Carg23540 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23540
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein, putative
Location	Cucurbita_argyrosperma_scaffold_376 : 86310 .. 86582 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTCGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTCTCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA

mRNA sequence

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTCGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTCTCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA

Coding sequence (CDS)

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTCGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTCCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGTGAAGGCCTTCTCAACTATGTCGCCGGCCATCTCGACCTAGACGCCTCGCTCAAGACTGATTAA

Protein sequence

MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD

Homology

[Close]

BLAST of Carg23540 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_3G047770 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of Carg23540 vs. NCBI nr
Match: XP_007212293.1 (uncharacterized protein LOC18778362 [Prunus persica] >ONI13735.1 hypothetical protein PRUPE_4G242100 [Prunus persica])

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Carg23540 vs. NCBI nr
Match: XP_008244582.1 (PREDICTED: uncharacterized protein LOC103342721 [Prunus mume])

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYTITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Carg23540 vs. NCBI nr
Match: XP_021818033.1 (uncharacterized protein LOC110760142 [Prunus avium])

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Carg23540 vs. NCBI nr
Match: PQP93868.1 (uncharacterized protein Pyn_25186 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEPSGEGLLDYVAG 79

[Close]

BLAST of Carg23540 vs. TAIR10
Match: AT4G16400.1 (unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.7e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
           MEI +K+ ++RFHF+  + + + + SLV  APR+L+++AYFWPL  STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  ASLPPPDKTGEGLLNYVAG 80
                 + TGE L++YVAG
Sbjct: 182 FQQLSEEATGERLMDYVAG 200

[Close]

BLAST of Carg23540 vs. TAIR10
Match: AT3G13175.1 (unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
           ME   K+ KF+   + A  L L   +LV  +P  L++++YFWPL LSTALFL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  ASLPPPDKT------------GEGLLNYVAG--HLDL--DASLKTD 91
            S  P   T             EG+L+YV G  H D+  D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

[Close]

BLAST of Carg23540 vs. TrEMBL
Match: tr|A0A0A0L7E9|A0A0A0L7E9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of Carg23540 vs. TrEMBL
Match: tr|M5WI68|M5WI68_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Carg23540 vs. TrEMBL
Match: tr|A0A2P6QFZ6|A0A2P6QFZ6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF++HFL AL  CLTL+SL L APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLCALIFCLTLYSLALFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLP-----PPDKTGEGLLNYVAGHLD 83
           SLP       DK GEGLL+YVAG  D
Sbjct: 61 TSLPGTDAHAADKAGEGLLDYVAGQPD 87

[Close]

BLAST of Carg23540 vs. TrEMBL
Match: tr|A0A2P5F8A8|A0A2P5F8A8_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_100740 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.4e-17
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ +F+FH L AL LC+ + +LVL+APR ++++AYFWPLLLSTALFL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIALILCIVVSTLVLVAPRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 ASLPP-PDKTGEGLLNYVAG 80
           S PP  DK GEGLL+YVAG
Sbjct: 61 TSPPPAADKAGEGLLDYVAG 80

[Close]

BLAST of Carg23540 vs. TrEMBL
Match: tr|A0A218XLN4|A0A218XLN4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012054 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          M IP+ + K+R H L A+ L L+L  LVLLAPR ++L+AYFWPL LSTALFL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLD 83
           S P PDK GEGLL+YVAG  D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

The following BLAST results are available for this feature:

BLAST of Carg23540 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56016.1	3.9e-26	78.02	hypothetical protein Csa_3G047770 [Cucumis sativus]	[more]
XP_007212293.1	2.3e-18	63.29	uncharacterized protein LOC18778362 [Prunus persica] >ONI13735.1 hypothetical pr...	[more]
XP_008244582.1	2.3e-18	63.29	PREDICTED: uncharacterized protein LOC103342721 [Prunus mume]	[more]
XP_021818033.1	2.3e-18	63.29	uncharacterized protein LOC110760142 [Prunus avium]	[more]
PQP93868.1	2.3e-18	63.29	uncharacterized protein Pyn_25186 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Carg23540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	6.7e-12	44.30	unknown protein	[more]
AT3G13175.1	1.2e-08	39.62	unknown protein	[more]

BLAST of Carg23540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7E9\|A0A0A0L7E9_CUCSA	2.6e-26	78.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
tr\|M5WI68\|M5WI68_PRUPE	1.5e-18	63.29	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
tr\|A0A2P6QFZ6\|A0A2P6QFZ6_ROSCH	2.6e-18	62.07	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4...	[more]
tr\|A0A2P5F8A8\|A0A2P5F8A8_9ROSA	6.4e-17	63.75	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_100740 PE=4 S...	[more]
tr\|A0A218XLN4\|A0A218XLN4_PUNGR	1.4e-16	60.98	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012054 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23540-RA	Carg23540-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125:SF1	SUBFAMILY NOT NAMED	coord: 1..80
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23540	Cla004457	Watermelon (97103) v1	carwmB0010
Carg23540	Csa3G047770	Cucumber (Chinese Long) v2	carcuB0008
Carg23540	ClCG10G004230	Watermelon (Charleston Gray)	carwcgB0008
Carg23540	CSPI03G04060	Wild cucumber (PI 183967)	carcpiB0008
Carg23540	CmaCh16G009680	Cucurbita maxima (Rimu)	carcmaB0012
Carg23540	CmaCh06G006800	Cucurbita maxima (Rimu)	carcmaB0013
Carg23540	CmoCh16G010090	Cucurbita moschata (Rifu)	carcmoB0012
Carg23540	Lsi05G004920	Bottle gourd (USVL1VR-Ls)	carlsiB007
Carg23540	Cp4.1LG08g08200	Cucurbita pepo (Zucchini)	carcpeB0011
Carg23540	CsGy3G004050	Cucumber (Gy14) v2	carcgybB0007
Carg23540	CsaV3_3G004060	Cucumber (Chinese Long) v3	carcucB0008
Carg23540	Cla97C10G188700	Watermelon (97103) v2	carwmbB0007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23540	Wax gourd	carwgoB0009
Carg23540	Cucumber (Gy14) v1	carcgyB0007
Carg23540	Cucurbita moschata (Rifu)	carcmoB0013
Carg23540	Cucurbita pepo (Zucchini)	carcpeB0010
Carg23540	Melon (DHL92) v3.5.1	carmeB0006
Carg23540	Melon (DHL92) v3.6.1	carmedB0007