CsaV3_3G004060 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G004060
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transmembrane protein
Location	chr3 : 3453664 .. 3454823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTAATCAAGTGACATAAAATTAAAGGTAATTTGGAAGTACGGTATAAAATATTAAAGAAGGTATAATATAATAAAGAGTAAAAAAGAAAAGAAGAAAAAGAGAATTACCCATTTCTCCCTTTCCTAAACAAAACATAACATTTTAGCCTCAACCCTCAGTCAGGGAATCTCTGAACGGGAAAAGAAAAAAGAACAAAAAAAGGTGAAATTGAGTTCGGGTTTTGTTGATCATCGTCTTGATTCTTGATTTGATTTCAATTTGATCCATCCATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAAGTCAATCAAATCCATCATACACGGTTCTTTTTCTCTTCTTTCTCTACTACTTACTACTTACTACTTCTCAATCTAAATCCTCGTAAATCAATTATTATTAATTACTCTAATTTTTCTTTTACTTAATAACCGCTTTTTCTCTAATCCATTCCCCTCCAAATCTCCGATCTGATGTCATGAATATGAACATATATATGTCTCTGTTTTGTACTTTTTGTAATTTAATTTCTTGAGATCCATTACTGGTAGTGTGTGTTTAGATGAATCGCTATGTGGTTTTTTTGTTTTGTTTCTGCTGGTTATGAATTTCGATTGATGATTCGATGAATTTCGATAAGAAGATGAAGTGAAAGGTTGTGCTGAATCGACTTGGAGAGTGAAAGGGGAAATTTGATGTGTTTGTTCTTTTTCTTTTGGGGTTAAATTTATGGGATTAGCGTTTAATAATTTGTACGTACGGATGGGTTTTTCTTTTTTAATATTGCTAAATTTGATATATTATAATTAAACTCATTATAATTTTGCACTTTTCTTTAAAAAATTAAAATCCTTTTCTAAAAGGGACACTTTCAAAATATTTACATTAGTATAAGTATGACGAAAATTAAGGCA

mRNA sequence

ATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAA

Coding sequence (CDS)

ATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAA

Protein sequence

MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFANTSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD

Homology

[Close]

BLAST of CsaV3_3G004060 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_3G047770 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-37
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
          TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CsaV3_3G004060 vs. NCBI nr
Match: OWM85804.1 (hypothetical protein CDL15_Pgr012054 [Punica granatum] >PKI77517.1 hypothetical protein CRG98_002123 [Punica granatum])

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          M IP+ ++K+R HILV +ILSL+L  L LLAP F++LLAYFWPLFLSTALFL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHD 83
          TS P+PDKA EGLL YVAG  D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

[Close]

BLAST of CsaV3_3G004060 vs. NCBI nr
Match: RDX71417.1 (hypothetical protein CR513_49244, partial [Mucuna pruriens])

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 58/89 (65.17%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP KV+KFRFH L  L+  LTLFSL L+AP F++LLAYFWPLFLSTA+ L  V  FA 
Sbjct: 1  MEIPEKVLKFRFHFLGALLFCLTLFSLILMAPRFITLLAYFWPLFLSTAVVLALVFFFAK 60

Query: 61 TS-LPSPD-----KAAEGLLSYVAGHHDL 84
          TS LPS D      A +GLL YVAGHHDL
Sbjct: 61 TSPLPSADATSFHNAGQGLLDYVAGHHDL 89

[Close]

BLAST of CsaV3_3G004060 vs. NCBI nr
Match: XP_007212293.1 (uncharacterized protein LOC18778362 [Prunus persica] >ONI13735.1 hypothetical protein PRUPE_4G242100 [Prunus persica])

HSP 1 Score: 95.9 bits (237), Expect = 7.6e-17
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K++KF+FH L  LIL LTL+++ L+AP FL++LAYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKS 91
          T+LP  + + EGLL YVAG  +    S KS
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVESYKS 90

[Close]

BLAST of CsaV3_3G004060 vs. NCBI nr
Match: XP_008244582.1 (PREDICTED: uncharacterized protein LOC103342721 [Prunus mume])

HSP 1 Score: 95.9 bits (237), Expect = 7.6e-17
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K++KF+FH L  LIL LTL+++ L+AP FL++LAYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYTITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKS 91
          T+LP  + + EGLL YVAG  +    S KS
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVESYKS 90

[Close]

BLAST of CsaV3_3G004060 vs. TAIR10
Match: AT4G16400.1 (unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1   MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
           MEI +K+M++RFH +VT+++S+ + SL   AP  L++LAYFWPLF STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPSPDKAAEGLLSYVAGH-HDLDSSSLKSD 92
               S +   E L+ YVAG   D   ++L+ D
Sbjct: 182 FQQLSEEATGERLMDYVAGRPEDSHKNNLRDD 213

[Close]

BLAST of CsaV3_3G004060 vs. TAIR10
Match: AT3G13175.1 (unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          ME   K++KF+  I+   +LSL   +L   +P FL++L+YFWPLFLSTALFL AV  FA 
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 TS-LPSPDK-----------AAEGLLSYVAG--HHDL 84
          TS LP               AAEG+L YV G  H D+
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDI 97

[Close]

BLAST of CsaV3_3G004060 vs. TrEMBL
Match: tr|A0A0A0L7E9|A0A0A0L7E9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
          TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CsaV3_3G004060 vs. TrEMBL
Match: tr|A0A218XLN4|A0A218XLN4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012054 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          M IP+ ++K+R HILV +ILSL+L  L LLAP F++LLAYFWPLFLSTALFL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHD 83
          TS P+PDKA EGLL YVAG  D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

[Close]

BLAST of CsaV3_3G004060 vs. TrEMBL
Match: tr|A0A2N9IPE7|A0A2N9IPE7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55289 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP+ ++K++FH L  LILSL+L +LF +AP FL++LAYFWPLFLSTALFL AVL+F  
Sbjct: 1  MEIPANLLKYKFHFLFALILSLSLTTLFFIAPRFLTILAYFWPLFLSTALFLFAVLVFGK 60

Query: 61 TSLPSP----DKAAEGLLSYVAGH 81
          TS+P+     DKAA+GLL YVAGH
Sbjct: 61 TSVPATEPPGDKAAKGLLDYVAGH 84

[Close]

BLAST of CsaV3_3G004060 vs. TrEMBL
Match: tr|M5WI68|M5WI68_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.0e-17
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K++KF+FH L  LIL LTL+++ L+AP FL++LAYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKS 91
          T+LP  + + EGLL YVAG  +    S KS
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEHVVESYKS 90

[Close]

BLAST of CsaV3_3G004060 vs. TrEMBL
Match: tr|A0A2P6QFZ6|A0A2P6QFZ6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP K++KF++H L  LI  LTL+SL L AP FL++LAYFWPLFLSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLCALIFCLTLYSLALFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLP-----SPDKAAEGLLSYVAGHHD 83
          TSLP     + DKA EGLL YVAG  D
Sbjct: 61 TSLPGTDAHAADKAGEGLLDYVAGQPD 87

The following BLAST results are available for this feature:

BLAST of CsaV3_3G004060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56016.1	2.3e-37	100.00	hypothetical protein Csa_3G047770 [Cucumis sativus]	[more]
OWM85804.1	4.0e-18	67.07	hypothetical protein CDL15_Pgr012054 [Punica granatum] >PKI77517.1 hypothetical ...	[more]
RDX71417.1	3.4e-17	65.17	hypothetical protein CR513_49244, partial [Mucuna pruriens]	[more]
XP_007212293.1	7.6e-17	58.89	uncharacterized protein LOC18778362 [Prunus persica] >ONI13735.1 hypothetical pr...	[more]
XP_008244582.1	7.6e-17	58.89	PREDICTED: uncharacterized protein LOC103342721 [Prunus mume]	[more]

BLAST of CsaV3_3G004060 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	1.2e-11	43.48	unknown protein	[more]
AT3G13175.1	5.8e-11	46.39	unknown protein	[more]

BLAST of CsaV3_3G004060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G004060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7E9\|A0A0A0L7E9_CUCSA	1.5e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
tr\|A0A218XLN4\|A0A218XLN4_PUNGR	2.7e-18	67.07	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012054 PE=4 SV=1	[more]
tr\|A0A2N9IPE7\|A0A2N9IPE7_FAGSY	1.7e-17	64.29	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55289 PE=4 SV=1	[more]
tr\|M5WI68\|M5WI68_PRUPE	5.0e-17	58.89	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]
tr\|A0A2P6QFZ6\|A0A2P6QFZ6_ROSCH	6.6e-17	63.22	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G004060.1	CsaV3_3G004060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..80
None	No IPR available	PANTHER	PTHR34125:SF1	SUBFAMILY NOT NAMED	coord: 1..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G004060	CSPI03G04060	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G004060	CmaCh16G009680	Cucurbita maxima (Rimu)	cmacucB0381
CsaV3_3G004060	CmaCh06G006800	Cucurbita maxima (Rimu)	cmacucB0975
CsaV3_3G004060	CmoCh16G010090	Cucurbita moschata (Rifu)	cmocucB0378
CsaV3_3G004060	Cp4.1LG08g08200	Cucurbita pepo (Zucchini)	cpecucB1047
CsaV3_3G004060	CsGy3G004050	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G004060	Carg26822	Silver-seed gourd	carcucB0004
CsaV3_3G004060	Carg23540	Silver-seed gourd	carcucB0008
CsaV3_3G004060	Cla004457	Watermelon (97103) v1	cucwmB210
CsaV3_3G004060	ClCG10G004230	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G004060	Lsi05G004920	Bottle gourd (USVL1VR-Ls)	cuclsiB217

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G004060	Wax gourd	cucwgoB328
CsaV3_3G004060	Wax gourd	cucwgoB223
CsaV3_3G004060	Cucumber (Gy14) v1	cgycucB017
CsaV3_3G004060	Cucurbita maxima (Rimu)	cmacucB0659
CsaV3_3G004060	Cucurbita moschata (Rifu)	cmocucB0961
CsaV3_3G004060	Cucurbita pepo (Zucchini)	cpecucB0256
CsaV3_3G004060	Cucurbita pepo (Zucchini)	cpecucB0342
CsaV3_3G004060	Bottle gourd (USVL1VR-Ls)	cuclsiB175
CsaV3_3G004060	Melon (DHL92) v3.5.1	cucmeB246
CsaV3_3G004060	Melon (DHL92) v3.6.1	cucmedB231
CsaV3_3G004060	Watermelon (97103) v2	cucwmbB182