Cla97C10G188700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G188700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein, putative
Location	Cla97Chr10 : 4783642 .. 4783923 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCCACCAAAGTAGTGAAGTTCAGATTCCACATTGCAGTAACCCTAATCCTCTGTTTAACTCTCTTCTCCCTCATCCTTCTCGCTCCAAGATTCCTCTCGCTCCTCGCTTACTTTTGGCCTCTCTTCCTCTCCACCGCCGTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTTCCGCCGCCTGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCACGACCACCACCACATCGACGCCTCTCTCAAATCCGATTAA

mRNA sequence

ATGGAGATCCCCACCAAAGTAGTGAAGTTCAGATTCCACATTGCAGTAACCCTAATCCTCTGTTTAACTCTCTTCTCCCTCATCCTTCTCGCTCCAAGATTCCTCTCGCTCCTCGCTTACTTTTGGCCTCTCTTCCTCTCCACCGCCGTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTTCCGCCGCCTGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCACGACCACCACCACATCGACGCCTCTCTCAAATCCGATTAA

Coding sequence (CDS)

ATGGAGATCCCCACCAAAGTAGTGAAGTTCAGATTCCACATTGCAGTAACCCTAATCCTCTGTTTAACTCTCTTCTCCCTCATCCTTCTCGCTCCAAGATTCCTCTCGCTCCTCGCTTACTTTTGGCCTCTCTTCCTCTCCACCGCCGTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTTCCGCCGCCTGATAAAGCCGCCGAAGGCCTCCTCAACTATGTCGCCGGCCACCACGACCACCACCACATCGACGCCTCTCTCAAATCCGATTAA

Protein sequence

MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFANTSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD

Homology

[Close]

BLAST of Cla97C10G188700 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_3G047770 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP+KV+KFRFHI VTLIL LTLFSL LLAP FLSLLAYFWPLFLSTA+FLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD 94
          TSLP PDKAAEGLL+YVAGHHD     +SLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLD--SSSLKSD 91

[Close]

BLAST of Cla97C10G188700 vs. NCBI nr
Match: RDX71417.1 (hypothetical protein CR513_49244, partial [Mucuna pruriens])

HSP 1 Score: 102.8 bits (255), Expect = 6.3e-19
Identity = 63/99 (63.64%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP KV+KFRFH    L+ CLTLFSLIL+APRF++LLAYFWPLFLSTAV L  V  FA 
Sbjct: 1  MEIPEKVLKFRFHFLGALLFCLTLFSLILMAPRFITLLAYFWPLFLSTAVVLALVFFFAK 60

Query: 61 TS-LPPPD-----KAAEGLLNYVAGHHDHHHIDASLKSD 94
          TS LP  D      A +GLL+YVAGHHD   +D   KSD
Sbjct: 61 TSPLPSADATSFHNAGQGLLDYVAGHHD-LPLDTRRKSD 98

[Close]

BLAST of Cla97C10G188700 vs. NCBI nr
Match: XP_007212293.1 (uncharacterized protein LOC18778362 [Prunus persica] >ONI13735.1 hypothetical protein PRUPE_4G242100 [Prunus persica])

HSP 1 Score: 102.4 bits (254), Expect = 8.2e-19
Identity = 51/83 (61.45%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K++KF+FH    LILCLTL+++ L+APRFL++LAYFWPLFLSTA+FL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDH 84
          T+LP  + + EGLL+YVAG  +H
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEH 83

[Close]

BLAST of Cla97C10G188700 vs. NCBI nr
Match: XP_008244582.1 (PREDICTED: uncharacterized protein LOC103342721 [Prunus mume])

HSP 1 Score: 102.4 bits (254), Expect = 8.2e-19
Identity = 51/83 (61.45%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K++KF+FH    LILCLTL+++ L+APRFL++LAYFWPLFLSTA+FL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYTITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDH 84
          T+LP  + + EGLL+YVAG  +H
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEH 83

[Close]

BLAST of Cla97C10G188700 vs. NCBI nr
Match: XP_011459287.1 (PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca])

HSP 1 Score: 102.4 bits (254), Expect = 8.2e-19
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K++KF++H    LI CLTL+SL L APRFL++LAYFWPLFLSTA+FL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLSALIFCLTLYSLTLFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLP----PPDKAAEGLLNYVAGHHDH 84
          TSLP      DKA EGLL+YVAG  DH
Sbjct: 61 TSLPGSDSHADKAGEGLLDYVAGQPDH 87

[Close]

BLAST of Cla97C10G188700 vs. TrEMBL
Match: tr|A0A0A0L7E9|A0A0A0L7E9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-29
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP+KV+KFRFHI VTLIL LTLFSL LLAP FLSLLAYFWPLFLSTA+FLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDHHHIDASLKSD 94
          TSLP PDKAAEGLL+YVAGHHD     +SLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLD--SSSLKSD 91

[Close]

BLAST of Cla97C10G188700 vs. TrEMBL
Match: tr|M5WI68|M5WI68_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-19
Identity = 51/83 (61.45%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K++KF+FH    LILCLTL+++ L+APRFL++LAYFWPLFLSTA+FL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHDH 84
          T+LP  + + EGLL+YVAG  +H
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEH 83

[Close]

BLAST of Cla97C10G188700 vs. TrEMBL
Match: tr|A0A2P6QFZ6|A0A2P6QFZ6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-19
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEIP K++KF++H    LI CLTL+SL L APRFL++LAYFWPLFLSTA+FL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLCALIFCLTLYSLALFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLP-----PPDKAAEGLLNYVAGHHDHHHIDA 89
          TSLP       DKA EGLL+YVAG  DH  +++
Sbjct: 61 TSLPGTDAHAADKAGEGLLDYVAGQPDHTVVES 93

[Close]

BLAST of Cla97C10G188700 vs. TrEMBL
Match: tr|A0A218XLN4|A0A218XLN4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012054 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          M IP  ++K+R HI V +IL L+L  L+LLAPRF++LLAYFWPLFLSTA+FL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 TSLPPPDKAAEGLLNYVAGHHD 83
          TS P PDKA EGLL+YVAG  D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

[Close]

BLAST of Cla97C10G188700 vs. TrEMBL
Match: tr|A0A151RFE7|A0A151RFE7_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_037276 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-18
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
          MEI  ++ KFR+HIA  L+LCL +FS + LAPRFL++LA+FWPLFLSTA+FL  VL F  
Sbjct: 1  MEIQKQLFKFRYHIAGALLLCLAIFSFLYLAPRFLNVLAFFWPLFLSTALFLALVLFFGK 60

Query: 61 TSLPPPD-----KAAEGLLNYVAGHHDHHHIDASLKSD 94
          T  PPP      K AE LL++VAGHH    +DA+ KSD
Sbjct: 61 TQPPPPSDVDLPKPAEDLLHFVAGHHPDPPLDAAHKSD 98

[Close]

BLAST of Cla97C10G188700 vs. TAIR10
Match: AT4G16400.1 (unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1   MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
           MEI  K++++RFH  VT+++ + + SL+  APR L++LAYFWPLF STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPPPDKAAEGLLNYVAGHHDHHH 86
                 +   E L++YVAG  +  H
Sbjct: 182 FQQLSEEATGERLMDYVAGRPEDSH 206

[Close]

BLAST of Cla97C10G188700 vs. TAIR10
Match: AT3G13175.1 (unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 1   MEIPTKVVKFRFHIAVTLILCLTLFSLILLAPRFLSLLAYFWPLFLSTAVFLLAVLLFAN 60
           ME   K++KF+  I    +L L   +L+  +P FL++L+YFWPLFLSTA+FL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  TSLPPPDK------------AAEGLLNY-VAGHHDHHHIDASLKSD 94
           TS  P               AAEG+L+Y V G H+    D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

The following BLAST results are available for this feature:

BLAST of Cla97C10G188700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56016.1	2.3e-29	83.87	hypothetical protein Csa_3G047770 [Cucumis sativus]	[more]
RDX71417.1	6.3e-19	63.64	hypothetical protein CR513_49244, partial [Mucuna pruriens]	[more]
XP_007212293.1	8.2e-19	61.45	uncharacterized protein LOC18778362 [Prunus persica] >ONI13735.1 hypothetical pr...	[more]
XP_008244582.1	8.2e-19	61.45	PREDICTED: uncharacterized protein LOC103342721 [Prunus mume]	[more]
XP_011459287.1	8.2e-19	64.37	PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca]	[more]

BLAST of Cla97C10G188700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7E9\|A0A0A0L7E9_CUCSA	1.5e-29	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
tr\|M5WI68\|M5WI68_PRUPE	5.4e-19	61.45	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
tr\|A0A2P6QFZ6\|A0A2P6QFZ6_ROSCH	5.4e-19	60.22	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4...	[more]
tr\|A0A218XLN4\|A0A218XLN4_PUNGR	2.7e-18	64.63	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012054 PE=4 SV=1	[more]
tr\|A0A151RFE7\|A0A151RFE7_CAJCA	3.5e-18	57.14	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_037276 PE=4 SV=1	[more]

BLAST of Cla97C10G188700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G188700 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	2.0e-11	42.35	unknown protein	[more]
AT3G13175.1	1.0e-10	41.51	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G188700.1	Cla97C10G188700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..85
None	No IPR available	PANTHER	PTHR34125:SF1	SUBFAMILY NOT NAMED	coord: 1..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G188700	Cla004457	Watermelon (97103) v1	wmwmbB057
Cla97C10G188700	ClCG10G004230	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G188700	CmaCh16G009680	Cucurbita maxima (Rimu)	cmawmbB338
Cla97C10G188700	CmaCh06G006800	Cucurbita maxima (Rimu)	cmawmbB845
Cla97C10G188700	Lsi05G004920	Bottle gourd (USVL1VR-Ls)	lsiwmbB322
Cla97C10G188700	Carg23540	Silver-seed gourd	carwmbB0007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G188700	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G188700	Silver-seed gourd	carwmbB0357
Cla97C10G188700	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G188700	Cucumber (Gy14) v1	cgywmbB016
Cla97C10G188700	Cucurbita maxima (Rimu)	cmawmbB566
Cla97C10G188700	Cucurbita moschata (Rifu)	cmowmbB321
Cla97C10G188700	Cucurbita moschata (Rifu)	cmowmbB819
Cla97C10G188700	Cucurbita moschata (Rifu)	cmowmbB824
Cla97C10G188700	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G188700	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G188700	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G188700	Bottle gourd (USVL1VR-Ls)	lsiwmbB042
Cla97C10G188700	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G188700	Watermelon (97103) v1	wmwmbB052
Cla97C10G188700	Wax gourd	wgowmbB003