Wild cucumber (PI 183967)	cmacpiB837
CmaCh06G006800	Wild cucumber (PI 183967)	cmacpiB838
CmaCh06G006800	Cucumber (Chinese Long) v2	cmacuB824
CmaCh06G006800	Cucumber (Chinese Long) v2	cmacuB825
CmaCh06G006800	Melon (DHL92) v3.5.1	cmameB764
CmaCh06G006800	Watermelon (Charleston Gray)	cmawcgB725
CmaCh06G006800	Watermelon (Charleston Gray)	cmawcgB730