Cp4.1LG08g08200 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g08200
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane protein, putative
Location	Cp4.1LG08 : 6600719 .. 6600991 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTTGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTTCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTATGTCGCCGGACACCTCGACCTTGACGCCTCGCTCAAGACTGATTAA

mRNA sequence

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTTGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTTCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTATGTCGCCGGACACCTCGACCTTGACGCCTCGCTCAAGACTGATTAA

Coding sequence (CDS)

ATGGAGATCCCTAGCAAAGTGTGGAAGTTCAGATTCCATTTCTTGGCTGCTCTAACTCTATGCCTTACACTCTTCTCCCTCGTCCTCCTCGCTCCTAGATTGCTCTCTCTTGTCGCCTACTTTTGGCCTCTCCTCCTCTCCACCGCGCTCTTCCTCCTCGCTGTCCTTCTCTTCGCCAACGCCTCTCTCCCGCCGCCGGATAAAACCGGCGAAGGCCTTCTCAACTATGTCGCCGGACACCTCGACCTTGACGCCTCGCTCAAGACTGATTAA

Protein sequence

MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFANASLPPPDKTGEGLLNYVAGHLDLDASLKTD

Homology

[Close]

BLAST of Cp4.1LG08g08200 vs. TrEMBL
Match: A0A0A0L7E9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of Cp4.1LG08g08200 vs. TrEMBL
Match: M5WI68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013921mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.3e-19
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Cp4.1LG08g08200 vs. TrEMBL
Match: A0A0S3RJA5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G018900 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-17
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          ME+  K++KFR+HFL AL  CLT+FSL ++APR L+L+AYFWPL LSTAL    V   A 
Sbjct: 1  MEVQEKLFKFRYHFLGALLFCLTIFSLTIMAPRFLTLLAYFWPLFLSTALVFALVFFIAR 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGHLDLDASLK 89
           S LPP D T     G+GLL+YVAGH DL +  +
Sbjct: 61 TSHLPPSDATSLYSAGQGLLDYVAGHHDLPSDTR 94

[Close]

BLAST of Cp4.1LG08g08200 vs. TrEMBL
Match: A0A0L9UV50_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g012300 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.8e-17
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          ME+  K++KFR+HFL AL  CLT+FSL ++APR L+L+AYFWPL LSTAL    V   A 
Sbjct: 1  MEVQEKLFKFRYHFLGALLFCLTIFSLTIMAPRFLTLLAYFWPLFLSTALVFALVFFIAR 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGHLDLDASLK 89
           S LPP D T     G+GLL+YVAGH DL +  +
Sbjct: 61 TSHLPPSDATSLYSAGQGLLDYVAGHHDLPSDTR 94

[Close]

BLAST of Cp4.1LG08g08200 vs. TrEMBL
Match: V7BC13_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G278500g PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-16
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEI  +V KFR+HFL AL LCLTLFSL+L+APR ++L+AYF PL LSTAL L  V +FA 
Sbjct: 1  MEIQEQVLKFRYHFLGALLLCLTLFSLILMAPRFITLLAYFCPLFLSTALVLALVFVFAK 60

Query: 61 AS-LPPPDKT-----GEGLLNYVAGHLDL 84
           S LP  D T     G+GLLNYVAGH DL
Sbjct: 61 TSPLPSSDATSLHSAGQGLLNYVAGHHDL 89

[Close]

BLAST of Cp4.1LG08g08200 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.7e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
           MEI +K+ ++RFHF+  + + + + SLV  APR+L+++AYFWPL  STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  ASLPPPDKTGEGLLNYVAG 80
                 + TGE L++YVAG
Sbjct: 182 FQQLSEEATGERLMDYVAG 200

[Close]

BLAST of Cp4.1LG08g08200 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 1


Query: 1   MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
           ME   K+ KF+   + A  L L   +LV  +P  L++++YFWPL LSTALFL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  ASLPPPDKT------------GEGLLNYVAG--HLDL--DASLKTD 91
            S  P   T             EG+L+YV G  H D+  D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

[Close]

BLAST of Cp4.1LG08g08200 vs. NCBI nr
Match: gi|659096311|ref|XP_008449026.1| (PREDICTED: uncharacterized protein LOC103491022 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-27
Identity = 72/92 (78.26%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD--ASLKTD 91
           SLPPPDK  EGLL+YVAGH DLD  +SLK+D
Sbjct: 61 TSLPPPDKAAEGLLSYVAGHHDLDSSSSLKSD 92

[Close]

BLAST of Cp4.1LG08g08200 vs. NCBI nr
Match: gi|700200883|gb|KGN56016.1| (hypothetical protein Csa_3G047770 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 91
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of Cp4.1LG08g08200 vs. NCBI nr
Match: gi|645279171|ref|XP_008244582.1| (PREDICTED: uncharacterized protein LOC103342721 [Prunus mume])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYTITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Cp4.1LG08g08200 vs. NCBI nr
Match: gi|595880790|ref|XP_007212293.1| (hypothetical protein PRUPE_ppa013921mg [Prunus persica])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF+FHFL AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLPPPDKTGEGLLNYVAG 80
           +LP  + +GEGLL+YVAG
Sbjct: 61 TTLPVTEASGEGLLDYVAG 79

[Close]

BLAST of Cp4.1LG08g08200 vs. NCBI nr
Match: gi|764543091|ref|XP_011459287.1| (PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+ KF++HFL+AL  CLTL+SL L APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLSALIFCLTLYSLTLFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 ASLP----PPDKTGEGLLNYVAGHLD 83
           SLP      DK GEGLL+YVAG  D
Sbjct: 61 TSLPGSDSHADKAGEGLLDYVAGQPD 86

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g08200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9_CUCSA	1.4e-26	78.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047770 PE=4 SV=1	[more]
M5WI68_PRUPE	8.3e-19	63.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013921mg PE=4 SV=1	[more]
A0A0S3RJA5_PHAAN	7.8e-17	55.32	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G018900 PE=...	[more]
A0A0L9UV50_PHAAN	7.8e-17	55.32	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g012300 PE=4 SV=1	[more]
V7BC13_PHAVU	1.0e-16	62.92	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G278500g PE=4 SV=1	[more]

BLAST of Cp4.1LG08g08200 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	6.7e-12	44.30	unknown protein	[more]
AT3G13175.1	1.2e-08	39.62	unknown protein	[more]

BLAST of Cp4.1LG08g08200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096311\|ref\|XP_008449026.1\|	3.1e-27	78.26	PREDICTED: uncharacterized protein LOC103491022 [Cucumis melo]	[more]
gi\|700200883\|gb\|KGN56016.1\|	2.0e-26	78.02	hypothetical protein Csa_3G047770 [Cucumis sativus]	[more]
gi\|645279171\|ref\|XP_008244582.1\|	1.2e-18	63.29	PREDICTED: uncharacterized protein LOC103342721 [Prunus mume]	[more]
gi\|595880790\|ref\|XP_007212293.1\|	1.2e-18	63.29	hypothetical protein PRUPE_ppa013921mg [Prunus persica]	[more]
gi\|764543091\|ref\|XP_011459287.1\|	1.6e-18	62.79	PREDICTED: uncharacterized protein LOC101294242 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08200.1	Cp4.1LG08g08200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..80 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g08200	CmaCh06G006800	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g08200	Cla004457	Watermelon (97103) v1	cpewmB834
Cp4.1LG08g08200	ClCG10G004230	Watermelon (Charleston Gray)	cpewcgB766
Cp4.1LG08g08200	Lsi05G004920	Bottle gourd (USVL1VR-Ls)	cpelsiB717
Cp4.1LG08g08200	CsaV3_3G004060	Cucumber (Chinese Long) v3	cpecucB1047
Cp4.1LG08g08200	Carg23540	Silver-seed gourd	carcpeB0011

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g08200	Cucurbita pepo (Zucchini)	cpecpeB251
Cp4.1LG08g08200	Cucumber (Gy14) v1	cgycpeB0028
Cp4.1LG08g08200	Cucumber (Gy14) v1	cgycpeB0029
Cp4.1LG08g08200	Cucurbita maxima (Rimu)	cmacpeB365
Cp4.1LG08g08200	Cucurbita moschata (Rifu)	cmocpeB329
Cp4.1LG08g08200	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g08200	Wild cucumber (PI 183967)	cpecpiB852
Cp4.1LG08g08200	Wild cucumber (PI 183967)	cpecpiB870
Cp4.1LG08g08200	Cucumber (Chinese Long) v2	cpecuB850
Cp4.1LG08g08200	Cucumber (Chinese Long) v2	cpecuB868
Cp4.1LG08g08200	Bottle gourd (USVL1VR-Ls)	cpelsiB720
Cp4.1LG08g08200	Watermelon (Charleston Gray)	cpewcgB778
Cp4.1LG08g08200	Watermelon (97103) v1	cpewmB828
Cp4.1LG08g08200	Melon (DHL92) v3.5.1	cpemeB811
Cp4.1LG08g08200	Melon (DHL92) v3.5.1	cpemeB814
Cp4.1LG08g08200	Cucumber (Gy14) v2	cgybcpeB445
Cp4.1LG08g08200	Cucumber (Gy14) v2	cgybcpeB461
Cp4.1LG08g08200	Melon (DHL92) v3.6.1	cpemedB948
Cp4.1LG08g08200	Melon (DHL92) v3.6.1	cpemedB954
Cp4.1LG08g08200	Cucumber (Chinese Long) v3	cpecucB1064
Cp4.1LG08g08200	Wax gourd	cpewgoB1074
Cp4.1LG08g08200	Wax gourd	cpewgoB1094