CmaCh05G007150 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G007150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Poly(RC)-binding protein 3
Location	Cma_Chr05 : 3823852 .. 3834362 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCCTTTTCTCTTCATTTTCTTAAAACCTCTGCAACTCTTAACCCTAACTCAATAGACTCTTCATCTTTCTCGATGGCCACCAACACAGCTACGGATAATGGCTCCACTGATGCCAACGCCCTCAATTTCAACCCCGAAAGCTCCCCACTTGCCTCCGTAGCGGCTGCAGAACCAGACTCTATGGAAGCCGGTGGCGCTGAATCCGACCTCGATCCCTCTAACCAAGACTACTTGTCTGCTCCGGCTTCGGATTCTGCAGACCATGATGAAAGCCCCAACCATACCGACGCTTCCGATAAAAAGTGGCCCGGATGGCCCGGAGACTGCGTGTTTCGGCTTATTGTACCGGTCGTTAAAGTTGGAAGCATTATTGGGCGCAAGGGCGATCTTATCAAGAAGATGTGCGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGTGTTGTGAGTGTTTTTTTAACCTGACCTCTCTCTGGTACCTGTTTTTTTTTTTTCGAGTCAAAAGCAATCTCCATTTTTGGTTCCCGAGGTTTCGGGGGAAAAAAGAGAGATCATTCTCCCATCATTGGTTGGTTCCATGAATTTCACAATAGTTTGTAATAACAAGTTATTTTCTAATTCTTTCACAAAAGCCGCAACTCTGTTTGATATTAGGTTAACTAGAATATCAATTGAACTTATTGGGGAACAAAAGGAGCTTATGTTAAACCTTTTTTTGGTTGTTCAATTGAAGCTTGATCTATAATGGAGGAGGTGCTTCTGAATTCTTCCTTTAGGGAGAAGTTCTAGCTTTTGTGCAATTTTGTGGGACAATTGGTGCGAGTGGAATAATAGAATCTTTAGAGAGGTGGAGAGATCAGGTGGGGAGGTTTAGGAGGTGGCTATGTTTGATGCCTCCTTGGTTGTGTCTTTCACTACGTCTTTTATACTTATGAGCTTGGTCTTATTCTTTTGGATTTGAGCCCTTTTCTGTAGTTAGGGTTAAGACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTTGTTTTTGCATGCACTTGTATATTCTTTCATTTCTATTAACAGAAGCGTGATTTCCGTCCATTTTTCTTGGAAGATTAATTCTTTGTACATTGGTTTGAAATGCAGATGTAAGTTCTTATATTTTTTAAGAACATGACAACTTGATATCGTTCTTTGAGTCACTTCTTTAGGAGTAAAAACTTGAAGCATTTTCCATGGTGGCATAAGCCTCTTATAACTCAAAGTAGGCGTAATTTTGTAATTTTTGTTAGGCTTGATTTTTATGGAGTGGAGTTTTTGTGTGTATGTATTTAGTCTAGATCTTGTTTTGGCTTCTTTTATTGGGCTGTCTTTTTTTCTTTTTTCTTTTATACTTTTGTATCATTTCAATTTTCTCAATGAAAGCTCTGTTCTCCATAGAGAAAAAAATCCAATACTTGAGGCCAAATATGACTGTAATCTGACTATTAACTTCCATAAAGAATGTTTTTTTCTGTAGGTTGTTTTTAACTTCATTTTGTATATTGACCAGGCACTTCTTGATTGTCCTGTAAATTTTAGAAGATGTTGACATGTAATTGGATTTTTTAGACTATACACTGTACTTTCAGGAGCGCCCAAATGATTTTGATTAGGTTCAATGAAGAACTGTAATATATAGAAGAGAGGCATAGCTTTTCCTTAAGAGGCTGTTGCAATTACGTTTTAATTCTGTGATGCTTCACTTTGATTTGCAAGAACACTTGGATGCATTTTTGGTAATTTCTTTCAAGTAGTAGGTCTTGTTCAAACTTGTACGATCAGTTTTTAATGTTTGAAGTTTACTTCAGGTGCTAATTTCAGGAAAAGAAGACCCTGAGGCACCCCTTTCCCCTGCTATGGATGCAGTTATAAGAGTCTTCAAACGTGTGTTCTTATTTTCTGAGAATGAAGACGAGGCTAAAACTTCATTTTGTTCAATTCGGCTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATAAAATCTATACAGGAGAGTACAGGAGCCTCTATAAGAGTATTATCAGGAGGTATGCGTTCATTTTCTGTTATGCACTTGCCATTCTCTTTTATTGATTGATTTTGAGCCTAGCTGTACTGTTTTCAAAGATCAGGAAATCTACCAGATAGCTAAGTTATAGAGTATCAGAAAGGCTGTTATTTAGAGAAAGGCAGATAAGTGCACCCTCCAAAACCTTTCTGCAAGAGAAGGATCATTCTAAAGACTAATAATGCCACAAAAAATCCAAGGAATCAATAGAAGACCCCCGTTATTGTGAGAAATGCAAATGGGTCTGATAAAAGTCTGTCCAGCGTACTAAAAGCTTTGATTTTGGCAAGAGAACAATATCCCGAGCATTATTAACTTTAGTGTTTTTGATAAGATACCCCATGACCCTTATTCCTAAACCCTTTTCATTTTAGTCCAATTTCGTATTGATCAGTTATTCGACTAGAGAAGTGATTCGGTTAGGAAGAATTGCTTGTTTTCACCCATAATTTTGGGATCAAATGTTCGGAAGAAGTGGAAATTTGGGATGTCTCATTGCAAGATTGCAACCTCAACAGTTGTGCTGTGTAAGAGTTAAGTTTGATAGTGCATAGAGACAGGGTACTGATAGAGCGGTGCTCGGCCCCTTTCCATATAAATAATTAGAGTCTCTTATTGAAAGAGCAGTGTCCCAATGACTAGATAGCAAGTACTTGAAGAAAATATCAATAAGAATCACTAGCCTTAATAGGGATCACATTTTTACCTTTTACCATTGAGCTAAATGTACCTTCCCTTTTTTCCCTAAAGAAAAGCCTCTTCTTTAAAAGATACGCAGGTATATATCCACAGAAATTGATCTTATGTTTTCCATCTTGATATTTCCTACAAGACTCCAGAGCTCCATGGTCTCTCTAGCTCGCACTCACTGTCTGCCAAGCTTCCAGCTAATTCTTGTTGCTCATTTCACATGGCAATGATCGCCCGTTATCGTCGTTTAATCCTTTGGGGTTATTGAATGTGCACACACACTTGGTGACCTACAAGCCTTGTCTTGTTTTTTGAGTTCAATGATGTGTGGGGATGATGATTTGAACTTTTGACTTTTTGGTCGAGGTGATAATGCCTAAATCAGTTTAGTTATTGCCAGGTTAGCAGTAGTCTTGTCACCACACATGTGAACTTGATTGATATAGGTGGCATGCCCAACGAGTGTCATGCTGACTTAGCATATTACTGTCCACATCGCACATGGTCAGTTAACCTTGTTGACATCACCATGAGACATCGGATTCACCCTTTGCTAGTGATTAAAAGGTGTGTGCTTATGCAGCATAAGTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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AATTAGAGTAATGTTTACATATTTACGATTCTTTTTGGCTTGTAGGAAGCAGTAAGTGCTCCTAAGGAACCAGTGACAAGCAGCAGCTATGGCAGGCTAGAGGCCTCAGGCATGAGGTCATCTTACTCCCAGTTGGATGCTTCAGGTTCATCCTATACTTCATCCTCTTTATCTTCACAATTATATGGTGGATATGGATCTTCTGGTTTAGGAGGCTACAGTACCTTCAGGCTCTGAACTGATTGATCTGCAGATTCGTACCCACTCGGATTTTATCCGCCTCGGATTAATTCTTGTTAAGATAACGGATGAATTATTTTGGAACGTAGTCGTTGTAAAGTCAGCCTAAAGTAGTTAAAAGCGTTTTTATTACCCTCTCTGGCATATTGAATCTGATTCAGATGGGTAGATTTGTCTTGTGTTTTCTTTTTCAGTGTTAATGTGTTTGTTTTTAGGTTTGTTTAATCAATCGCTTGAGGTCCTCAAATTTTCAGGACATTTTTTTTCCCAG

mRNA sequence

CTTTTCCTTTTCTCTTCATTTTCTTAAAACCTCTGCAACTCTTAACCCTAACTCAATAGACTCTTCATCTTTCTCGATGGCCACCAACACAGCTACGGATAATGGCTCCACTGATGCCAACGCCCTCAATTTCAACCCCGAAAGCTCCCCACTTGCCTCCGTAGCGGCTGCAGAACCAGACTCTATGGAAGCCGGTGGCGCTGAATCCGACCTCGATCCCTCTAACCAAGACTACTTGTCTGCTCCGGCTTCGGATTCTGCAGACCATGATGAAAGCCCCAACCATACCGACGCTTCCGATAAAAAGTGGCCCGGATGGCCCGGAGACTGCGTGTTTCGGCTTATTGTACCGGTCGTTAAAGTTGGAAGCATTATTGGGCGCAAGGGCGATCTTATCAAGAAGATGTGCGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGTGTTGTGCTAATTTCAGGAAAAGAAGACCCTGAGGCACCCCTTTCCCCTGCTATGGATGCAGTTATAAGAGTCTTCAAACGTGTGTTCTTATTTTCTGAGAATGAAGACGAGGCTAAAACTTCATTTTGTTCAATTCGGCTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATAAAATCTATACAGGAGAGTACAGGAGCCTCTATAAGAGTATTATCAGGAGATGAGATGCCATTCTATGCTGGTGCAGACGAGAGAATGGTTGAATTGCAGGGAGAATCCTTGAAGGTTCTCAAGGCCCTAGAGGCAGTGGTGGGCCACTTAAGGAAGTTTTTAGTCGATCGTAGTGTTCTTCCTCTGTTTGAAAAGAGTTTTAATACACCTCCCTCACAAGATCGCCAAATGGATGCCTGGGCTGACAAGTCCTCACTTCTTACTGCATCTCAAAGTGTGATCTCTGCCGAGTATCCTTCATCTACAAAAAGAGAATCCCTATATCTTGACCGAGAAGCTTATCTTGATTCTTATATTCCGTCCTCTGGTATTTCTTTATATGGGCAAGATCGAGTACTTCCTACAATTCGATCATCGGGTGTTGGTCGCTCTGGGGGACCTATTGTAACTCAGGTTACTCAGACAATGCAGATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAACAAATATTGCATTCATCCGTCGCAATAGTGGTGCCATCTTAACCATACAAGAGAGCAGGGGATTACCTGACGAGATCACTGTGGAAATAAAGGGCACTTCATCACAAGTTCAGATGGCTCAACAATTAATTCAGGAAGCAGTAAGTGCTCCTAAGGAACCAGTGACAAGCAGCAGCTATGGCAGGCTAGAGGCCTCAGGCATGAGGTCATCTTACTCCCAGTTGGATGCTTCAGGTTCATCCTATACTTCATCCTCTTTATCTTCACAATTATATGGTGGATATGGATCTTCTGGTTTAGGAGGCTACAGTACCTTCAGGCTCTGAACTGATTGATCTGCAGATTCGTACCCACTCGGATTTTATCCGCCTCGGATTAATTCTTGTTAAGATAACGGATGAATTATTTTGGAACGTAGTCGTTGTAAAGTCAGCCTAAAGTAGTTAAAAGCGTTTTTATTACCCTCTCTGGCATATTGAATCTGATTCAGATGGGTAGATTTGTCTTGTGTTTTCTTTTTCAGTGTTAATGTGTTTGTTTTTAGGTTTGTTTAATCAATCGCTTGAGGTCCTCAAATTTTCAGGACATTTTTTTTCCCAG

Coding sequence (CDS)

ATGGCCACCAACACAGCTACGGATAATGGCTCCACTGATGCCAACGCCCTCAATTTCAACCCCGAAAGCTCCCCACTTGCCTCCGTAGCGGCTGCAGAACCAGACTCTATGGAAGCCGGTGGCGCTGAATCCGACCTCGATCCCTCTAACCAAGACTACTTGTCTGCTCCGGCTTCGGATTCTGCAGACCATGATGAAAGCCCCAACCATACCGACGCTTCCGATAAAAAGTGGCCCGGATGGCCCGGAGACTGCGTGTTTCGGCTTATTGTACCGGTCGTTAAAGTTGGAAGCATTATTGGGCGCAAGGGCGATCTTATCAAGAAGATGTGCGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGTGTTGTGCTAATTTCAGGAAAAGAAGACCCTGAGGCACCCCTTTCCCCTGCTATGGATGCAGTTATAAGAGTCTTCAAACGTGTGTTCTTATTTTCTGAGAATGAAGACGAGGCTAAAACTTCATTTTGTTCAATTCGGCTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATAAAATCTATACAGGAGAGTACAGGAGCCTCTATAAGAGTATTATCAGGAGATGAGATGCCATTCTATGCTGGTGCAGACGAGAGAATGGTTGAATTGCAGGGAGAATCCTTGAAGGTTCTCAAGGCCCTAGAGGCAGTGGTGGGCCACTTAAGGAAGTTTTTAGTCGATCGTAGTGTTCTTCCTCTGTTTGAAAAGAGTTTTAATACACCTCCCTCACAAGATCGCCAAATGGATGCCTGGGCTGACAAGTCCTCACTTCTTACTGCATCTCAAAGTGTGATCTCTGCCGAGTATCCTTCATCTACAAAAAGAGAATCCCTATATCTTGACCGAGAAGCTTATCTTGATTCTTATATTCCGTCCTCTGGTATTTCTTTATATGGGCAAGATCGAGTACTTCCTACAATTCGATCATCGGGTGTTGGTCGCTCTGGGGGACCTATTGTAACTCAGGTTACTCAGACAATGCAGATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAACAAATATTGCATTCATCCGTCGCAATAGTGGTGCCATCTTAACCATACAAGAGAGCAGGGGATTACCTGACGAGATCACTGTGGAAATAAAGGGCACTTCATCACAAGTTCAGATGGCTCAACAATTAATTCAGGAAGCAGTAAGTGCTCCTAAGGAACCAGTGACAAGCAGCAGCTATGGCAGGCTAGAGGCCTCAGGCATGAGGTCATCTTACTCCCAGTTGGATGCTTCAGGTTCATCCTATACTTCATCCTCTTTATCTTCACAATTATATGGTGGATATGGATCTTCTGGTTTAGGAGGCTACAGTACCTTCAGGCTCTGA

Protein sequence

MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASDSADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEPVTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL

Homology

[Close]

BLAST of CmaCh05G007150 vs. Swiss-Prot
Match: PEP_ARATH (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=1 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 2.0e-120
Identity = 250/456 (54.82%), Postives = 324/456 (71.05%), Query Frame = 1


Query: 54  LSAPASDSADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEE 113
           L+ P S +A     P+  D+++++WPGWPGDCVFR+IVPV KVG+IIGRKGD IKKMCEE
Sbjct: 43  LNQPDSLAAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEE 102

Query: 114 TRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDE----AK 173
           TRARI+VLDG V TPDR+VLISGKE+PEA +SPAMDAV+RVF+RV    +N+D+    A 
Sbjct: 103 TRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAG 162

Query: 174 TSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQG 233
           + F S+RLLVASTQAINLIGKQGSLIKSI E++GAS+R+LS +E PFYA  DER+V+LQG
Sbjct: 163 SVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQG 222

Query: 234 ESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWAD-KSSLLTASQSV 293
           E+LK+LKALEA+VGHLR+FLVD +V+PLFEK +    SQ RQ +  A+ KSSL T S ++
Sbjct: 223 EALKILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNL 282

Query: 294 ISAEYPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVT 353
           +  ++    +RE L+L+R++ +DS +  SG+S+Y QD VL    S G+ R     VTQV+
Sbjct: 283 MEPDFSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVS 342

Query: 354 QTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQ 413
           QTMQIP SYAEDIIGV G NIA+IRR SGA +TI+ES   PD+ITVEIKGT+SQVQ A+Q
Sbjct: 343 QTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQ 402

Query: 414 LIQEAVSAPKEPVT-SSSYGRLEASGM---------------------------RSSYSQ 473
           LIQE +   KEPV+ S  Y R+++  +                            ++YSQ
Sbjct: 403 LIQEFIINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYRPTAYSQ 462

Query: 474 LDASGSSYTSSSLSSQLYGG--YGSSGLGGYSTFRL 475
           L   G S  + +L+ Q YG     +S +GGYS++ L
Sbjct: 463 L--GGPSTYTPTLTGQTYGSEYRPASDVGGYSSYNL 495

[Close]

BLAST of CmaCh05G007150 vs. Swiss-Prot
Match: FLK_ARATH (Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.2e-73
Identity = 184/463 (39.74%), Postives = 257/463 (55.51%), Query Frame = 1


Query: 42  AESDLDPSNQDYLSAPASDSA---DHDESPNHTD--------ASDKKWPGWPGDCVFRLI 101
           A+ D+   N D +     D     +H ES   ++          +K+WPGWPG+ VFR++
Sbjct: 133 AQGDVQDHNGDEVQDKVEDEEGIPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRML 192

Query: 102 VPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDA 161
           VP  KVGSIIGRKGD+IKK+ EETRARI++LDG  GT +R V++SGKE+PE+ L P+MD 
Sbjct: 193 VPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDG 252

Query: 162 VIRVFKRVF--LFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRV 221
           ++RV  R+   L  E       S  S RLLV ++QA +LIGKQG  +K+IQE++   +RV
Sbjct: 253 LLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRV 312

Query: 222 LSGDEMPFYAGADERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQ 281
           L  +++P +A  D+R+VE+ GE   V +ALE +  HLRKFLVDRS++P FE     P  Q
Sbjct: 313 LGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPFFENQMQKPTRQ 372

Query: 282 DRQM----DAWADKSSLLTASQSVISAEYPSSTKRESLYLDREAYLDSYI---------- 341
              M     +W         + SV    Y  +      Y+      DSY           
Sbjct: 373 MDHMPPPHQSWGPPQG---HAPSVGGGGYGHNPPP---YMQPPPRHDSYYPPPEMRQPPM 432

Query: 342 ---PSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAF 401
              P  GIS YG++  +    +  V  +   +  QVTQ MQIPLSYA+ +IG  G+NI++
Sbjct: 433 EKQPHQGISAYGREPPM----NVHVSSAPPMVAQQVTQQMQIPLSYADAVIGTSGSNISY 492

Query: 402 IRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVS-----APKEPVTSSSY 461
            RR SGA +TIQE+RG+P E+TVE+ GT SQVQ A QLIQ  ++     AP +P T    
Sbjct: 493 TRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAEAGAPAPAQPQT---- 552

Query: 462 GRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGY 470
                +  +  Y+     GS Y ++  +    GGY +    GY
Sbjct: 553 ----VAPEQQGYNPYATHGSVYAAAPTNPP--GGYATDYSSGY 575

[Close]

BLAST of CmaCh05G007150 vs. Swiss-Prot
Match: PCBP3_MOUSE (Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-18
Identity = 94/336 (27.98%), Postives = 159/336 (47.32%), Query Frame = 1


Query: 88  RLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPA 147
           RL++   +VGSIIG+KG+ +KKM EE+ ARI + +G    P+R+V I+G  D    +  A
Sbjct: 49  RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPTDA---IFKA 108

Query: 148 MDAVIRVFKRVFLFSENEDEAKTSF-CSIRLLVASTQAINLIGKQGSLIKSIQESTGASI 207
              +   F+   + S +   A +    ++RL+V ++Q  +LIGK GS IK I+ESTGA +
Sbjct: 109 FAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 168

Query: 208 RVLSGDEMPFYAGADERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPP 267
           +V +GD +P    + ER V + G    +++ ++ +   + +     + +P   K  +TP 
Sbjct: 169 QV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV 228

Query: 268 SQDRQMDAWADKSSLLTASQSVISAEYPSS-TKRESLYLDREAY-----LDSYIPSSGIS 327
                   +A   +     Q  I   +P   TK   L + +  +      +   P   + 
Sbjct: 229 -------IFAGGQAYTIQGQYAIP--HPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLP 288

Query: 328 LYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAIL 387
           L+  +     +  S  G    P  +  T  + IP      IIG  GT I  IR+ SGA +
Sbjct: 289 LHSSEEAQNLMGQSS-GLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 348

Query: 388 TIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSA 417
            I  +     E  + I GT + + +AQ LI   +++
Sbjct: 349 KIANATEGSSERQITITGTPANISLAQYLINARLTS 363

[Close]

BLAST of CmaCh05G007150 vs. Swiss-Prot
Match: PCBP3_HUMAN (Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-18
Identity = 94/336 (27.98%), Postives = 159/336 (47.32%), Query Frame = 1


Query: 88  RLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPA 147
           RL++   +VGSIIG+KG+ +KKM EE+ ARI + +G    P+R+V I+G  D    +  A
Sbjct: 49  RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITGPTDA---IFKA 108

Query: 148 MDAVIRVFKRVFLFSENEDEAKTSF-CSIRLLVASTQAINLIGKQGSLIKSIQESTGASI 207
              +   F+   + S +   A +    ++RL+V ++Q  +LIGK GS IK I+ESTGA +
Sbjct: 109 FAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 168

Query: 208 RVLSGDEMPFYAGADERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPP 267
           +V +GD +P    + ER V + G    +++ ++ +   + +     + +P   K  +TP 
Sbjct: 169 QV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV 228

Query: 268 SQDRQMDAWADKSSLLTASQSVISAEYPSS-TKRESLYLDREAY-----LDSYIPSSGIS 327
                   +A   +     Q  I   +P   TK   L + +  +      +   P   + 
Sbjct: 229 -------IFAGGQAYTIQGQYAIP--HPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLP 288

Query: 328 LYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAIL 387
           L+  +     +  S  G    P  +  T  + IP      IIG  GT I  IR+ SGA +
Sbjct: 289 LHSSEEAQNLMGQSS-GLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 348

Query: 388 TIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSA 417
            I  +     E  + I GT + + +AQ LI   +++
Sbjct: 349 KIANATEGSSERQITITGTPANISLAQYLINARLTS 363

[Close]

BLAST of CmaCh05G007150 vs. Swiss-Prot
Match: HEN4_ARATH (KH domain-containing protein HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-17
Identity = 59/180 (32.78%), Postives = 98/180 (54.44%), Query Frame = 1


Query: 83  GDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISG------ 142
           G   FRL+ P+  VG++IG+ G++IK++ + T A+IRV +   G+PDRV+ I        
Sbjct: 45  GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104

Query: 143 ---------------KEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVAS 202
                          K++ E  +S A  A+I+VF+ +      E ++ T  C  RLL  S
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAA----EADSDTVVC--RLLTES 164

Query: 203 TQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEAV 242
           + A  +IGK G ++ SI++ TG  I +   + +P  A  D+ MVE++G ++ V KAL ++
Sbjct: 165 SHAGAVIGKGGQMVGSIRKETGCKISIRI-ENLPICADTDDEMVEVEGNAIAVKKALVSI 217

[Close]

BLAST of CmaCh05G007150 vs. TrEMBL
Match: A0A0A0LMH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G061550 PE=4 SV=1)

HSP 1 Score: 771.5 bits (1991), Expect = 5.8e-220
Identity = 418/474 (88.19%), Postives = 436/474 (91.98%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNT T+NGSTDA     NP SS L S+AAAEPDS EAG  +SD DPSNQDY S P SD
Sbjct: 1   MATNTTTENGSTDAIP---NPLSSTLPSLAAAEPDSTEAGDDDSDSDPSNQDYSSVPPSD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SA H+ S NHT  SDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SAAHEPS-NHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKE+ E+PLSPAMDAVIRVFKRV   SENEDEAK SFCSIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAGADERMVELQGESLKVLKALE 
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEG 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVD SVLPLFEKSFNTP SQDRQ + WADKSSLLTASQS+ISAEY  STKRE
Sbjct: 241 VVGHLRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYAPSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SL+LDREA+ DS+I SSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED
Sbjct: 301 SLFLDREAHFDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEP 420
           IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAV+APKEP
Sbjct: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEP 420

Query: 421 VTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRL+ +G+RSSYSQL ASGSS+TSSSLSSQ YGGYGSSGLGGY+TFRL
Sbjct: 421 VTSSSYGRLDTTGLRSSYSQLAASGSSFTSSSLSSQSYGGYGSSGLGGYTTFRL 470

[Close]

BLAST of CmaCh05G007150 vs. TrEMBL
Match: W9SIR6_9ROSA (Poly(RC)-binding protein 3 OS=Morus notabilis GN=L484_005636 PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 2.5e-159
Identity = 324/480 (67.50%), Postives = 375/480 (78.12%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNP---ESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAP 60
           MATN  T NG T A   +  P   +++  AS A  +    E G A  +    N +   AP
Sbjct: 1   MATNEPTANGVTKAPKSDSQPIPSDATAAASTANEKAPVTEPGHATGN---RNMESEPAP 60

Query: 61  ASDSADHDESPNHTDAS---DKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEET 120
             +S +   S   T A+   DKKW GWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEET
Sbjct: 61  PGESGEAPASNAGTTATTDADKKWLGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEET 120

Query: 121 RARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCS 180
           RARIRVLDGAVGTPDR+VLISGKE+PEA LSPAMDAVIRVFKRV   SENE  A  +FCS
Sbjct: 121 RARIRVLDGAVGTPDRIVLISGKEEPEAALSPAMDAVIRVFKRVSGLSENE-AAGVAFCS 180

Query: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKV 240
           IRLLVASTQAINLIGKQGSLIKSIQESTGAS+RVL+GDE+PFYA ADER+VELQGE LKV
Sbjct: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLTGDEVPFYAAADERIVELQGEGLKV 240

Query: 241 LKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYP 300
           LKALEAV+GHLRKFLVD SV+PLFEKS+N+  SQ+RQ+D WADKS L  ++Q+ +   YP
Sbjct: 241 LKALEAVIGHLRKFLVDHSVIPLFEKSYNSTISQERQVDTWADKSMLQASTQTGVGTNYP 300

Query: 301 SSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIP 360
            + KRE  +L+RE  L+  +PSSGIS+YGQD  LP IR +G GR+G PIVTQ+ QTMQIP
Sbjct: 301 ITAKREPYFLERETQLEPQLPSSGISMYGQDTSLPGIRPTGFGRAGAPIVTQIAQTMQIP 360

Query: 361 LSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAV 420
           LSYAEDIIG+ G+NIA+IRR SGAILT+QESRGLPDEITVEIKGTSSQVQ+AQQLIQE +
Sbjct: 361 LSYAEDIIGIEGSNIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQLAQQLIQEVI 420

Query: 421 SAPKEPVTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           +  KEPV SS YGR++ + +RS+YSQL +S    TS    S   GGYGSSGLGGYSTFRL
Sbjct: 421 NNHKEPVPSS-YGRIDTA-LRSNYSQLSSSYPPTTSLPPRSYSGGGYGSSGLGGYSTFRL 474

[Close]

BLAST of CmaCh05G007150 vs. TrEMBL
Match: F6GXK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00030 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 1.8e-157
Identity = 325/481 (67.57%), Postives = 375/481 (77.96%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MAT   T+    +  A +  P S P   ++     +  A  AES+  PS         S+
Sbjct: 1   MATTGTTEPAPVNGAAQS--PGSDPKTELSETPLSASNAATAESEQAPSEN-----LESE 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           S    E+     AS+KKWPGWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEETRARIRV
Sbjct: 61  STAPPETEAPAPASEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKT------SFCS 180
           LDGAVGT DR+VLISG+E+PEAPLSPAMDAVIRVFKRV   SE+E + K       +FCS
Sbjct: 121 LDGAVGTSDRIVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCS 180

Query: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKV 240
           IRLLVASTQAINLIGKQGSLIKSIQESTGAS+RVLSGDE+PFYA ADER+VELQGE+LKV
Sbjct: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEALKV 240

Query: 241 LKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYP 300
            KALEAVVGHLRKFLVD SVLPLFE+++N   SQDRQ D WADKS L   SQ+ + ++Y 
Sbjct: 241 QKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYS 300

Query: 301 SSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIP 360
              KRESLYLDRE  ++     SG+ +YGQ+  L  IRSSG+GR+G PIVTQ+ QTMQIP
Sbjct: 301 LPAKRESLYLDRETQMEH----SGLPMYGQEHGLSGIRSSGLGRAGAPIVTQIAQTMQIP 360

Query: 361 LSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAV 420
           LSYAEDIIG+GG NIA+IRR SGAILT+QESRGLPDEITVEIKGTSSQVQ AQQLIQE +
Sbjct: 361 LSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQTAQQLIQEFI 420

Query: 421 SAPKEPVTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLY-GGYGSSGLGGYSTFR 475
           S  KEPV  SSYG+++ SG+RSSYSQL    +SY+SSSLSSQ Y GGYGSSG+GGYS++R
Sbjct: 421 SNHKEPV-PSSYGKMD-SGLRSSYSQL--GNTSYSSSSLSSQPYGGGYGSSGVGGYSSYR 466

[Close]

BLAST of CmaCh05G007150 vs. TrEMBL
Match: M5XYS8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004405mg PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 1.4e-152
Identity = 332/523 (63.48%), Postives = 385/523 (73.61%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSME-AGGAESDLDPS-NQDYLSAPA 60
           MAT   T+NGS      +    +S   + +   P+S + A  A +D +P+ N +  S P 
Sbjct: 1   MATAQPTENGSAKVTEPDLQQPASETTTASITVPESDQTATTATADNNPNQNPEPDSGPQ 60

Query: 61  SDSADHDE----SPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEET 120
            +    +     S + T  +DK+WPGWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEET
Sbjct: 61  PEPGAQETTTTVSGDATSIADKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEET 120

Query: 121 RARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTS--- 180
           RARIRVLDGAVGTPDR+VLISG+E+PEAPLSPAMDAVIR+FKR+   +++E +AK S   
Sbjct: 121 RARIRVLDGAVGTPDRIVLISGREEPEAPLSPAMDAVIRIFKRISGLADSEGDAKVSGPA 180

Query: 181 ---FCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQ 240
              FCSIRLLVASTQAINLIGKQGSLIKSIQESTGAS+RVLSGDE+PFYA A+ER+VELQ
Sbjct: 181 GVAFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAAEERIVELQ 240

Query: 241 GESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSV 300
           GE+LKVLKA+EAVV HLRKFLVD SVLPLFEK++N   SQ+RQ D WADKS L TASQ+ 
Sbjct: 241 GEALKVLKAVEAVVAHLRKFLVDHSVLPLFEKTYNATISQERQPDTWADKSLLHTASQTG 300

Query: 301 ISAEYPSSTK-------RESLYLDREAYLDSYIPSSGISLYG------------------ 360
           +S  Y  S K       RE+          S +PS+GISLYG                  
Sbjct: 301 VSTNYSLSAKRESLFLDRETQLE-------SQLPSAGISLYGKDPSIYGKDPSIYGKDPS 360

Query: 361 ----------QDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIR 420
                     QD  L +IRSSG+GR G PIVTQ+ QTMQIPLSYAEDIIGV G+NIAFIR
Sbjct: 361 IYGQDPSIYGQDPSLSSIRSSGIGRPGAPIVTQIAQTMQIPLSYAEDIIGVEGSNIAFIR 420

Query: 421 RNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEPVTSSSYGRLEASG 475
           R+SGAILT+QESRGLPDEITVEIKGTSSQVQMAQQLIQE +++ KEPVT SSYGR++ +G
Sbjct: 421 RSSGAILTVQESRGLPDEITVEIKGTSSQVQMAQQLIQEVINSRKEPVT-SSYGRID-TG 480

[Close]

BLAST of CmaCh05G007150 vs. TrEMBL
Match: V4U0W5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008200mg PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 5.1e-152
Identity = 309/477 (64.78%), Postives = 371/477 (77.78%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MAT   TDNGS +    +  PE++   S    E ++    G+E+    +  D  + P S 
Sbjct: 1   MATAETTDNGSINLPEPDPQPETATTES-PTTESEAPPTIGSENTEHTTESDS-ALPQST 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
             D    P      +KKWPGWPG CVFR+IVPV+KVGSIIGRKG+LIKK CE+TRARI+V
Sbjct: 61  GPDAAAVPE-----EKKWPGWPGHCVFRMIVPVLKVGSIIGRKGELIKKTCEDTRARIKV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTS---FCSIRL 180
           LDG V +PDR+VLISGKE+PEAP+SPAMDA +RVFKRV    EN+ +AK S   FCS+RL
Sbjct: 121 LDGPVSSPDRIVLISGKEEPEAPVSPAMDAAVRVFKRVSGLPENDVDAKASGAAFCSVRL 180

Query: 181 LVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKA 240
           LV STQAINLIGKQGSLIKSIQE++GAS+RVLS DE PFY   DER+VE+QGE+ KVLKA
Sbjct: 181 LVPSTQAINLIGKQGSLIKSIQENSGASVRVLSSDEAPFYVTEDERIVEMQGEAAKVLKA 240

Query: 241 LEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSST 300
           LEAVVGHLRKFLVD+ VLPLFEK++N   SQ+RQ++ WADKSSL  A+QS IS EY  ST
Sbjct: 241 LEAVVGHLRKFLVDQGVLPLFEKTYNASISQERQVETWADKSSLHAATQSAISTEYTPST 300

Query: 301 KRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSY 360
           +RESL+L+RE  L+S    SGIS+YGQD  L TIRSS +GR+ GPIVTQ+TQTMQIP+SY
Sbjct: 301 RRESLFLEREPQLESRYRLSGISIYGQDPALSTIRSSALGRASGPIVTQITQTMQIPISY 360

Query: 361 AEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAP 420
           AEDIIGVGGT+I  IRR SGAI+T+QESRGLPDEITVEIKGTSSQVQ+AQQLIQE ++  
Sbjct: 361 AEDIIGVGGTSIENIRRTSGAIITVQESRGLPDEITVEIKGTSSQVQLAQQLIQEYMNNH 420

Query: 421 KEPVTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           KE +T SSYG+++ +G R SY QL    SSY SSSLS+Q YGGYGSSG+GGY+++RL
Sbjct: 421 KESIT-SSYGQID-TGYRPSYPQL--GNSSYPSSSLSTQPYGGYGSSGVGGYTSYRL 466

[Close]

BLAST of CmaCh05G007150 vs. TAIR10
Match: AT4G26000.1 (AT4G26000.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 434.1 bits (1115), Expect = 1.1e-121
Identity = 250/456 (54.82%), Postives = 324/456 (71.05%), Query Frame = 1


Query: 54  LSAPASDSADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEE 113
           L+ P S +A     P+  D+++++WPGWPGDCVFR+IVPV KVG+IIGRKGD IKKMCEE
Sbjct: 43  LNQPDSLAAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEE 102

Query: 114 TRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDE----AK 173
           TRARI+VLDG V TPDR+VLISGKE+PEA +SPAMDAV+RVF+RV    +N+D+    A 
Sbjct: 103 TRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAG 162

Query: 174 TSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQG 233
           + F S+RLLVASTQAINLIGKQGSLIKSI E++GAS+R+LS +E PFYA  DER+V+LQG
Sbjct: 163 SVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQG 222

Query: 234 ESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWAD-KSSLLTASQSV 293
           E+LK+LKALEA+VGHLR+FLVD +V+PLFEK +    SQ RQ +  A+ KSSL T S ++
Sbjct: 223 EALKILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNL 282

Query: 294 ISAEYPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVT 353
           +  ++    +RE L+L+R++ +DS +  SG+S+Y QD VL    S G+ R     VTQV+
Sbjct: 283 MEPDFSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVS 342

Query: 354 QTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQ 413
           QTMQIP SYAEDIIGV G NIA+IRR SGA +TI+ES   PD+ITVEIKGT+SQVQ A+Q
Sbjct: 343 QTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQ 402

Query: 414 LIQEAVSAPKEPVT-SSSYGRLEASGM---------------------------RSSYSQ 473
           LIQE +   KEPV+ S  Y R+++  +                            ++YSQ
Sbjct: 403 LIQEFIINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYRPTAYSQ 462

Query: 474 LDASGSSYTSSSLSSQLYGG--YGSSGLGGYSTFRL 475
           L   G S  + +L+ Q YG     +S +GGYS++ L
Sbjct: 463 L--GGPSTYTPTLTGQTYGSEYRPASDVGGYSSYNL 495

[Close]

BLAST of CmaCh05G007150 vs. TAIR10
Match: AT3G04610.1 (AT3G04610.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 276.6 bits (706), Expect = 2.9e-74
Identity = 184/463 (39.74%), Postives = 257/463 (55.51%), Query Frame = 1


Query: 42  AESDLDPSNQDYLSAPASDSA---DHDESPNHTD--------ASDKKWPGWPGDCVFRLI 101
           A+ D+   N D +     D     +H ES   ++          +K+WPGWPG+ VFR++
Sbjct: 133 AQGDVQDHNGDEVQDKVEDEEGIPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRML 192

Query: 102 VPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDA 161
           VP  KVGSIIGRKGD+IKK+ EETRARI++LDG  GT +R V++SGKE+PE+ L P+MD 
Sbjct: 193 VPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDG 252

Query: 162 VIRVFKRVF--LFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRV 221
           ++RV  R+   L  E       S  S RLLV ++QA +LIGKQG  +K+IQE++   +RV
Sbjct: 253 LLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRV 312

Query: 222 LSGDEMPFYAGADERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQ 281
           L  +++P +A  D+R+VE+ GE   V +ALE +  HLRKFLVDRS++P FE     P  Q
Sbjct: 313 LGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPFFENQMQKPTRQ 372

Query: 282 DRQM----DAWADKSSLLTASQSVISAEYPSSTKRESLYLDREAYLDSYI---------- 341
              M     +W         + SV    Y  +      Y+      DSY           
Sbjct: 373 MDHMPPPHQSWGPPQG---HAPSVGGGGYGHNPPP---YMQPPPRHDSYYPPPEMRQPPM 432

Query: 342 ---PSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAF 401
              P  GIS YG++  +    +  V  +   +  QVTQ MQIPLSYA+ +IG  G+NI++
Sbjct: 433 EKQPHQGISAYGREPPM----NVHVSSAPPMVAQQVTQQMQIPLSYADAVIGTSGSNISY 492

Query: 402 IRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVS-----APKEPVTSSSY 461
            RR SGA +TIQE+RG+P E+TVE+ GT SQVQ A QLIQ  ++     AP +P T    
Sbjct: 493 TRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAEAGAPAPAQPQT---- 552

Query: 462 GRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGY 470
                +  +  Y+     GS Y ++  +    GGY +    GY
Sbjct: 553 ----VAPEQQGYNPYATHGSVYAAAPTNPP--GGYATDYSSGY 575

[Close]

BLAST of CmaCh05G007150 vs. TAIR10
Match: AT1G51580.1 (AT1G51580.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 112.5 bits (280), Expect = 7.3e-25
Identity = 103/376 (27.39%), Postives = 164/376 (43.62%), Query Frame = 1


Query: 52  DYLSAPASDSADHDE-SPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKM 111
           +Y S       DH   +P   D      P    +  FRL+ P  KVGS+IG+ G +++ +
Sbjct: 242 EYHSMEYHPQWDHPPPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRAL 301

Query: 112 CEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKT 171
             E+ A I+V D    + +R+++IS +E+ E   S A D V+RV  R+         A  
Sbjct: 302 QNESGASIKVSDPTHDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVV 361

Query: 172 SFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGE 231
           +    RLLV S     L+GK G LI  ++ +TGASIRV + D+   Y    + +V++ G 
Sbjct: 362 A----RLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGN 421

Query: 232 SLKVLKALEAVVGHLRKFLVDRSV--------LPLFEKSFNTPPSQ--DRQMDAWADKSS 291
              V  AL  ++  LR+ +    +         P F   +  PP     RQ  A  D+  
Sbjct: 422 LKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPFMGPYPEPPPPFGPRQYPASPDRYH 481

Query: 292 LLTASQSVISAEYPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLP------TIRSS 351
                        P   +      DR     S+ P  GI  +    V P       +R+ 
Sbjct: 482 SPVGPFHERHCHGPGFDRPPGPGFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNE 541

Query: 352 GVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITV 411
            +G S  P++T     + IP +Y   + G   +N+ +I++ SGA + + + +    E  V
Sbjct: 542 PIG-SENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLV 601

[Close]

BLAST of CmaCh05G007150 vs. TAIR10
Match: AT5G15270.2 (AT5G15270.2 RNA-binding KH domain-containing protein)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-22
Identity = 61/174 (35.06%), Postives = 98/174 (56.32%), Query Frame = 1


Query: 84  DCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDP--- 143
           D VFR + PV K+GS+IGR GD++K++  +TR++IR+ +   G  +RV+ I    D    
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 144 ----EAPLSPAMDAVIRVFKRVF---LFSENEDEAKTSFCSIRLLVASTQAINLIGKQGS 203
               E  LSPA DA+ R+  RV      SE+  E +    + +LLV S Q   ++G+ G 
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQ-VTAKLLVPSDQIGCILGRGGQ 168

Query: 204 LIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEAVVGHLRK 248
           ++++I+  TGA IR++    MP  A   + ++++ GE L V KAL  +   L +
Sbjct: 169 IVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221

[Close]

BLAST of CmaCh05G007150 vs. TAIR10
Match: AT5G46190.1 (AT5G46190.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-22
Identity = 100/332 (30.12%), Postives = 158/332 (47.59%), Query Frame = 1


Query: 88  RLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDR-VVLISGKEDPEAPLSP 147
           ++I    K+G +IG+ G  IK + + + + I V D      D  V+ ++  E P+   S 
Sbjct: 320 KVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSM 379

Query: 148 AMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASI 207
           A++AV+ + +++    E+ED+ K     ++LLV+S     +IGK GS+I  I++ T A I
Sbjct: 380 AVEAVLLLQEKIN--DEDEDKVK-----MQLLVSSKVIGCIIGKSGSIISEIRKRTKADI 439

Query: 208 RVLSGDEMPFYAGADERMVELQGESLKVLKALEAVVGHLR-KFLVDRSVLPLFEKSFNTP 267
            +  G+  P  A  ++ +VE+ GE   V  AL  +V  LR   L DR        S N P
Sbjct: 440 HISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRET-----GSRNQP 499

Query: 268 PSQDRQMDAWADKSSL--LTASQSVISAEYPSSTKRESLYLDREAYLDSYIPSS-GISLY 327
           P++    + ++  SS   L   QS +S+  P     +           S +PSS GI  Y
Sbjct: 500 PARSENNNFFSSSSSNTGLALPQSFMSS-VPQVASVDFNRRPETGSSMSMLPSSGGIYGY 559

Query: 328 GQDRVLPTIRSSGVGRSG---GPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAI 387
           G   V  T   S    S    G +    T  ++IP +    ++G GG N+  IRR SGA+
Sbjct: 560 GSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAM 619

Query: 388 LTIQESRGLPDEITVEIKGTSSQVQMAQQLIQ 412
           + I +S+         I GTS Q + A+ L Q
Sbjct: 620 IEISDSKNSHGGRVALISGTSEQKRTAENLFQ 638

[Close]

BLAST of CmaCh05G007150 vs. NCBI nr
Match: gi|778667604|ref|XP_004149510.2| (PREDICTED: RNA-binding KH domain-containing protein PEPPER [Cucumis sativus])

HSP 1 Score: 771.5 bits (1991), Expect = 8.3e-220
Identity = 418/474 (88.19%), Postives = 436/474 (91.98%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNT T+NGSTDA     NP SS L S+AAAEPDS EAG  +SD DPSNQDY S P SD
Sbjct: 1   MATNTTTENGSTDAIP---NPLSSTLPSLAAAEPDSTEAGDDDSDSDPSNQDYSSVPPSD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SA H+ S NHT  SDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SAAHEPS-NHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKE+ E+PLSPAMDAVIRVFKRV   SENEDEAK SFCSIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAGADERMVELQGESLKVLKALE 
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEG 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVD SVLPLFEKSFNTP SQDRQ + WADKSSLLTASQS+ISAEY  STKRE
Sbjct: 241 VVGHLRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYAPSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SL+LDREA+ DS+I SSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED
Sbjct: 301 SLFLDREAHFDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEP 420
           IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAV+APKEP
Sbjct: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEP 420

Query: 421 VTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRL+ +G+RSSYSQL ASGSS+TSSSLSSQ YGGYGSSGLGGY+TFRL
Sbjct: 421 VTSSSYGRLDTTGLRSSYSQLAASGSSFTSSSLSSQSYGGYGSSGLGGYTTFRL 470

[Close]

BLAST of CmaCh05G007150 vs. NCBI nr
Match: gi|659069666|ref|XP_008451191.1| (PREDICTED: poly(rC)-binding protein 3 [Cucumis melo])

HSP 1 Score: 760.0 bits (1961), Expect = 2.5e-216
Identity = 414/474 (87.34%), Postives = 434/474 (91.56%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNT TDNGSTDA A   NP+SS L S+AAAE DS E G  +SD+DPSNQDY S P SD
Sbjct: 1   MATNTTTDNGSTDAIA---NPQSSTLPSLAAAEADSTEVGDDDSDIDPSNQDYSSLPPSD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SA H+ S +HT ASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SAAHEPS-SHTGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKE+ ++PLSPAMDAVIRVFKRV   SENEDEAK SF SIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEELDSPLSPAMDAVIRVFKRVSGLSENEDEAKASFSSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAGADERMVELQGESLKVLKALE 
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEG 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVD SVLPLFEKSFNTP SQDRQ + WADKSSLLTASQS+ISAEYP STKRE
Sbjct: 241 VVGHLRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYPPSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SL+LDRE +LDS+I SSGISLYGQDRVLPTIRSSGVGRSGG    QVTQTMQIPLSYAED
Sbjct: 301 SLFLDRETHLDSHISSSGISLYGQDRVLPTIRSSGVGRSGGS--CQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEP 420
           IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAV+APKEP
Sbjct: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEP 420

Query: 421 VTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRL+ +G+RSSYSQL ASGSSYTSSSLSSQ YGGYGSSGLGGY+TFRL
Sbjct: 421 VTSSSYGRLDTTGLRSSYSQLAASGSSYTSSSLSSQSYGGYGSSGLGGYTTFRL 468

[Close]

BLAST of CmaCh05G007150 vs. NCBI nr
Match: gi|703156789|ref|XP_010111553.1| (Poly(rC)-binding protein 3 [Morus notabilis])

HSP 1 Score: 570.1 bits (1468), Expect = 3.7e-159
Identity = 324/480 (67.50%), Postives = 375/480 (78.12%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNP---ESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAP 60
           MATN  T NG T A   +  P   +++  AS A  +    E G A  +    N +   AP
Sbjct: 1   MATNEPTANGVTKAPKSDSQPIPSDATAAASTANEKAPVTEPGHATGN---RNMESEPAP 60

Query: 61  ASDSADHDESPNHTDAS---DKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEET 120
             +S +   S   T A+   DKKW GWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEET
Sbjct: 61  PGESGEAPASNAGTTATTDADKKWLGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEET 120

Query: 121 RARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCS 180
           RARIRVLDGAVGTPDR+VLISGKE+PEA LSPAMDAVIRVFKRV   SENE  A  +FCS
Sbjct: 121 RARIRVLDGAVGTPDRIVLISGKEEPEAALSPAMDAVIRVFKRVSGLSENE-AAGVAFCS 180

Query: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKV 240
           IRLLVASTQAINLIGKQGSLIKSIQESTGAS+RVL+GDE+PFYA ADER+VELQGE LKV
Sbjct: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLTGDEVPFYAAADERIVELQGEGLKV 240

Query: 241 LKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYP 300
           LKALEAV+GHLRKFLVD SV+PLFEKS+N+  SQ+RQ+D WADKS L  ++Q+ +   YP
Sbjct: 241 LKALEAVIGHLRKFLVDHSVIPLFEKSYNSTISQERQVDTWADKSMLQASTQTGVGTNYP 300

Query: 301 SSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIP 360
            + KRE  +L+RE  L+  +PSSGIS+YGQD  LP IR +G GR+G PIVTQ+ QTMQIP
Sbjct: 301 ITAKREPYFLERETQLEPQLPSSGISMYGQDTSLPGIRPTGFGRAGAPIVTQIAQTMQIP 360

Query: 361 LSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAV 420
           LSYAEDIIG+ G+NIA+IRR SGAILT+QESRGLPDEITVEIKGTSSQVQ+AQQLIQE +
Sbjct: 361 LSYAEDIIGIEGSNIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQLAQQLIQEVI 420

Query: 421 SAPKEPVTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           +  KEPV SS YGR++ + +RS+YSQL +S    TS    S   GGYGSSGLGGYSTFRL
Sbjct: 421 NNHKEPVPSS-YGRIDTA-LRSNYSQLSSSYPPTTSLPPRSYSGGGYGSSGLGGYSTFRL 474

[Close]

BLAST of CmaCh05G007150 vs. NCBI nr
Match: gi|225445949|ref|XP_002264417.1| (PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera])

HSP 1 Score: 563.9 bits (1452), Expect = 2.6e-157
Identity = 325/481 (67.57%), Postives = 375/481 (77.96%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MAT   T+    +  A +  P S P   ++     +  A  AES+  PS         S+
Sbjct: 1   MATTGTTEPAPVNGAAQS--PGSDPKTELSETPLSASNAATAESEQAPSEN-----LESE 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           S    E+     AS+KKWPGWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEETRARIRV
Sbjct: 61  STAPPETEAPAPASEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKT------SFCS 180
           LDGAVGT DR+VLISG+E+PEAPLSPAMDAVIRVFKRV   SE+E + K       +FCS
Sbjct: 121 LDGAVGTSDRIVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCS 180

Query: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKV 240
           IRLLVASTQAINLIGKQGSLIKSIQESTGAS+RVLSGDE+PFYA ADER+VELQGE+LKV
Sbjct: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEALKV 240

Query: 241 LKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYP 300
            KALEAVVGHLRKFLVD SVLPLFE+++N   SQDRQ D WADKS L   SQ+ + ++Y 
Sbjct: 241 QKALEAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYS 300

Query: 301 SSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIP 360
              KRESLYLDRE  ++     SG+ +YGQ+  L  IRSSG+GR+G PIVTQ+ QTMQIP
Sbjct: 301 LPAKRESLYLDRETQMEH----SGLPMYGQEHGLSGIRSSGLGRAGAPIVTQIAQTMQIP 360

Query: 361 LSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAV 420
           LSYAEDIIG+GG NIA+IRR SGAILT+QESRGLPDEITVEIKGTSSQVQ AQQLIQE +
Sbjct: 361 LSYAEDIIGIGGANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQTAQQLIQEFI 420

Query: 421 SAPKEPVTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLSSQLY-GGYGSSGLGGYSTFR 475
           S  KEPV  SSYG+++ SG+RSSYSQL    +SY+SSSLSSQ Y GGYGSSG+GGYS++R
Sbjct: 421 SNHKEPV-PSSYGKMD-SGLRSSYSQL--GNTSYSSSSLSSQPYGGGYGSSGVGGYSSYR 466

[Close]

BLAST of CmaCh05G007150 vs. NCBI nr
Match: gi|470120836|ref|XP_004296493.1| (PREDICTED: poly(rC)-binding protein 3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 561.6 bits (1446), Expect = 1.3e-156
Identity = 321/493 (65.11%), Postives = 378/493 (76.67%), Query Frame = 1


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MAT   ++NGS      +  PES+       ++P S E          +NQD  SAP SD
Sbjct: 1   MATTQPSENGSAKVTEPDPQPESAAATPAPDSDPLSTEI--------QNNQDSESAPKSD 60

Query: 61  SADH--DESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARI 120
           S       S +   A+DK+WPGWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEETRARI
Sbjct: 61  SEAPATTSSSDAVSAADKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARI 120

Query: 121 RVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTS------F 180
           RVLDGA GT DR+VLISG+E+PEAPLSPAMDAVIRVFKRV   SEN  +A+ S      F
Sbjct: 121 RVLDGAAGTTDRIVLISGREEPEAPLSPAMDAVIRVFKRVSGLSENAGDAELSGAAGVAF 180

Query: 181 CSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESL 240
           CSIR+LVASTQAINLIGKQGSLIKSIQEST AS+RVLSG+E+PFYA ADER++E+QGE+L
Sbjct: 181 CSIRMLVASTQAINLIGKQGSLIKSIQESTAASVRVLSGEEVPFYAAADERIIEMQGETL 240

Query: 241 KVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAE 300
           KVL+ALEAVV HLRKFLVD SVLPLFEK++  P SQ+RQ D WADKS L TA+Q+V    
Sbjct: 241 KVLRALEAVVSHLRKFLVDHSVLPLFEKTYTAPISQERQPDPWADKSLLHTATQTVGGTS 300

Query: 301 YPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQ 360
           YP +  RESL+L RE  L+S +PSSG+S+YGQ+  L ++RSSG+GR G PIVTQ+TQTMQ
Sbjct: 301 YPLTATRESLFLGRETQLESQLPSSGLSIYGQEAALSSLRSSGLGRPGAPIVTQITQTMQ 360

Query: 361 IPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQE 420
           IPLSYAEDIIGV G +I FIRR+SGA+LT+QESRGLPDEITVEIKGTSSQVQ AQQLIQE
Sbjct: 361 IPLSYAEDIIGVEGRSIEFIRRSSGALLTVQESRGLPDEITVEIKGTSSQVQAAQQLIQE 420

Query: 421 AVSAPKEPVTSSSYGRLEASGMRSSYSQLDASGSSYTSSSLS---SQLYGG-------YG 475
            ++   +    SSYGR++ +G+RSSYSQLD+  +SY SSS+S     +YG        YG
Sbjct: 421 VIATSNKDQIPSSYGRMD-TGLRSSYSQLDS--TSYPSSSVSLLPYDVYGNSLPSQQPYG 480

The following BLAST results are available for this feature:

BLAST of CmaCh05G007150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PEP_ARATH	2.0e-120	54.82	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP P...	[more]
FLK_ARATH	5.2e-73	39.74	Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1	[more]
PCBP3_MOUSE	1.3e-18	27.98	Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=1 SV=3	[more]
PCBP3_HUMAN	1.3e-18	27.98	Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2	[more]
HEN4_ARATH	2.4e-17	32.78	KH domain-containing protein HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=1 SV=1	[more]

BLAST of CmaCh05G007150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMH4_CUCSA	5.8e-220	88.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G061550 PE=4 SV=1	[more]
W9SIR6_9ROSA	2.5e-159	67.50	Poly(RC)-binding protein 3 OS=Morus notabilis GN=L484_005636 PE=4 SV=1	[more]
F6GXK2_VITVI	1.8e-157	67.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00030 PE=4 SV=...	[more]
M5XYS8_PRUPE	1.4e-152	63.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004405mg PE=4 SV=1	[more]
V4U0W5_9ROSI	5.1e-152	64.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008200mg PE=4 SV=1	[more]

BLAST of CmaCh05G007150 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26000.1	1.1e-121	54.82	RNA-binding KH domain-containing protein	[more]
AT3G04610.1	2.9e-74	39.74	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	7.3e-25	27.39	RNA-binding KH domain-containing protein	[more]
AT5G15270.2	2.6e-22	35.06	RNA-binding KH domain-containing protein	[more]
AT5G46190.1	4.5e-22	30.12	RNA-binding KH domain-containing protein	[more]

BLAST of CmaCh05G007150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778667604\|ref\|XP_004149510.2\|	8.3e-220	88.19	PREDICTED: RNA-binding KH domain-containing protein PEPPER [Cucumis sativus]	[more]
gi\|659069666\|ref\|XP_008451191.1\|	2.5e-216	87.34	PREDICTED: poly(rC)-binding protein 3 [Cucumis melo]	[more]
gi\|703156789\|ref\|XP_010111553.1\|	3.7e-159	67.50	Poly(rC)-binding protein 3 [Morus notabilis]	[more]
gi\|225445949\|ref\|XP_002264417.1\|	2.6e-157	67.57	PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]	[more]
gi\|470120836\|ref\|XP_004296493.1\|	1.3e-156	65.11	PREDICTED: poly(rC)-binding protein 3 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010467	gene expression
biological_process	GO:0048581	negative regulation of post-embryonic development
biological_process	GO:0006396	RNA processing
biological_process	GO:0048577	negative regulation of short-day photoperiodism, flowering
biological_process	GO:0048579	negative regulation of long-day photoperiodism, flowering
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0048467	gynoecium development
biological_process	GO:0008150	biological_process
biological_process	GO:0048367	shoot system development
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:2000028	regulation of photoperiodism, flowering
biological_process	GO:0048585	negative regulation of response to stimulus
biological_process	GO:2000242	negative regulation of reproductive process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G007150.1	CmaCh05G007150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 345..415 score: 6.9E-11coord: 83..156 score: 1.5E-9coord: 171..246 score: 2.8
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 74..139 score: 1.4E-16coord: 345..415 score: 3.4E-14coord: 172..247 score: 2.7
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 175..241 score: 2.3E-10coord: 348..412 score: 8.1E-12coord: 87..139 score: 6.6
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 346..410 score: 14.361coord: 172..241 score: 13.963coord: 84..151 score: 13
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 77..139 score: 6.28E-13coord: 168..254 score: 7.45E-13coord: 342..415 score: 2.63
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 69..471 score: 6.4E-215coord: 32..51 score: 6.4E
None	No IPR available	PANTHER	PTHR10288:SF132	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40-RELATED	coord: 32..51 score: 6.4E-215coord: 69..471 score: 6.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G007150	Cucsa.089000	Cucumber (Gy14) v1	cgycmaB0185
CmaCh05G007150	Cla022779	Watermelon (97103) v1	cmawmB769
CmaCh05G007150	Csa2G061550	Cucumber (Chinese Long) v2	cmacuB786
CmaCh05G007150	MELO3C003974	Melon (DHL92) v3.5.1	cmameB737
CmaCh05G007150	ClCG11G011750	Watermelon (Charleston Gray)	cmawcgB690
CmaCh05G007150	CSPI02G06420	Wild cucumber (PI 183967)	cmacpiB795
CmaCh05G007150	CmoCh05G007520	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G007150	CmoCh12G009180	Cucurbita moschata (Rifu)	cmacmoB764
CmaCh05G007150	Lsi11G007930	Bottle gourd (USVL1VR-Ls)	cmalsiB709
CmaCh05G007150	Cp4.1LG11g06100	Cucurbita pepo (Zucchini)	cmacpeB770
CmaCh05G007150	Cp4.1LG07g07550	Cucurbita pepo (Zucchini)	cmacpeB790
CmaCh05G007150	MELO3C003974.2	Melon (DHL92) v3.6.1	cmamedB831
CmaCh05G007150	CsaV3_2G008740	Cucumber (Chinese Long) v3	cmacucB0928
CmaCh05G007150	Cla97C11G217730	Watermelon (97103) v2	cmawmbB808
CmaCh05G007150	Bhi06G001068	Wax gourd	cmawgoB0925
CmaCh05G007150	CsGy2G006570	Cucumber (Gy14) v2	cgybcmaB252
CmaCh05G007150	Carg24193	Silver-seed gourd	carcmaB1379
CmaCh05G007150	Carg23938	Silver-seed gourd	carcmaB0872

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh05G007150	CmaCh12G009130	Cucurbita maxima (Rimu)	cmacmaB191

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G007150	Cucumber (Gy14) v2	cgybcmaB135
CmaCh05G007150	Melon (DHL92) v3.6.1	cmamedB812
CmaCh05G007150	Silver-seed gourd	carcmaB0837
CmaCh05G007150	Silver-seed gourd	carcmaB1096
CmaCh05G007150	Cucumber (Chinese Long) v3	cmacucB0921
CmaCh05G007150	Watermelon (97103) v2	cmawmbB823
CmaCh05G007150	Wax gourd	cmawgoB0973
CmaCh05G007150	Cucurbita maxima (Rimu)	cmacmaB117
CmaCh05G007150	Cucurbita maxima (Rimu)	cmacmaB168
CmaCh05G007150	Cucurbita moschata (Rifu)	cmacmoB758
CmaCh05G007150	Cucurbita moschata (Rifu)	cmacmoB760
CmaCh05G007150	Wild cucumber (PI 183967)	cmacpiB789
CmaCh05G007150	Cucumber (Chinese Long) v2	cmacuB779
CmaCh05G007150	Melon (DHL92) v3.5.1	cmameB720
CmaCh05G007150	Watermelon (Charleston Gray)	cmawcgB705
CmaCh05G007150	Watermelon (97103) v1	cmawmB772
CmaCh05G007150	Cucurbita pepo (Zucchini)	cmacpeB762
CmaCh05G007150	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G007150	Cucurbita pepo (Zucchini)	cmacpeB774
CmaCh05G007150	Cucurbita pepo (Zucchini)	cmacpeB782
CmaCh05G007150	Bottle gourd (USVL1VR-Ls)	cmalsiB733